RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 UBXN6Q9BZV1 441 aa12.77□□□□□ -0.36
USP4-205ENST00000431357 SH3GLB2Q9NR46 395 aa12.77□□□□□ -0.36
USP4-205ENST00000431357 MYO1AQ9UBC5 1043 aa12.77□□□□□ -0.36
USP4-205ENST00000431357 ARPP21Q9UBL0 812 aaPredicted RBP12.77□□□□□ -0.36
USP4-205ENST00000431357 CDC23Q9UJX2 597 aa12.77□□□□□ -0.36
USP4-205ENST00000431357 MINPP1Q9UNW1 487 aa12.77□□□□□ -0.36
USP4-205ENST00000431357 CTNND2Q9UQB3 1225 aa12.77□□□□□ -0.36
USP4-205ENST00000431357 MYH2Q9UKX2 1941 aa12.77□□□□□ -0.37
USP4-205ENST00000431357 CYP2D7A0A087X1C5 515 aa12.77□□□□□ -0.37
USP4-205ENST00000431357 hCG_1642624A0A1W2PR95 340 aa12.77□□□□□ -0.37
USP4-205ENST00000431357 CCDC151A5D8V7 595 aa12.77□□□□□ -0.37
USP4-205ENST00000431357 ZBTB22O15209 634 aa12.77□□□□□ -0.37
USP4-205ENST00000431357 CASP14P31944 242 aa12.77□□□□□ -0.37
USP4-205ENST00000431357 CPLX3Q8WVH0 158 aa12.77□□□□□ -0.37
USP4-205ENST00000431357 NSUN4Q96CB9 384 aaKnown RBP12.77□□□□□ -0.37
USP4-205ENST00000431357 PARD6BQ9BYG5 372 aa12.77□□□□□ -0.37
USP4-205ENST00000431357 WNT7AO00755 349 aa12.76□□□□□ -0.37
USP4-205ENST00000431357 N4BP3O15049 544 aa12.76□□□□□ -0.37
USP4-205ENST00000431357 TBC1D8O95759 1140 aa12.76□□□□□ -0.37
USP4-205ENST00000431357 GYPCP04921 128 aa12.76□□□□□ -0.37
USP4-205ENST00000431357 CASP1P29466 404 aa12.76□□□□□ -0.37
USP4-205ENST00000431357 COPB1P53618 953 aaKnown RBP12.76□□□□□ -0.37
USP4-205ENST00000431357 KRT31Q15323 416 aa12.76□□□□□ -0.37
USP4-205ENST00000431357 CYP26C1Q6V0L0 522 aa12.76□□□□□ -0.37
USP4-205ENST00000431357 PIK3AP1Q6ZUJ8 805 aa12.76□□□□□ -0.37
USP4-205ENST00000431357 YY1AP1Q9H869 796 aa12.76□□□□□ -0.37
USP4-205ENST00000431357 LZTFL1Q9NQ48 299 aa12.76□□□□□ -0.37
USP4-205ENST00000431357 RNF216Q9NWF9 866 aaPredicted RBP12.76□□□□□ -0.37
USP4-205ENST00000431357 A0A1B0GUL6 1792 aa12.76□□□□□ -0.37
USP4-205ENST00000431357 SCN7AQ01118 1682 aa12.76□□□□□ -0.37
USP4-205ENST00000431357 CTAGE9A4FU28 777 aa12.76□□□□□ -0.37
USP4-205ENST00000431357 VGLL3A8MV65 326 aa12.76□□□□□ -0.37
USP4-205ENST00000431357 H7C1D1 291 aa12.76□□□□□ -0.37
USP4-205ENST00000431357 SMIM22K7EJ46 135 aa12.76□□□□□ -0.37
USP4-205ENST00000431357 CHMP4BP1P59074 171 aa12.76□□□□□ -0.37
USP4-205ENST00000431357 ERFEQ4G0M1 354 aa12.76□□□□□ -0.37
USP4-205ENST00000431357 CCDC178Q5BJE1 867 aa12.76□□□□□ -0.37
USP4-205ENST00000431357 SLC10A5Q5PT55 438 aa12.76□□□□□ -0.37
USP4-205ENST00000431357 HOMEZQ8IX15 550 aa12.76□□□□□ -0.37
USP4-205ENST00000431357 SMYD4Q8IYR2 804 aaPredicted RBP12.76□□□□□ -0.37
USP4-205ENST00000431357 DCP1AQ9NPI6 582 aaPredicted RBP12.76□□□□□ -0.37
USP4-205ENST00000431357 ST7Q9NRC1 585 aa12.76□□□□□ -0.37
USP4-205ENST00000431357 SEC31AO94979 1220 aaKnown RBP12.75□□□□□ -0.37
USP4-205ENST00000431357 RPN1P04843 607 aaKnown RBP12.75□□□□□ -0.37
USP4-205ENST00000431357 MYL1P05976 194 aa12.75□□□□□ -0.37
USP4-205ENST00000431357 TUBBP07437 444 aa12.75□□□□□ -0.37
USP4-205ENST00000431357 CYP2C19P33261 490 aa12.75□□□□□ -0.37
USP4-205ENST00000431357 TCP11X2Q5H9J9 407 aa12.75□□□□□ -0.37
USP4-205ENST00000431357 ZNF384Q8TF68 577 aa12.75□□□□□ -0.37
USP4-205ENST00000431357 HNRNPLLQ8WVV9 542 aaKnown RBP12.75□□□□□ -0.37
USP4-205ENST00000431357 NELFBQ8WX92 580 aa12.75□□□□□ -0.37
USP4-205ENST00000431357 ANKRD2Q9GZV1 360 aa12.75□□□□□ -0.37
USP4-205ENST00000431357 ABHD10Q9NUJ1 306 aa12.75□□□□□ -0.37
USP4-205ENST00000431357 KCNJ18B7U540 433 aa12.74□□□□□ -0.37
USP4-205ENST00000431357 ADAMTS2O95450 1211 aa12.74□□□□□ -0.37
USP4-205ENST00000431357 MCM7P33993 719 aa12.74□□□□□ -0.37
USP4-205ENST00000431357 GNAQP50148 359 aa12.74□□□□□ -0.37
USP4-205ENST00000431357 FXR1P51114 621 aaKnown RBP eCLIP12.74□□□□□ -0.37
USP4-205ENST00000431357 MECOMQ03112 1051 aa12.74□□□□□ -0.37
USP4-205ENST00000431357 KCNJ12Q14500 433 aa12.74□□□□□ -0.37
USP4-205ENST00000431357 NOM1Q5C9Z4 860 aaKnown RBP12.74□□□□□ -0.37
USP4-205ENST00000431357 ZNF569Q5MCW4 686 aa12.74□□□□□ -0.37
USP4-205ENST00000431357 GALNT17Q6IS24 598 aa12.74□□□□□ -0.37
USP4-205ENST00000431357 BLIDQ8IZY5 108 aa12.74□□□□□ -0.37
USP4-205ENST00000431357 BLZF1Q9H2G9 400 aa12.74□□□□□ -0.37
USP4-205ENST00000431357 COL16A1Q07092 1604 aaPredicted RBP12.74□□□□□ -0.37
USP4-205ENST00000431357 A0A0G2JS52 829 aa12.74□□□□□ -0.37
USP4-205ENST00000431357 TSPY2A6NKD2 308 aa12.74□□□□□ -0.37
USP4-205ENST00000431357 PIP4K2BP78356 416 aa12.74□□□□□ -0.37
USP4-205ENST00000431357 WHAMMP3Q1A5X7 153 aa12.74□□□□□ -0.37
USP4-205ENST00000431357 KIF4BQ2VIQ3 1234 aa12.74□□□□□ -0.37
USP4-205ENST00000431357 WWC2Q6AWC2 1192 aa12.74□□□□□ -0.37
USP4-205ENST00000431357 DGKHQ86XP1 1220 aa12.74□□□□□ -0.37
USP4-205ENST00000431357 MSL3Q8N5Y2 521 aaKnown RBP12.74□□□□□ -0.37
USP4-205ENST00000431357 C4orf32Q8N8J7 132 aa12.74□□□□□ -0.37
USP4-205ENST00000431357 ANKS1AQ92625 1134 aa12.74□□□□□ -0.37
USP4-205ENST00000431357 ACSBG1Q96GR2 724 aa12.74□□□□□ -0.37
USP4-205ENST00000431357 NUP88Q99567 741 aaPredicted RBP12.74□□□□□ -0.37
USP4-205ENST00000431357 NAPGQ99747 312 aaPredicted RBP12.74□□□□□ -0.37
USP4-205ENST00000431357 CALCOCO1Q9P1Z2 691 aa12.74□□□□□ -0.37
USP4-205ENST00000431357 PCDHA4Q9UN74 947 aa12.74□□□□□ -0.37
USP4-205ENST00000431357 BAZ2AQ9UIF9 1905 aaKnown RBP12.74□□□□□ -0.37
USP4-205ENST00000431357 SPATA31A1Q5TZJ5 1347 aa12.74□□□□□ -0.37
USP4-205ENST00000431357 ERLIN1O75477 346 aa12.73□□□□□ -0.37
USP4-205ENST00000431357 HIBADHP31937 336 aaKnown RBP12.73□□□□□ -0.37
USP4-205ENST00000431357 CCT6AP40227 531 aaKnown RBP12.73□□□□□ -0.37
USP4-205ENST00000431357 STAT6P42226 847 aa12.73□□□□□ -0.37
USP4-205ENST00000431357 SMC1AQ14683 1233 aaKnown RBP12.73□□□□□ -0.37
USP4-205ENST00000431357 KCNB1Q14721 858 aa12.73□□□□□ -0.37
USP4-205ENST00000431357 IL17AQ16552 155 aa12.73□□□□□ -0.37
USP4-205ENST00000431357 SPTY2D1Q68D10 685 aaPredicted RBP12.73□□□□□ -0.37
USP4-205ENST00000431357 MSANTD4Q8NCY6 345 aa12.73□□□□□ -0.37
USP4-205ENST00000431357 STAMQ92783 540 aa12.73□□□□□ -0.37
USP4-205ENST00000431357 MTRQ99707 1265 aa12.73□□□□□ -0.37
USP4-205ENST00000431357 FUT8Q9BYC5 575 aa12.73□□□□□ -0.37
USP4-205ENST00000431357 IRX2Q9BZI1 471 aaPredicted RBP12.73□□□□□ -0.37
USP4-205ENST00000431357 VPS16Q9H269 839 aa12.73□□□□□ -0.37
USP4-205ENST00000431357 EPC1Q9H2F5 836 aa12.73□□□□□ -0.37
USP4-205ENST00000431357 KAT14Q9H8E8 782 aa12.73□□□□□ -0.37
USP4-205ENST00000431357 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms