RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 SYTL5Q8TDW5 730 aaPredicted RBP8.96□□□□□ -0.98
CCDC88A-206ENST00000430086 SHOXO15266 292 aa8.95□□□□□ -0.98
CCDC88A-206ENST00000430086 SLC7A5Q01650 507 aa8.95□□□□□ -0.98
CCDC88A-206ENST00000430086 CLEC16AQ2KHT3 1053 aa8.95□□□□□ -0.98
CCDC88A-206ENST00000430086 TMC3Q7Z5M5 1100 aa8.95□□□□□ -0.98
CCDC88A-206ENST00000430086 NBPF11Q86T75 865 aa8.95□□□□□ -0.98
CCDC88A-206ENST00000430086 TP53INP2Q8IXH6 220 aa8.95□□□□□ -0.98
CCDC88A-206ENST00000430086 DAGLBQ8NCG7 672 aa8.95□□□□□ -0.98
CCDC88A-206ENST00000430086 KLHL6Q8WZ60 621 aa8.95□□□□□ -0.98
CCDC88A-206ENST00000430086 ARMC5Q96C12 935 aa8.95□□□□□ -0.98
CCDC88A-206ENST00000430086 HDAC8Q9BY41 377 aa8.95□□□□□ -0.98
CCDC88A-206ENST00000430086 WASH4PA8MWX3 477 aa8.94□□□□□ -0.98
CCDC88A-206ENST00000430086 SIGLEC6O43699 453 aa8.94□□□□□ -0.98
CCDC88A-206ENST00000430086 ESR1P03372 595 aa8.94□□□□□ -0.98
CCDC88A-206ENST00000430086 TP53P04637 393 aaPredicted RBP8.94□□□□□ -0.98
CCDC88A-206ENST00000430086 SF3A1Q15459 793 aaKnown RBP8.94□□□□□ -0.98
CCDC88A-206ENST00000430086 FBXL21Q9UKT6 434 aa8.94□□□□□ -0.98
CCDC88A-206ENST00000430086 PCDHB10Q9UN67 800 aa8.94□□□□□ -0.98
CCDC88A-206ENST00000430086 ZP2Q05996 745 aa8.93□□□□□ -0.98
CCDC88A-206ENST00000430086 DCAF15Q66K64 600 aa8.93□□□□□ -0.98
CCDC88A-206ENST00000430086 VHLLQ6RSH7 139 aa8.93□□□□□ -0.98
CCDC88A-206ENST00000430086 ANKS3Q6ZW76 656 aa8.93□□□□□ -0.98
CCDC88A-206ENST00000430086 ZNF655Q8N720 491 aaPredicted RBP8.93□□□□□ -0.98
CCDC88A-206ENST00000430086 DUSP13Q9UII6 198 aa8.93□□□□□ -0.98
CCDC88A-206ENST00000430086 CBFA2T2O43439 604 aa8.92□□□□□ -0.98
CCDC88A-206ENST00000430086 KLF4O43474 513 aa8.92□□□□□ -0.98
CCDC88A-206ENST00000430086 STK10O94804 968 aaKnown RBP8.92□□□□□ -0.98
CCDC88A-206ENST00000430086 PRAMEF1O95521 474 aa8.92□□□□□ -0.98
CCDC88A-206ENST00000430086 CD247P20963 164 aa8.92□□□□□ -0.98
CCDC88A-206ENST00000430086 NCAPHQ15003 741 aa8.92□□□□□ -0.98
CCDC88A-206ENST00000430086 FXNQ16595 210 aa8.92□□□□□ -0.98
CCDC88A-206ENST00000430086 SLC23A3Q6PIS1 610 aa8.92□□□□□ -0.98
CCDC88A-206ENST00000430086 CREG2Q8IUH2 290 aa8.92□□□□□ -0.98
CCDC88A-206ENST00000430086 HAUS7Q99871 368 aa8.92□□□□□ -0.98
CCDC88A-206ENST00000430086 CARS2Q9HA77 564 aaKnown RBP8.92□□□□□ -0.98
CCDC88A-206ENST00000430086 GP6Q9HCN6 339 aa8.92□□□□□ -0.98
CCDC88A-206ENST00000430086 CHST7Q9NS84 486 aa8.92□□□□□ -0.98
CCDC88A-206ENST00000430086 OAS3Q9Y6K5 1087 aaKnown RBP8.92□□□□□ -0.98
CCDC88A-206ENST00000430086 A0A087WZG4 1122 aa8.91□□□□□ -0.98
CCDC88A-206ENST00000430086 PLCL1Q15111 1095 aa8.91□□□□□ -0.98
CCDC88A-206ENST00000430086 TCEAL1Q15170 157 aa8.91□□□□□ -0.98
CCDC88A-206ENST00000430086 KIAA1211LQ6NV74 962 aa8.91□□□□□ -0.98
CCDC88A-206ENST00000430086 ABI1Q8IZP0 508 aa8.91□□□□□ -0.98
CCDC88A-206ENST00000430086 HNRNPLLQ8WVV9 542 aaKnown RBP8.91□□□□□ -0.98
CCDC88A-206ENST00000430086 SREK1Q8WXA9 508 aaKnown RBP8.91□□□□□ -0.98
CCDC88A-206ENST00000430086 KLHL25Q9H0H3 589 aa8.91□□□□□ -0.98
CCDC88A-206ENST00000430086 FAM86C1Q9NVL1 165 aa8.91□□□□□ -0.98
CCDC88A-206ENST00000430086 GFOD1Q9NXC2 390 aa8.91□□□□□ -0.98
CCDC88A-206ENST00000430086 R3HCC1Q9Y3T6 440 aaKnown RBP8.91□□□□□ -0.98
CCDC88A-206ENST00000430086 ZNF451Q9Y4E5 1061 aa8.91□□□□□ -0.98
CCDC88A-206ENST00000430086 LARP1BQ659C4 914 aaKnown RBP8.9□□□□□ -0.98
CCDC88A-206ENST00000430086 HEATR6Q6AI08 1181 aaKnown RBP8.9□□□□□ -0.98
CCDC88A-206ENST00000430086 PI4K2BQ8TCG2 481 aa8.9□□□□□ -0.98
CCDC88A-206ENST00000430086 TCTN2Q96GX1 697 aa8.9□□□□□ -0.98
CCDC88A-206ENST00000430086 SUSD2Q9UGT4 822 aa8.9□□□□□ -0.98
CCDC88A-206ENST00000430086 FHOD1Q9Y613 1164 aa8.9□□□□□ -0.98
CCDC88A-206ENST00000430086 ITGA4P13612 1032 aa8.89□□□□□ -0.99
CCDC88A-206ENST00000430086 ZNF445P59923 1031 aa8.89□□□□□ -0.99
CCDC88A-206ENST00000430086 RBL2Q08999 1139 aa8.89□□□□□ -0.99
CCDC88A-206ENST00000430086 C6orf15Q6UXA7 325 aaPredicted RBP8.89□□□□□ -0.99
CCDC88A-206ENST00000430086 FAM178BQ8IXR5 827 aa8.89□□□□□ -0.99
CCDC88A-206ENST00000430086 CKAP2LQ8IYA6 745 aa8.89□□□□□ -0.99
CCDC88A-206ENST00000430086 USHBP1Q8N6Y0 703 aa8.89□□□□□ -0.99
CCDC88A-206ENST00000430086 WHRNQ9P202 907 aa8.89□□□□□ -0.99
CCDC88A-206ENST00000430086 PCDHA11Q9Y5I1 949 aa8.89□□□□□ -0.99
CCDC88A-206ENST00000430086 EPHX1P07099 455 aa8.88□□□□□ -0.99
CCDC88A-206ENST00000430086 LTKP29376 864 aa8.88□□□□□ -0.99
CCDC88A-206ENST00000430086 GTF2F1P35269 517 aaKnown RBP eCLIP8.88□□□□□ -0.99
CCDC88A-206ENST00000430086 ZNF143P52747 638 aaPredicted RBP8.88□□□□□ -0.99
CCDC88A-206ENST00000430086 EGR3Q06889 387 aa8.88□□□□□ -0.99
CCDC88A-206ENST00000430086 RAB33AQ14088 237 aa8.88□□□□□ -0.99
CCDC88A-206ENST00000430086 ZNF792Q3KQV3 632 aa8.88□□□□□ -0.99
CCDC88A-206ENST00000430086 NOL9Q5SY16 702 aaKnown RBP8.88□□□□□ -0.99
CCDC88A-206ENST00000430086 NBPF6Q5VWK0 638 aa8.88□□□□□ -0.99
CCDC88A-206ENST00000430086 RNF111Q6ZNA4 994 aa8.88□□□□□ -0.99
CCDC88A-206ENST00000430086 LINC00116Q8NCU8 138 aa8.88□□□□□ -0.99
CCDC88A-206ENST00000430086 NBPF4Q96M43 638 aa8.88□□□□□ -0.99
CCDC88A-206ENST00000430086 HIRIP3Q9BW71 556 aaPredicted RBP8.88□□□□□ -0.99
CCDC88A-206ENST00000430086 GBP3Q9H0R5 595 aa8.88□□□□□ -0.99
CCDC88A-206ENST00000430086 MBNL3Q9NUK0 354 aaKnown RBP8.88□□□□□ -0.99
CCDC88A-206ENST00000430086 ADAMTS6Q9UKP5 1117 aa8.88□□□□□ -0.99
CCDC88A-206ENST00000430086 MINPP1Q9UNW1 487 aa8.88□□□□□ -0.99
CCDC88A-206ENST00000430086 ANKRD34BA5PLL1 514 aa8.87□□□□□ -0.99
CCDC88A-206ENST00000430086 RNASE1P07998 156 aaKnown RBP8.87□□□□□ -0.99
CCDC88A-206ENST00000430086 CTSKP43235 329 aa8.87□□□□□ -0.99
CCDC88A-206ENST00000430086 CBLL1Q75N03 491 aa8.87□□□□□ -0.99
CCDC88A-206ENST00000430086 MICAL1Q8TDZ2 1067 aa8.87□□□□□ -0.99
CCDC88A-206ENST00000430086 ADGRE2Q9UHX3 823 aa8.87□□□□□ -0.99
CCDC88A-206ENST00000430086 DIS3Q9Y2L1 958 aaKnown RBP8.87□□□□□ -0.99
CCDC88A-206ENST00000430086 ZNF281Q9Y2X9 895 aa8.87□□□□□ -0.99
CCDC88A-206ENST00000430086 DDAH1O94760 285 aa8.86□□□□□ -0.99
CCDC88A-206ENST00000430086 GSNP06396 782 aa8.86□□□□□ -0.99
CCDC88A-206ENST00000430086 NAT2P11245 290 aa8.86□□□□□ -0.99
CCDC88A-206ENST00000430086 BMP8BP34820 402 aa8.86□□□□□ -0.99
CCDC88A-206ENST00000430086 PCBP3P57721 371 aaKnown RBP8.86□□□□□ -0.99
CCDC88A-206ENST00000430086 TEKQ02763 1124 aa8.86□□□□□ -0.99
CCDC88A-206ENST00000430086 DDR2Q16832 855 aa8.86□□□□□ -0.99
CCDC88A-206ENST00000430086 CELF2-AS1Q8N7Q2 184 aa8.86□□□□□ -0.99
CCDC88A-206ENST00000430086 DHX38Q92620 1227 aaKnown RBP8.86□□□□□ -0.99
CCDC88A-206ENST00000430086 CCDC120Q96HB5 630 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms