RNA–Protein interactions for RNA: ENST00000433394.1

USP54-206, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-206ENST00000433394 PPP1R13LQ8WUF5 828 aa8.42□□□□□ -1.06
USP54-206ENST00000433394 UBL7Q96S82 380 aaPredicted RBP8.42□□□□□ -1.06
USP54-206ENST00000433394 GP6Q9HCN6 339 aa8.42□□□□□ -1.06
USP54-206ENST00000433394 PRDM5Q9NQX1 630 aaPredicted RBP8.42□□□□□ -1.06
USP54-206ENST00000433394 IFT57Q9NWB7 429 aa8.42□□□□□ -1.06
USP54-206ENST00000433394 NOP58Q9Y2X3 529 aaKnown RBP8.42□□□□□ -1.06
USP54-206ENST00000433394 SF3B6Q9Y3B4 125 aaKnown RBP8.42□□□□□ -1.06
USP54-206ENST00000433394 A0A1W2PQU0 124 aa8.41□□□□□ -1.06
USP54-206ENST00000433394 SLITRK5O94991 958 aa8.41□□□□□ -1.06
USP54-206ENST00000433394 KIR3DL1P43629 444 aa8.41□□□□□ -1.06
USP54-206ENST00000433394 CYP27C1Q4G0S4 372 aa8.41□□□□□ -1.06
USP54-206ENST00000433394 RCC1LQ96I51 464 aaKnown RBP8.41□□□□□ -1.06
USP54-206ENST00000433394 DHRS4Q9BTZ2 278 aa8.41□□□□□ -1.06
USP54-206ENST00000433394 PRR13Q9NZ81 148 aa8.41□□□□□ -1.06
USP54-206ENST00000433394 DIS3Q9Y2L1 958 aaKnown RBP8.41□□□□□ -1.06
USP54-206ENST00000433394 TRBV23-1A0A0A0MS06 115 aa8.4□□□□□ -1.06
USP54-206ENST00000433394 CBFA2T2O43439 604 aa8.4□□□□□ -1.06
USP54-206ENST00000433394 ITGAVP06756 1048 aa8.4□□□□□ -1.06
USP54-206ENST00000433394 PPP2R2AP63151 447 aa8.4□□□□□ -1.06
USP54-206ENST00000433394 SUMO1P63165 101 aaKnown RBP8.4□□□□□ -1.06
USP54-206ENST00000433394 CYP27A1Q02318 531 aa8.4□□□□□ -1.06
USP54-206ENST00000433394 CDK5R2Q13319 367 aa8.4□□□□□ -1.06
USP54-206ENST00000433394 SFRP5Q5T4F7 317 aa8.4□□□□□ -1.06
USP54-206ENST00000433394 ARHGAP27Q6ZUM4 889 aa8.4□□□□□ -1.06
USP54-206ENST00000433394 ZNF227Q86WZ6 799 aa8.4□□□□□ -1.06
USP54-206ENST00000433394 CLEC10AQ8IUN9 316 aa8.4□□□□□ -1.06
USP54-206ENST00000433394 DZIP1LQ8IYY4 767 aaKnown RBP8.4□□□□□ -1.06
USP54-206ENST00000433394 ZNF451Q9Y4E5 1061 aa8.4□□□□□ -1.06
USP54-206ENST00000433394 COL4A3BPQ9Y5P4 624 aa8.4□□□□□ -1.06
USP54-206ENST00000433394 GNAT3A8MTJ3 354 aa8.39□□□□□ -1.07
USP54-206ENST00000433394 ADCY3O60266 1144 aa8.39□□□□□ -1.07
USP54-206ENST00000433394 CLEC16AQ2KHT3 1053 aa8.39□□□□□ -1.07
USP54-206ENST00000433394 CWF19L1Q69YN2 538 aaKnown RBP8.39□□□□□ -1.07
USP54-206ENST00000433394 NSMFQ6X4W1 530 aa8.39□□□□□ -1.07
USP54-206ENST00000433394 ADCY4Q8NFM4 1077 aa8.39□□□□□ -1.07
USP54-206ENST00000433394 CCDC140Q96MF4 163 aa8.39□□□□□ -1.07
USP54-206ENST00000433394 SUSD2Q9UGT4 822 aa8.39□□□□□ -1.07
USP54-206ENST00000433394 FHOD1Q9Y613 1164 aa8.39□□□□□ -1.07
USP54-206ENST00000433394 DNAJC25-GNG10A0A024R161 153 aa8.38□□□□□ -1.07
USP54-206ENST00000433394 KRBA1A5PL33 1030 aa8.38□□□□□ -1.07
USP54-206ENST00000433394 FGFR1P11362 822 aa8.38□□□□□ -1.07
USP54-206ENST00000433394 SYTL5Q8TDW5 730 aaPredicted RBP8.38□□□□□ -1.07
USP54-206ENST00000433394 TBC1D32Q96NH3 1257 aa8.38□□□□□ -1.07
USP54-206ENST00000433394 DUSP23Q9BVJ7 150 aa8.38□□□□□ -1.07
USP54-206ENST00000433394 APEX2Q9UBZ4 518 aa8.38□□□□□ -1.07
USP54-206ENST00000433394 MRPS23Q9Y3D9 190 aaKnown RBP8.38□□□□□ -1.07
USP54-206ENST00000433394 CD2APQ9Y5K6 639 aa8.38□□□□□ -1.07
USP54-206ENST00000433394 PLD2O14939 933 aa8.37□□□□□ -1.07
USP54-206ENST00000433394 PRODHO43272 600 aa8.37□□□□□ -1.07
USP54-206ENST00000433394 FAM87AP0C7U9 286 aa8.37□□□□□ -1.07
USP54-206ENST00000433394 COL8A1P27658 744 aa8.37□□□□□ -1.07
USP54-206ENST00000433394 CNGA1P29973 690 aa8.37□□□□□ -1.07
USP54-206ENST00000433394 CT47A1Q5JQC4 288 aaPredicted RBP8.37□□□□□ -1.07
USP54-206ENST00000433394 NIM1KQ8IY84 436 aa8.37□□□□□ -1.07
USP54-206ENST00000433394 RIN3Q8TB24 985 aa8.37□□□□□ -1.07
USP54-206ENST00000433394 KCTD13Q8WZ19 329 aa8.37□□□□□ -1.07
USP54-206ENST00000433394 MFSD3Q96ES6 412 aa8.37□□□□□ -1.07
USP54-206ENST00000433394 MEGF10Q96KG7 1140 aa8.37□□□□□ -1.07
USP54-206ENST00000433394 PSMG3-AS1Q96PY0 264 aa8.37□□□□□ -1.07
USP54-206ENST00000433394 NOL6Q9H6R4 1146 aaKnown RBP8.37□□□□□ -1.07
USP54-206ENST00000433394 ARHGEF4Q9NR80 690 aa8.37□□□□□ -1.07
USP54-206ENST00000433394 EMC9Q9Y3B6 208 aa8.37□□□□□ -1.07
USP54-206ENST00000433394 DYNC1LI2O43237 492 aaPredicted RBP8.36□□□□□ -1.07
USP54-206ENST00000433394 KCNH1O95259 989 aa8.36□□□□□ -1.07
USP54-206ENST00000433394 CBX7O95931 251 aa8.36□□□□□ -1.07
USP54-206ENST00000433394 PABPC1P11940 636 aaKnown RBP8.36□□□□□ -1.07
USP54-206ENST00000433394 ITIH2P19823 946 aa8.36□□□□□ -1.07
USP54-206ENST00000433394 L1CAMP32004 1257 aa8.36□□□□□ -1.07
USP54-206ENST00000433394 KCNJ6P48051 423 aa8.36□□□□□ -1.07
USP54-206ENST00000433394 AMPD2Q01433 879 aa8.36□□□□□ -1.07
USP54-206ENST00000433394 POU4F1Q01851 419 aa8.36□□□□□ -1.07
USP54-206ENST00000433394 GRB10Q13322 594 aa8.36□□□□□ -1.07
USP54-206ENST00000433394 PPP2R5DQ14738 602 aa8.36□□□□□ -1.07
USP54-206ENST00000433394 TKFCQ3LXA3 575 aa8.36□□□□□ -1.07
USP54-206ENST00000433394 FNDC3BQ53EP0 1204 aaKnown RBP8.36□□□□□ -1.07
USP54-206ENST00000433394 DUSP27Q5VZP5 1158 aa8.36□□□□□ -1.07
USP54-206ENST00000433394 TRIM59Q8IWR1 403 aa8.36□□□□□ -1.07
USP54-206ENST00000433394 ARMC10Q8N2F6 343 aa8.36□□□□□ -1.07
USP54-206ENST00000433394 ARHGEF39Q8N4T4 335 aa8.36□□□□□ -1.07
USP54-206ENST00000433394 FIBCD1Q8N539 461 aa8.36□□□□□ -1.07
USP54-206ENST00000433394 NINJ1Q92982 152 aa8.36□□□□□ -1.07
USP54-206ENST00000433394 FAM83CQ9BQN1 747 aa8.36□□□□□ -1.07
USP54-206ENST00000433394 MRPL4Q9BYD3 311 aaKnown RBP8.36□□□□□ -1.07
USP54-206ENST00000433394 STOML1Q9UBI4 398 aa8.36□□□□□ -1.07
USP54-206ENST00000433394 CGGBP1Q9UFW8 167 aaPredicted RBP8.36□□□□□ -1.07
USP54-206ENST00000433394 RFPL3O75679 317 aa8.35□□□□□ -1.07
USP54-206ENST00000433394 CPP00450 1065 aa8.35□□□□□ -1.07
USP54-206ENST00000433394 ZNF445P59923 1031 aa8.35□□□□□ -1.07
USP54-206ENST00000433394 KCNMA1Q12791 1236 aa8.35□□□□□ -1.07
USP54-206ENST00000433394 FAM209AQ5JX71 171 aa8.35□□□□□ -1.07
USP54-206ENST00000433394 SEZ6L2Q6UXD5 910 aa8.35□□□□□ -1.07
USP54-206ENST00000433394 PIWIL2Q8TC59 973 aaKnown RBP8.35□□□□□ -1.07
USP54-206ENST00000433394 ENOX1Q8TC92 643 aaKnown RBP8.35□□□□□ -1.07
USP54-206ENST00000433394 BRF1Q92994 677 aa8.35□□□□□ -1.07
USP54-206ENST00000433394 VWCEQ96DN2 955 aa8.35□□□□□ -1.07
USP54-206ENST00000433394 ZDHHC15Q96MV8 337 aa8.35□□□□□ -1.07
USP54-206ENST00000433394 IER2Q9BTL4 223 aa8.35□□□□□ -1.07
USP54-206ENST00000433394 PRDM14Q9GZV8 571 aa8.35□□□□□ -1.07
USP54-206ENST00000433394 NCOA5Q9HCD5 579 aaKnown RBP8.35□□□□□ -1.07
USP54-206ENST00000433394 PCDH12Q9NPG4 1184 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms