RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 USO1O60763 962 aaKnown RBP13.34□□□□□ -0.27
MSH6-204ENST00000445503 SCG2P13521 617 aa13.34□□□□□ -0.27
MSH6-204ENST00000445503 ARID5AQ03989 594 aa13.34□□□□□ -0.27
MSH6-204ENST00000445503 SAMD1Q6SPF0 538 aaPredicted RBP13.34□□□□□ -0.27
MSH6-204ENST00000445503 PYM1Q9BRP8 204 aaKnown RBP13.34□□□□□ -0.27
MSH6-204ENST00000445503 TFR2Q9UP52 801 aa13.34□□□□□ -0.27
MSH6-204ENST00000445503 KRT18P05783 430 aaKnown RBP13.34□□□□□ -0.27
MSH6-204ENST00000445503 CYP2D6P10635 497 aa13.34□□□□□ -0.27
MSH6-204ENST00000445503 NOC4LQ9BVI4 516 aaKnown RBP13.34□□□□□ -0.27
MSH6-204ENST00000445503 CCDC87Q9NVE4 849 aa13.34□□□□□ -0.27
MSH6-204ENST00000445503 ARID4AP29374 1257 aaPredicted RBP13.33□□□□□ -0.27
MSH6-204ENST00000445503 KRT83P78385 493 aa13.33□□□□□ -0.27
MSH6-204ENST00000445503 ALX1Q15699 326 aa13.33□□□□□ -0.27
MSH6-204ENST00000445503 TRIM10Q9UDY6 481 aa13.33□□□□□ -0.27
MSH6-204ENST00000445503 SEC63Q9UGP8 760 aaKnown RBP13.33□□□□□ -0.27
MSH6-204ENST00000445503 PP2D1A8MPX8 630 aa13.33□□□□□ -0.28
MSH6-204ENST00000445503 TBC1D8O95759 1140 aa13.33□□□□□ -0.28
MSH6-204ENST00000445503 CYP19A1P11511 503 aaPredicted RBP13.33□□□□□ -0.28
MSH6-204ENST00000445503 EARS2Q5JPH6 523 aaKnown RBP13.33□□□□□ -0.28
MSH6-204ENST00000445503 FBXL16Q8N461 479 aa13.33□□□□□ -0.28
MSH6-204ENST00000445503 HDAC6Q9UBN7 1215 aa13.33□□□□□ -0.28
MSH6-204ENST00000445503 B4DLN1 442 aa13.33□□□□□ -0.28
MSH6-204ENST00000445503 GTPBP6O43824 516 aaPredicted RBP13.33□□□□□ -0.28
MSH6-204ENST00000445503 PARP1P09874 1014 aaKnown RBP13.33□□□□□ -0.28
MSH6-204ENST00000445503 CYP2C19P33261 490 aa13.33□□□□□ -0.28
MSH6-204ENST00000445503 CYP27A1Q02318 531 aa13.33□□□□□ -0.28
MSH6-204ENST00000445503 CHP1Q99653 195 aa13.33□□□□□ -0.28
MSH6-204ENST00000445503 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.33□□□□□ -0.28
MSH6-204ENST00000445503 HSD3B7Q9H2F3 369 aa13.33□□□□□ -0.28
MSH6-204ENST00000445503 A0A1B0GTH6 734 aa13.32□□□□□ -0.28
MSH6-204ENST00000445503 SASH3O75995 380 aa13.32□□□□□ -0.28
MSH6-204ENST00000445503 ANKRD13CQ8N6S4 541 aa13.32□□□□□ -0.28
MSH6-204ENST00000445503 ZNF579Q8NAF0 562 aaKnown RBP13.32□□□□□ -0.28
MSH6-204ENST00000445503 RNASE9P60153 205 aaKnown RBP13.32□□□□□ -0.28
MSH6-204ENST00000445503 IQCEQ6IPM2 695 aa13.32□□□□□ -0.28
MSH6-204ENST00000445503 PLA2G12BQ9BX93 195 aa13.32□□□□□ -0.28
MSH6-204ENST00000445503 FAM207AQ9NSI2 230 aaPredicted RBP13.32□□□□□ -0.28
MSH6-204ENST00000445503 SAR1BQ9Y6B6 198 aa13.32□□□□□ -0.28
MSH6-204ENST00000445503 SMIM5Q71RC9 77 aa13.32□□□□□ -0.28
MSH6-204ENST00000445503 DYMQ7RTS9 669 aa13.32□□□□□ -0.28
MSH6-204ENST00000445503 BLIDQ8IZY5 108 aa13.32□□□□□ -0.28
MSH6-204ENST00000445503 CCDC51Q96ER9 411 aa13.32□□□□□ -0.28
MSH6-204ENST00000445503 CALML4Q96GE6 196 aa13.32□□□□□ -0.28
MSH6-204ENST00000445503 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.32□□□□□ -0.28
MSH6-204ENST00000445503 G3V3G9 751 aa13.32□□□□□ -0.28
MSH6-204ENST00000445503 PAFAH1B1P43034 410 aa13.32□□□□□ -0.28
MSH6-204ENST00000445503 DDB1Q16531 1140 aa13.32□□□□□ -0.28
MSH6-204ENST00000445503 DCAF8Q5TAQ9 597 aa13.32□□□□□ -0.28
MSH6-204ENST00000445503 NBPF5PQ86XG9 351 aaPredicted RBP13.32□□□□□ -0.28
MSH6-204ENST00000445503 CPVLQ9H3G5 476 aa13.32□□□□□ -0.28
MSH6-204ENST00000445503 ADD3Q9UEY8 706 aaKnown RBP13.32□□□□□ -0.28
MSH6-204ENST00000445503 LRRC37A3O60309 1634 aa13.31□□□□□ -0.28
MSH6-204ENST00000445503 ABCC12Q96J65 1359 aa13.31□□□□□ -0.28
MSH6-204ENST00000445503 PRPF3O43395 683 aaKnown RBP13.31□□□□□ -0.28
MSH6-204ENST00000445503 CCNT1O60563 726 aaKnown RBP13.31□□□□□ -0.28
MSH6-204ENST00000445503 CKAP4Q07065 602 aaKnown RBP13.31□□□□□ -0.28
MSH6-204ENST00000445503 PPP2R5BQ15173 497 aa13.31□□□□□ -0.28
MSH6-204ENST00000445503 CDHR2Q9BYE9 1310 aa13.31□□□□□ -0.28
MSH6-204ENST00000445503 A0A087X0B3 334 aa13.31□□□□□ -0.28
MSH6-204ENST00000445503 ATP8B1O43520 1251 aa13.31□□□□□ -0.28
MSH6-204ENST00000445503 TXKP42681 527 aa13.31□□□□□ -0.28
MSH6-204ENST00000445503 CRKLP46109 303 aaKnown RBP13.31□□□□□ -0.28
MSH6-204ENST00000445503 WHAMMP3Q1A5X7 153 aa13.31□□□□□ -0.28
MSH6-204ENST00000445503 TYW1BQ6NUM6 668 aa13.31□□□□□ -0.28
MSH6-204ENST00000445503 ABHD10Q9NUJ1 306 aa13.31□□□□□ -0.28
MSH6-204ENST00000445503 RGPD2P0DJD1 1756 aa13.31□□□□□ -0.28
MSH6-204ENST00000445503 H0YHG0 523 aa13.31□□□□□ -0.28
MSH6-204ENST00000445503 ZPR1O75312 459 aa13.31□□□□□ -0.28
MSH6-204ENST00000445503 HIBADHP31937 336 aaKnown RBP13.31□□□□□ -0.28
MSH6-204ENST00000445503 IL6STP40189 918 aaPredicted RBP13.31□□□□□ -0.28
MSH6-204ENST00000445503 PRCPP42785 496 aa13.31□□□□□ -0.28
MSH6-204ENST00000445503 VSNL1P62760 191 aa13.31□□□□□ -0.28
MSH6-204ENST00000445503 TRIM14Q14142 442 aa13.31□□□□□ -0.28
MSH6-204ENST00000445503 CASP8Q14790 479 aa13.31□□□□□ -0.28
MSH6-204ENST00000445503 FAM170AA1A519 330 aa13.3□□□□□ -0.28
MSH6-204ENST00000445503 N4BP1O75113 896 aaKnown RBP13.3□□□□□ -0.28
MSH6-204ENST00000445503 GYPCP04921 128 aa13.3□□□□□ -0.28
MSH6-204ENST00000445503 PARP10Q53GL7 1025 aa13.3□□□□□ -0.28
MSH6-204ENST00000445503 TCP11X2Q5H9J9 407 aa13.3□□□□□ -0.28
MSH6-204ENST00000445503 RASSF4Q9H2L5 321 aa13.3□□□□□ -0.28
MSH6-204ENST00000445503 WTIPA6NIX2 430 aaPredicted RBP13.3□□□□□ -0.28
MSH6-204ENST00000445503 NDUFA10O95299 355 aa13.3□□□□□ -0.28
MSH6-204ENST00000445503 MCM3P25205 808 aa13.3□□□□□ -0.28
MSH6-204ENST00000445503 CCDC40Q4G0X9 1142 aa13.3□□□□□ -0.28
MSH6-204ENST00000445503 GSPT2Q8IYD1 628 aaKnown RBP13.3□□□□□ -0.28
MSH6-204ENST00000445503 PNMA1Q8ND90 353 aa13.3□□□□□ -0.28
MSH6-204ENST00000445503 EHBP1Q8NDI1 1231 aa13.3□□□□□ -0.28
MSH6-204ENST00000445503 NLRP3Q96P20 1036 aa13.3□□□□□ -0.28
MSH6-204ENST00000445503 TCRBV5S4A2TA0A5A2 114 aa13.3□□□□□ -0.28
MSH6-204ENST00000445503 TACC1O75410 805 aa13.3□□□□□ -0.28
MSH6-204ENST00000445503 ZNF18P17022 549 aa13.3□□□□□ -0.28
MSH6-204ENST00000445503 DYNLL2Q96FJ2 89 aa13.3□□□□□ -0.28
MSH6-204ENST00000445503 H7C1D1 291 aa13.29□□□□□ -0.28
MSH6-204ENST00000445503 USP17L8P0C7I0 530 aa13.29□□□□□ -0.28
MSH6-204ENST00000445503 FAM114A1Q8IWE2 563 aa13.29□□□□□ -0.28
MSH6-204ENST00000445503 SRBD1Q8N5C6 995 aaKnown RBP13.29□□□□□ -0.28
MSH6-204ENST00000445503 TNS3Q68CZ2 1445 aa13.29□□□□□ -0.28
MSH6-204ENST00000445503 TTC26A0AVF1 554 aa13.29□□□□□ -0.28
MSH6-204ENST00000445503 IVLP07476 585 aa13.29□□□□□ -0.28
MSH6-204ENST00000445503 TECP42680 631 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms