RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 MICU3Q86XE3 530 aa7.88□□□□□ -1.15
VPS53-204ENST00000437048 LINS1Q8NG48 757 aa7.88□□□□□ -1.15
VPS53-204ENST00000437048 GSDMAQ96QA5 445 aa7.88□□□□□ -1.15
VPS53-204ENST00000437048 TEX12Q9BXU0 123 aa7.88□□□□□ -1.15
VPS53-204ENST00000437048 ZSWIM4Q9H7M6 989 aa7.88□□□□□ -1.15
VPS53-204ENST00000437048 LRRC8AQ8IWT6 810 aa7.88□□□□□ -1.15
VPS53-204ENST00000437048 STK17AQ9UEE5 414 aa7.88□□□□□ -1.15
VPS53-204ENST00000437048 CCT6AP40227 531 aaKnown RBP7.88□□□□□ -1.15
VPS53-204ENST00000437048 KRT25Q7Z3Z0 450 aa7.88□□□□□ -1.15
VPS53-204ENST00000437048 OPTNQ96CV9 577 aa7.88□□□□□ -1.15
VPS53-204ENST00000437048 ANO9A1A5B4 782 aa7.88□□□□□ -1.15
VPS53-204ENST00000437048 WDR46O15213 610 aaKnown RBP7.88□□□□□ -1.15
VPS53-204ENST00000437048 DNM1Q05193 864 aaKnown RBP7.88□□□□□ -1.15
VPS53-204ENST00000437048 SLC20A2Q08357 652 aa7.88□□□□□ -1.15
VPS53-204ENST00000437048 NSMCE1Q8WV22 266 aa7.88□□□□□ -1.15
VPS53-204ENST00000437048 KIAA0232Q92628 1395 aa7.88□□□□□ -1.15
VPS53-204ENST00000437048 INTS9Q9NV88 658 aaKnown RBP7.88□□□□□ -1.15
VPS53-204ENST00000437048 BIN1O00499 593 aa7.88□□□□□ -1.15
VPS53-204ENST00000437048 RWDD2BP57060 319 aa7.88□□□□□ -1.15
VPS53-204ENST00000437048 TRIM55Q9BYV6 548 aa7.88□□□□□ -1.15
VPS53-204ENST00000437048 EXOC5O00471 708 aa7.88□□□□□ -1.15
VPS53-204ENST00000437048 BRD1O95696 1058 aa7.88□□□□□ -1.15
VPS53-204ENST00000437048 YY1P25490 414 aa7.88□□□□□ -1.15
VPS53-204ENST00000437048 KRT9P35527 623 aa7.88□□□□□ -1.15
VPS53-204ENST00000437048 ZNF274Q96GC6 653 aaPredicted RBP7.88□□□□□ -1.15
VPS53-204ENST00000437048 HSPA13P48723 471 aa7.87□□□□□ -1.15
VPS53-204ENST00000437048 GNGT1P63211 74 aa7.87□□□□□ -1.15
VPS53-204ENST00000437048 CRYMQ14894 314 aa7.87□□□□□ -1.15
VPS53-204ENST00000437048 TTC1Q99614 292 aa7.87□□□□□ -1.15
VPS53-204ENST00000437048 USP26Q9BXU7 913 aa7.87□□□□□ -1.15
VPS53-204ENST00000437048 PARVBQ9HBI1 364 aa7.87□□□□□ -1.15
VPS53-204ENST00000437048 BLOC1S6Q9UL45 172 aa7.87□□□□□ -1.15
VPS53-204ENST00000437048 BLVRAP53004 296 aa7.87□□□□□ -1.15
VPS53-204ENST00000437048 TSHZ3Q63HK5 1081 aa7.87□□□□□ -1.15
VPS53-204ENST00000437048 GRAMD4Q6IC98 578 aa7.87□□□□□ -1.15
VPS53-204ENST00000437048 MORC4Q8TE76 937 aa7.87□□□□□ -1.15
VPS53-204ENST00000437048 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.87□□□□□ -1.15
VPS53-204ENST00000437048 ANGEL1Q9UNK9 670 aaKnown RBP7.87□□□□□ -1.15
VPS53-204ENST00000437048 RBM8AQ9Y5S9 174 aaKnown RBP7.87□□□□□ -1.15
VPS53-204ENST00000437048 PEX19P40855 299 aa7.87□□□□□ -1.15
VPS53-204ENST00000437048 PANX2Q96RD6 677 aa7.87□□□□□ -1.15
VPS53-204ENST00000437048 PPP4R3CPQ6ZMV5 832 aa7.87□□□□□ -1.15
VPS53-204ENST00000437048 SLC26A6Q9BXS9 759 aa7.87□□□□□ -1.15
VPS53-204ENST00000437048 TRIM33Q9UPN9 1127 aa7.87□□□□□ -1.15
VPS53-204ENST00000437048 TSPY2A6NKD2 308 aa7.87□□□□□ -1.15
VPS53-204ENST00000437048 DEAF1O75398 565 aaPredicted RBP7.87□□□□□ -1.15
VPS53-204ENST00000437048 TEX2Q8IWB9 1127 aa7.87□□□□□ -1.15
VPS53-204ENST00000437048 N4BP2L2Q92802 583 aaPredicted RBP7.87□□□□□ -1.15
VPS53-204ENST00000437048 POP5Q969H6 163 aaKnown RBP7.87□□□□□ -1.15
VPS53-204ENST00000437048 CCDC138Q96M89 665 aa7.87□□□□□ -1.15
VPS53-204ENST00000437048 IL1RAPL1Q9NZN1 696 aa7.87□□□□□ -1.15
VPS53-204ENST00000437048 EEF2P13639 858 aaKnown RBP7.87□□□□□ -1.15
VPS53-204ENST00000437048 GUCY2CP25092 1073 aa7.87□□□□□ -1.15
VPS53-204ENST00000437048 SARM1Q6SZW1 724 aa7.87□□□□□ -1.15
VPS53-204ENST00000437048 CSGALNACT2Q8N6G5 542 aa7.87□□□□□ -1.15
VPS53-204ENST00000437048 TUBA8Q9NY65 449 aaPredicted RBP7.87□□□□□ -1.15
VPS53-204ENST00000437048 TRPM2O94759 1503 aa7.87□□□□□ -1.15
VPS53-204ENST00000437048 TMEM132EQ6IEE7 984 aa7.87□□□□□ -1.15
VPS53-204ENST00000437048 CDK19Q9BWU1 502 aa7.87□□□□□ -1.15
VPS53-204ENST00000437048 COL17A1Q9UMD9 1497 aaPredicted RBP7.87□□□□□ -1.15
VPS53-204ENST00000437048 RANBP1P43487 201 aa7.87□□□□□ -1.15
VPS53-204ENST00000437048 RPS6KA2Q15349 733 aa7.87□□□□□ -1.15
VPS53-204ENST00000437048 SPTLC3Q9NUV7 552 aa7.87□□□□□ -1.15
VPS53-204ENST00000437048 STX17P56962 302 aa7.86□□□□□ -1.15
VPS53-204ENST00000437048 TAF11Q15544 211 aa7.86□□□□□ -1.15
VPS53-204ENST00000437048 AGTPBP1Q9UPW5 1226 aa7.86□□□□□ -1.15
VPS53-204ENST00000437048 CARMIL3Q8ND23 1372 aa7.86□□□□□ -1.15
VPS53-204ENST00000437048 MAP3K5Q99683 1374 aa7.86□□□□□ -1.15
VPS53-204ENST00000437048 H7C0S8 307 aa7.86□□□□□ -1.15
VPS53-204ENST00000437048 EXOC8Q8IYI6 725 aa7.86□□□□□ -1.15
VPS53-204ENST00000437048 MTBPQ96DY7 904 aa7.86□□□□□ -1.15
VPS53-204ENST00000437048 BPIFA3Q9BQP9 254 aa7.86□□□□□ -1.15
VPS53-204ENST00000437048 DNAJC17Q9NVM6 304 aaKnown RBP7.86□□□□□ -1.15
VPS53-204ENST00000437048 IQCA1LA6NCM1 817 aa7.86□□□□□ -1.15
VPS53-204ENST00000437048 ATP2C2O75185 946 aa7.86□□□□□ -1.15
VPS53-204ENST00000437048 HSPA9P38646 679 aaKnown RBP7.86□□□□□ -1.15
VPS53-204ENST00000437048 SF3A3Q12874 501 aaKnown RBP eCLIP7.86□□□□□ -1.15
VPS53-204ENST00000437048 JARID2Q92833 1246 aaPredicted RBP7.86□□□□□ -1.15
VPS53-204ENST00000437048 LRGUKQ96M69 825 aa7.86□□□□□ -1.15
VPS53-204ENST00000437048 XAB2Q9HCS7 855 aaKnown RBP7.86□□□□□ -1.15
VPS53-204ENST00000437048 MAST3O60307 1309 aa7.86□□□□□ -1.15
VPS53-204ENST00000437048 RANBP6O60518 1105 aaKnown RBP7.86□□□□□ -1.15
VPS53-204ENST00000437048 STAT1P42224 750 aa7.86□□□□□ -1.15
VPS53-204ENST00000437048 ALCAMQ13740 583 aa7.86□□□□□ -1.15
VPS53-204ENST00000437048 TMEM87AQ8NBN3 555 aa7.86□□□□□ -1.15
VPS53-204ENST00000437048 OR9Q1Q8NGQ5 310 aa7.86□□□□□ -1.15
VPS53-204ENST00000437048 SERPINI2O75830 405 aa7.86□□□□□ -1.15
VPS53-204ENST00000437048 ZNF202O95125 648 aa7.86□□□□□ -1.15
VPS53-204ENST00000437048 TNFAIP3P21580 790 aa7.86□□□□□ -1.15
VPS53-204ENST00000437048 RAPGEF1Q13905 1077 aa7.86□□□□□ -1.15
VPS53-204ENST00000437048 KLHL29Q96CT2 875 aa7.86□□□□□ -1.15
VPS53-204ENST00000437048 USP40Q9NVE5 1235 aa7.86□□□□□ -1.15
VPS53-204ENST00000437048 IFNA8P32881 189 aa7.86□□□□□ -1.15
VPS53-204ENST00000437048 ATP2B2Q01814 1243 aa7.86□□□□□ -1.15
VPS53-204ENST00000437048 POSTNQ15063 836 aa7.86□□□□□ -1.15
VPS53-204ENST00000437048 FSCBQ5H9T9 825 aa7.86□□□□□ -1.15
VPS53-204ENST00000437048 GADD45GIP1Q8TAE8 222 aaPredicted RBP7.86□□□□□ -1.15
VPS53-204ENST00000437048 SYF2O95926 243 aaKnown RBP7.86□□□□□ -1.15
VPS53-204ENST00000437048 ACTN1P12814 892 aa7.86□□□□□ -1.15
VPS53-204ENST00000437048 RFX1P22670 979 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms