RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 KIAA1211Q6ZU35 1233 aa13.53□□□□□ -0.24
COL28A1-203ENST00000435823 TBC1D10CQ8IV04 446 aa13.53□□□□□ -0.24
COL28A1-203ENST00000435823 ESR2Q92731 530 aa13.53□□□□□ -0.24
COL28A1-203ENST00000435823 MKL1Q969V6 931 aa13.53□□□□□ -0.24
COL28A1-203ENST00000435823 COA7Q96BR5 231 aa13.53□□□□□ -0.24
COL28A1-203ENST00000435823 RBPJLQ9UBG7 517 aa13.53□□□□□ -0.24
COL28A1-203ENST00000435823 SRRDQ9UH36 339 aa13.53□□□□□ -0.24
COL28A1-203ENST00000435823 TACC3Q9Y6A5 838 aa13.53□□□□□ -0.24
COL28A1-203ENST00000435823 MYPNQ86TC9 1320 aa13.53□□□□□ -0.24
COL28A1-203ENST00000435823 NDUFB10O96000 172 aa13.52□□□□□ -0.25
COL28A1-203ENST00000435823 ERVK-9P63128 1117 aa13.52□□□□□ -0.25
COL28A1-203ENST00000435823 ERVK-24P63145 666 aa13.52□□□□□ -0.25
COL28A1-203ENST00000435823 FAM83BQ5T0W9 1011 aa13.52□□□□□ -0.25
COL28A1-203ENST00000435823 LRRC47Q8N1G4 583 aaKnown RBP13.52□□□□□ -0.25
COL28A1-203ENST00000435823 GMCL1P1Q8NEA9 526 aa13.52□□□□□ -0.25
COL28A1-203ENST00000435823 RAET1EQ8TD07 263 aa13.52□□□□□ -0.25
COL28A1-203ENST00000435823 NBPF3Q9H094 633 aa13.52□□□□□ -0.25
COL28A1-203ENST00000435823 CWC22Q9HCG8 908 aaKnown RBP13.52□□□□□ -0.25
COL28A1-203ENST00000435823 TXNRD2Q9NNW7 524 aa13.52□□□□□ -0.25
COL28A1-203ENST00000435823 PTCH2Q9Y6C5 1203 aa13.52□□□□□ -0.25
COL28A1-203ENST00000435823 NEDD4P46934 1319 aa13.51□□□□□ -0.25
COL28A1-203ENST00000435823 NMT2O60551 498 aa13.51□□□□□ -0.25
COL28A1-203ENST00000435823 MAPK4P31152 587 aa13.51□□□□□ -0.25
COL28A1-203ENST00000435823 PRKCZQ05513 592 aa13.51□□□□□ -0.25
COL28A1-203ENST00000435823 SLC9C1Q4G0N8 1177 aa13.51□□□□□ -0.25
COL28A1-203ENST00000435823 SLFN13Q68D06 897 aa13.51□□□□□ -0.25
COL28A1-203ENST00000435823 MB21D1Q8N884 522 aa13.51□□□□□ -0.25
COL28A1-203ENST00000435823 KRT23Q9C075 422 aa13.51□□□□□ -0.25
COL28A1-203ENST00000435823 CNNM2Q9H8M5 875 aa13.51□□□□□ -0.25
COL28A1-203ENST00000435823 TCP11L1Q9NUJ3 509 aa13.51□□□□□ -0.25
COL28A1-203ENST00000435823 FARP1Q9Y4F1 1045 aaPredicted RBP13.51□□□□□ -0.25
COL28A1-203ENST00000435823 PEX10O60683 326 aa13.5□□□□□ -0.25
COL28A1-203ENST00000435823 CDC45O75419 566 aa13.5□□□□□ -0.25
COL28A1-203ENST00000435823 PTH1RQ03431 593 aa13.5□□□□□ -0.25
COL28A1-203ENST00000435823 TRDNQ13061 729 aa13.5□□□□□ -0.25
COL28A1-203ENST00000435823 Q3C1V9 767 aa13.5□□□□□ -0.25
COL28A1-203ENST00000435823 CCDC178Q5BJE1 867 aa13.5□□□□□ -0.25
COL28A1-203ENST00000435823 NBPF11Q86T75 865 aa13.5□□□□□ -0.25
COL28A1-203ENST00000435823 NUP88Q99567 741 aaPredicted RBP13.5□□□□□ -0.25
COL28A1-203ENST00000435823 ESYT1Q9BSJ8 1104 aa13.5□□□□□ -0.25
COL28A1-203ENST00000435823 IL17RBQ9NRM6 502 aa13.5□□□□□ -0.25
COL28A1-203ENST00000435823 ISY1Q9ULR0 285 aaKnown RBP13.5□□□□□ -0.25
COL28A1-203ENST00000435823 KDM4AO75164 1064 aa13.49□□□□□ -0.25
COL28A1-203ENST00000435823 CNMDO75829 334 aa13.49□□□□□ -0.25
COL28A1-203ENST00000435823 TOP1P11387 765 aaKnown RBP13.49□□□□□ -0.25
COL28A1-203ENST00000435823 BMP3P12645 472 aa13.49□□□□□ -0.25
COL28A1-203ENST00000435823 FLT3LGP49771 235 aa13.49□□□□□ -0.25
COL28A1-203ENST00000435823 WDR78Q5VTH9 848 aa13.49□□□□□ -0.25
COL28A1-203ENST00000435823 IQCA1Q86XH1 822 aa13.49□□□□□ -0.25
COL28A1-203ENST00000435823 MAP4K1Q92918 833 aa13.49□□□□□ -0.25
COL28A1-203ENST00000435823 ARMC5Q96C12 935 aa13.49□□□□□ -0.25
COL28A1-203ENST00000435823 ATG4CQ96DT6 458 aa13.49□□□□□ -0.25
COL28A1-203ENST00000435823 GMCL1Q96IK5 515 aa13.49□□□□□ -0.25
COL28A1-203ENST00000435823 TTC14Q96N46 770 aa13.49□□□□□ -0.25
COL28A1-203ENST00000435823 SLF1Q9BQI6 1058 aa13.49□□□□□ -0.25
COL28A1-203ENST00000435823 BTBD7Q9P203 1132 aa13.49□□□□□ -0.25
COL28A1-203ENST00000435823 PPP1R9AQ9ULJ8 1098 aa13.49□□□□□ -0.25
COL28A1-203ENST00000435823 GABRQQ9UN88 632 aa13.49□□□□□ -0.25
COL28A1-203ENST00000435823 A0A0G2JMZ2 1700 aa13.48□□□□□ -0.25
COL28A1-203ENST00000435823 B4E1Z4 1266 aa13.48□□□□□ -0.25
COL28A1-203ENST00000435823 CYP21A2P08686 494 aa13.48□□□□□ -0.25
COL28A1-203ENST00000435823 SLC1A4P43007 532 aa13.48□□□□□ -0.25
COL28A1-203ENST00000435823 NOVP48745 357 aa13.48□□□□□ -0.25
COL28A1-203ENST00000435823 IRF5Q13568 498 aa13.48□□□□□ -0.25
COL28A1-203ENST00000435823 PLS1Q14651 629 aa13.48□□□□□ -0.25
COL28A1-203ENST00000435823 POTEEQ6S8J3 1075 aa13.48□□□□□ -0.25
COL28A1-203ENST00000435823 GPR142Q7Z601 462 aa13.48□□□□□ -0.25
COL28A1-203ENST00000435823 PLEKHH3Q7Z736 793 aa13.48□□□□□ -0.25
COL28A1-203ENST00000435823 PRPF38AQ8NAV1 312 aaKnown RBP13.48□□□□□ -0.25
COL28A1-203ENST00000435823 SLAIN1Q8ND83 568 aa13.48□□□□□ -0.25
COL28A1-203ENST00000435823 SOCS4Q8WXH5 440 aa13.48□□□□□ -0.25
COL28A1-203ENST00000435823 SPATC1LQ9H0A9 340 aa13.48□□□□□ -0.25
COL28A1-203ENST00000435823 PORCNQ9H237 461 aa13.48□□□□□ -0.25
COL28A1-203ENST00000435823 ANO2Q9NQ90 1003 aa13.48□□□□□ -0.25
COL28A1-203ENST00000435823 FBXO28Q9NVF7 368 aa13.48□□□□□ -0.25
COL28A1-203ENST00000435823 FEM1BQ9UK73 627 aa13.48□□□□□ -0.25
COL28A1-203ENST00000435823 CTDP1Q9Y5B0 961 aaPredicted RBP13.48□□□□□ -0.25
COL28A1-203ENST00000435823 RBM8AQ9Y5S9 174 aaKnown RBP13.48□□□□□ -0.25
COL28A1-203ENST00000435823 IVNS1ABPQ9Y6Y0 642 aa13.48□□□□□ -0.25
COL28A1-203ENST00000435823 RLFQ13129 1914 aa13.48□□□□□ -0.25
COL28A1-203ENST00000435823 PARP14Q460N5 1801 aa13.48□□□□□ -0.25
COL28A1-203ENST00000435823 VWA5AO00534 786 aa13.47□□□□□ -0.25
COL28A1-203ENST00000435823 MCCP23508 829 aa13.47□□□□□ -0.25
COL28A1-203ENST00000435823 GRK4P32298 578 aa13.47□□□□□ -0.25
COL28A1-203ENST00000435823 IKQ13123 557 aaPredicted RBP13.47□□□□□ -0.25
COL28A1-203ENST00000435823 RALYLQ86SE5 291 aaKnown RBP13.47□□□□□ -0.25
COL28A1-203ENST00000435823 DGKHQ86XP1 1220 aa13.47□□□□□ -0.25
COL28A1-203ENST00000435823 SHCBP1Q8NEM2 672 aa13.47□□□□□ -0.25
COL28A1-203ENST00000435823 DCAF4Q8WV16 495 aa13.47□□□□□ -0.25
COL28A1-203ENST00000435823 NUDT12Q9BQG2 462 aa13.47□□□□□ -0.25
COL28A1-203ENST00000435823 TMEM47Q9BQJ4 181 aa13.47□□□□□ -0.25
COL28A1-203ENST00000435823 ZKSCAN3Q9BRR0 538 aa13.47□□□□□ -0.25
COL28A1-203ENST00000435823 UBAC1Q9BSL1 405 aa13.47□□□□□ -0.25
COL28A1-203ENST00000435823 LSG1Q9H089 658 aaKnown RBP13.47□□□□□ -0.25
COL28A1-203ENST00000435823 BIN2Q9UBW5 565 aaPredicted RBP13.47□□□□□ -0.25
COL28A1-203ENST00000435823 ADAMTS5Q9UNA0 930 aa13.47□□□□□ -0.25
COL28A1-203ENST00000435823 MTMR7Q9Y216 660 aa13.47□□□□□ -0.25
COL28A1-203ENST00000435823 TMEM232C9JQI7 657 aa13.46□□□□□ -0.25
COL28A1-203ENST00000435823 ADCY3O60266 1144 aa13.46□□□□□ -0.25
COL28A1-203ENST00000435823 ZBED4O75132 1171 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms