RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 TCP11X2Q5H9J9 407 aa6.48□□□□□ -1.37
CCDC88A-203ENST00000412148 ISM2Q6H9L7 571 aa6.48□□□□□ -1.37
CCDC88A-203ENST00000412148 PI16Q6UXB8 463 aa6.48□□□□□ -1.37
CCDC88A-203ENST00000412148 PDILTQ8N807 584 aa6.48□□□□□ -1.37
CCDC88A-203ENST00000412148 ESR2Q92731 530 aa6.48□□□□□ -1.37
CCDC88A-203ENST00000412148 NUP58Q9BVL2 599 aa6.48□□□□□ -1.37
CCDC88A-203ENST00000412148 CUEDC2Q9H467 287 aa6.48□□□□□ -1.37
CCDC88A-203ENST00000412148 BRMS1Q9HCU9 246 aa6.48□□□□□ -1.37
CCDC88A-203ENST00000412148 WDR70Q9NW82 654 aa6.48□□□□□ -1.37
CCDC88A-203ENST00000412148 MYO6Q9UM54 1294 aa6.48□□□□□ -1.37
CCDC88A-203ENST00000412148 SBF2Q86WG5 1849 aa6.48□□□□□ -1.37
CCDC88A-203ENST00000412148 XDHP47989 1333 aa6.48□□□□□ -1.37
CCDC88A-203ENST00000412148 ATXN2Q99700 1313 aaKnown RBP6.48□□□□□ -1.37
CCDC88A-203ENST00000412148 A0A087X0B3 334 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 A0A1W2PQJ5 194 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 LAD1O00515 517 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 IRS4O14654 1257 aaPredicted RBP6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 NPHP1O15259 732 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 ORC4O43929 436 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 SHOX2O60902 331 aaPredicted RBP6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 IDH1O75874 414 aaKnown RBP6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 MBD4O95243 580 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 CPP00450 1065 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 COPB1P53618 953 aaKnown RBP6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 USP14P54578 494 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 ERVK-24P63145 666 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 CKAP4Q07065 602 aaKnown RBP6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 CASP8Q14790 479 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 KRT31Q15323 416 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 CCDC170Q8IYT3 715 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 ZNF507Q8TCN5 953 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 FAM89AQ96GI7 184 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 PNKPQ96T60 521 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 FAM117AQ9C073 453 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 SEC31BQ9NQW1 1179 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 CNNM1Q9NRU3 951 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 CAPN11Q9UMQ6 739 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 ABCB11O95342 1321 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 ERICH4A6NGS2 130 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 LGALS16A8MUM7 142 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 TNFRSF8P28908 595 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 HNRNPH3P31942 346 aaKnown RBP6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 CASP14P31944 242 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 FXR1P51114 621 aaKnown RBP eCLIP6.47□□□□□ -1.373e-8■■■■□ 23.7
CCDC88A-203ENST00000412148 PPARAQ07869 468 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 PAK1Q13153 545 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 ORC2Q13416 577 aaPredicted RBP6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 ZNF569Q5MCW4 686 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 GALNT17Q6IS24 598 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 LEKR1Q6ZMV7 388 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 SLC35F6Q8N357 371 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 CCDC148Q8NFR7 591 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 SYMPKQ92797 1274 aaKnown RBP6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 SYTL4Q96C24 671 aaPredicted RBP6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 SHISA4Q96DD7 197 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 FAM107BQ9H098 131 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 RASSF4Q9H2L5 321 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 TMOD3Q9NYL9 352 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 ZC3H4Q9UPT8 1303 aaKnown RBP6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 NRAPQ86VF7 1730 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 CARNS1A5YM72 827 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 PPFIA3O75145 1194 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 PRPF6O94906 941 aaKnown RBP6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 APPP05067 770 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 CYP19A1P11511 503 aaPredicted RBP6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 PRPHP41219 470 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 KRT83P78385 493 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 GOLGA8FQ08AF8 430 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 GOLGA8DPQ0D2H9 430 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 TROAPQ12815 778 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 RASGRF1Q13972 1273 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 MTF1Q14872 753 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 KIF4BQ2VIQ3 1234 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 TRMT44Q8IYL2 757 aaKnown RBP6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 FNBP4Q8N3X1 1017 aaPredicted RBP6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 MAGEB6Q8N7X4 407 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 DAGLBQ8NCG7 672 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 ANKS1AQ92625 1134 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 DESI2Q9BSY9 194 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 TTYH3Q9C0H2 523 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 ABCB6Q9NP58 842 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 EPN1Q9Y6I3 576 aaPredicted RBP6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 CNTNAP5Q8WYK1 1306 aa6.47□□□□□ -1.37
CCDC88A-203ENST00000412148 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 MYO1CO00159 1063 aa6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 POLR3GO15318 223 aaPredicted RBP6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 NDUFA10O95299 355 aa6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 LCA5LO95447 670 aa6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 CALML3P27482 149 aa6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 NR5A1Q13285 461 aa6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 KARSQ15046 597 aaKnown RBP6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 NOM1Q5C9Z4 860 aaKnown RBP6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 TTC38Q5R3I4 469 aa6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 EMC10Q5UCC4 262 aa6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 IQCEQ6IPM2 695 aa6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 TMTC3Q6ZXV5 915 aa6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 C1orf131Q8NDD1 294 aaKnown RBP6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 NEK11Q8NG66 645 aa6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 OR8K1Q8NGG5 319 aa6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 RBM33Q96EV2 1170 aaKnown RBP6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms