RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 SH3BP5O60239 455 aa8.58□□□□□ -1.04
NEDD9-204ENST00000448183 XRCC5P13010 732 aaKnown RBP8.58□□□□□ -1.04
NEDD9-204ENST00000448183 PTH1RQ03431 593 aa8.58□□□□□ -1.04
NEDD9-204ENST00000448183 ARHGAP44Q17R89 818 aa8.58□□□□□ -1.04
NEDD9-204ENST00000448183 MYOCDQ8IZQ8 938 aa8.58□□□□□ -1.04
NEDD9-204ENST00000448183 PDE11AQ9HCR9 933 aa8.58□□□□□ -1.04
NEDD9-204ENST00000448183 EPN1Q9Y6I3 576 aaPredicted RBP8.58□□□□□ -1.04
NEDD9-204ENST00000448183 SAMD9Q5K651 1589 aa8.58□□□□□ -1.04
NEDD9-204ENST00000448183 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP8.58□□□□□ -1.04
NEDD9-204ENST00000448183 SLC1A4P43007 532 aa8.58□□□□□ -1.04
NEDD9-204ENST00000448183 SRGAP1Q7Z6B7 1085 aa8.58□□□□□ -1.04
NEDD9-204ENST00000448183 CCDC89Q8N998 374 aa8.58□□□□□ -1.04
NEDD9-204ENST00000448183 SPATA5Q8NB90 893 aa8.58□□□□□ -1.04
NEDD9-204ENST00000448183 CABLES1Q8TDN4 633 aa8.58□□□□□ -1.04
NEDD9-204ENST00000448183 MYCBPQ99417 103 aaPredicted RBP8.58□□□□□ -1.04
NEDD9-204ENST00000448183 ARHGEF10LQ9HCE6 1279 aa8.58□□□□□ -1.04
NEDD9-204ENST00000448183 A0A1W2PQ27 194 aa8.57□□□□□ -1.04
NEDD9-204ENST00000448183 A0A1W2PQ64 194 aa8.57□□□□□ -1.04
NEDD9-204ENST00000448183 A0A1W2PQD8 194 aa8.57□□□□□ -1.04
NEDD9-204ENST00000448183 CD19P15391 556 aa8.57□□□□□ -1.04
NEDD9-204ENST00000448183 ZNF827Q17R98 1081 aa8.57□□□□□ -1.04
NEDD9-204ENST00000448183 PAXIP1Q6ZW49 1069 aaPredicted RBP8.57□□□□□ -1.04
NEDD9-204ENST00000448183 AATFQ9NY61 560 aaKnown RBP eCLIP8.57□□□□□ -1.04
NEDD9-204ENST00000448183 ADGRL2O95490 1459 aa8.57□□□□□ -1.04
NEDD9-204ENST00000448183 A0A0D9SFI3 127 aa8.57□□□□□ -1.04
NEDD9-204ENST00000448183 CDC25BP30305 580 aa8.57□□□□□ -1.04
NEDD9-204ENST00000448183 EDC3Q96F86 508 aaKnown RBP8.57□□□□□ -1.04
NEDD9-204ENST00000448183 RIC8AQ9NPQ8 531 aa8.57□□□□□ -1.04
NEDD9-204ENST00000448183 PCDHB13Q9Y5F0 798 aa8.57□□□□□ -1.04
NEDD9-204ENST00000448183 EDC4Q6P2E9 1401 aaKnown RBP8.57□□□□□ -1.04
NEDD9-204ENST00000448183 DNMT1P26358 1616 aaKnown RBP8.57□□□□□ -1.04
NEDD9-204ENST00000448183 KDM3AQ9Y4C1 1321 aa8.57□□□□□ -1.04
NEDD9-204ENST00000448183 GTPBP6O43824 516 aaPredicted RBP8.57□□□□□ -1.04
NEDD9-204ENST00000448183 CASC4Q6P4E1 433 aa8.57□□□□□ -1.04
NEDD9-204ENST00000448183 CTAGE3PQ8IX95 158 aa8.57□□□□□ -1.04
NEDD9-204ENST00000448183 SYCP2Q9BX26 1530 aa8.57□□□□□ -1.04
NEDD9-204ENST00000448183 H2AFZP0C0S5 128 aa8.57□□□□□ -1.04
NEDD9-204ENST00000448183 ABCB4P21439 1286 aa8.57□□□□□ -1.04
NEDD9-204ENST00000448183 CCT5P48643 541 aa8.57□□□□□ -1.04
NEDD9-204ENST00000448183 TFAP4Q01664 338 aa8.57□□□□□ -1.04
NEDD9-204ENST00000448183 SH2D4BQ5SQS7 431 aa8.57□□□□□ -1.04
NEDD9-204ENST00000448183 H2AFVQ71UI9 128 aa8.57□□□□□ -1.04
NEDD9-204ENST00000448183 MAEAQ7L5Y9 396 aa8.57□□□□□ -1.04
NEDD9-204ENST00000448183 RNF34Q969K3 372 aa8.57□□□□□ -1.04
NEDD9-204ENST00000448183 USP44Q9H0E7 712 aa8.57□□□□□ -1.04
NEDD9-204ENST00000448183 VCX3AQ9NNX9 186 aa8.57□□□□□ -1.04
NEDD9-204ENST00000448183 ARMCX3Q9UH62 379 aaPredicted RBP8.57□□□□□ -1.04
NEDD9-204ENST00000448183 IFNB1P01574 187 aa8.56□□□□□ -1.04
NEDD9-204ENST00000448183 NDUFA8P51970 172 aa8.56□□□□□ -1.04
NEDD9-204ENST00000448183 DMTNQ08495 405 aa8.56□□□□□ -1.04
NEDD9-204ENST00000448183 GRK7Q8WTQ7 553 aa8.56□□□□□ -1.04
NEDD9-204ENST00000448183 PPP1R13BQ96KQ4 1090 aa8.56□□□□□ -1.04
NEDD9-204ENST00000448183 LGR6Q9HBX8 967 aa8.56□□□□□ -1.04
NEDD9-204ENST00000448183 NCKAP5LQ9HCH0 1330 aa8.56□□□□□ -1.04
NEDD9-204ENST00000448183 UFL1O94874 794 aa8.56□□□□□ -1.04
NEDD9-204ENST00000448183 SETSIPP0DME0 302 aa8.56□□□□□ -1.04
NEDD9-204ENST00000448183 ADD1P35611 737 aaKnown RBP8.56□□□□□ -1.04
NEDD9-204ENST00000448183 PPP2R5DQ14738 602 aa8.56□□□□□ -1.04
NEDD9-204ENST00000448183 CCDC117Q8IWD4 279 aaPredicted RBP8.56□□□□□ -1.04
NEDD9-204ENST00000448183 STAG1Q8WVM7 1258 aa8.56□□□□□ -1.04
NEDD9-204ENST00000448183 VTI1AQ96AJ9 217 aa8.56□□□□□ -1.04
NEDD9-204ENST00000448183 HAUS7Q99871 368 aa8.56□□□□□ -1.04
NEDD9-204ENST00000448183 DPH5Q9H2P9 285 aa8.56□□□□□ -1.04
NEDD9-204ENST00000448183 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.56□□□□□ -1.04
NEDD9-204ENST00000448183 TRAPPC8Q9Y2L5 1435 aa8.56□□□□□ -1.04
NEDD9-204ENST00000448183 NEO1Q92859 1461 aa8.56□□□□□ -1.04
NEDD9-204ENST00000448183 MAST3O60307 1309 aa8.56□□□□□ -1.04
NEDD9-204ENST00000448183 MROH5Q6ZUA9 1318 aa8.56□□□□□ -1.04
NEDD9-204ENST00000448183 BUB1O43683 1085 aa8.56□□□□□ -1.04
NEDD9-204ENST00000448183 CLTAP09496 248 aa8.56□□□□□ -1.04
NEDD9-204ENST00000448183 PHBP35232 272 aa8.56□□□□□ -1.04
NEDD9-204ENST00000448183 CCDC13Q8IYE1 715 aa8.56□□□□□ -1.04
NEDD9-204ENST00000448183 BLIDQ8IZY5 108 aa8.56□□□□□ -1.04
NEDD9-204ENST00000448183 FBXO18Q8NFZ0 1043 aa8.56□□□□□ -1.04
NEDD9-204ENST00000448183 EAF2Q96CJ1 260 aaPredicted RBP8.56□□□□□ -1.04
NEDD9-204ENST00000448183 IWS1Q96ST2 819 aa8.56□□□□□ -1.04
NEDD9-204ENST00000448183 ZMYM6O95789 1325 aa8.56□□□□□ -1.04
NEDD9-204ENST00000448183 CEP170Q5SW79 1584 aa8.56□□□□□ -1.04
NEDD9-204ENST00000448183 SMCO2A6NFE2 343 aa8.56□□□□□ -1.04
NEDD9-204ENST00000448183 TAF5LO75529 589 aa8.56□□□□□ -1.04
NEDD9-204ENST00000448183 PPARAQ07869 468 aa8.56□□□□□ -1.04
NEDD9-204ENST00000448183 PALM2Q8IXS6 379 aa8.56□□□□□ -1.04
NEDD9-204ENST00000448183 FANCBQ8NB91 859 aa8.56□□□□□ -1.04
NEDD9-204ENST00000448183 PCDHA5Q9Y5H7 936 aa8.56□□□□□ -1.04
NEDD9-204ENST00000448183 FAM135BQ49AJ0 1406 aa8.55□□□□□ -1.04
NEDD9-204ENST00000448183 ARHGAP42A6NI28 874 aa8.55□□□□□ -1.04
NEDD9-204ENST00000448183 ADCY8P40145 1251 aa8.55□□□□□ -1.04
NEDD9-204ENST00000448183 TAF12Q16514 161 aa8.55□□□□□ -1.04
NEDD9-204ENST00000448183 TRIM68Q6AZZ1 485 aa8.55□□□□□ -1.04
NEDD9-204ENST00000448183 CDAN1Q8IWY9 1227 aa8.55□□□□□ -1.04
NEDD9-204ENST00000448183 KRT12Q99456 494 aa8.55□□□□□ -1.04
NEDD9-204ENST00000448183 ATP8A2Q9NTI2 1148 aa8.55□□□□□ -1.04
NEDD9-204ENST00000448183 TYW1Q9NV66 732 aaKnown RBP8.55□□□□□ -1.04
NEDD9-204ENST00000448183 RTEL1Q9NZ71 1219 aa8.55□□□□□ -1.04
NEDD9-204ENST00000448183 NRBP1Q9UHY1 535 aa8.55□□□□□ -1.04
NEDD9-204ENST00000448183 KCNG1Q9UIX4 513 aa8.55□□□□□ -1.04
NEDD9-204ENST00000448183 BTBD18B2RXH4 712 aa8.55□□□□□ -1.04
NEDD9-204ENST00000448183 LUC7L3O95232 432 aaKnown RBP8.55□□□□□ -1.04
NEDD9-204ENST00000448183 A1BGP04217 495 aa8.55□□□□□ -1.04
NEDD9-204ENST00000448183 HSPD1P10809 573 aaKnown RBP8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms