RNA–Protein interactions for RNA: ENST00000409727.5

CHMP3-204, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,851 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-204ENST00000409727 CCDC84Q86UT8 332 aaPredicted RBP14.39□□□□□ -0.11
CHMP3-204ENST00000409727 GPKOWQ92917 476 aaPredicted RBP eCLIP14.39□□□□□ -0.11
CHMP3-204ENST00000409727 LZTS2Q9BRK4 669 aa14.39□□□□□ -0.11
CHMP3-204ENST00000409727 ADARB2Q9NS39 739 aaKnown RBP14.39□□□□□ -0.11
CHMP3-204ENST00000409727 FZD1Q9UP38 647 aa14.39□□□□□ -0.11
CHMP3-204ENST00000409727 DDX49Q9Y6V7 483 aaKnown RBP14.39□□□□□ -0.11
CHMP3-204ENST00000409727 BTBD18B2RXH4 712 aa14.38□□□□□ -0.11
CHMP3-204ENST00000409727 GRIN3BO60391 1043 aa14.38□□□□□ -0.11
CHMP3-204ENST00000409727 GADD45BO75293 160 aaPredicted RBP14.38□□□□□ -0.11
CHMP3-204ENST00000409727 CAPN15O75808 1086 aa14.38□□□□□ -0.11
CHMP3-204ENST00000409727 PTMSP20962 102 aa14.38□□□□□ -0.11
CHMP3-204ENST00000409727 SLC16A2P36021 539 aa14.38□□□□□ -0.11
CHMP3-204ENST00000409727 CAP2P40123 477 aa14.38□□□□□ -0.11
CHMP3-204ENST00000409727 ECE1P42892 770 aa14.38□□□□□ -0.11
CHMP3-204ENST00000409727 SAFBQ15424 915 aaKnown RBP eCLIP14.38□□□□□ -0.11
CHMP3-204ENST00000409727 PFKFB3Q16875 520 aaPredicted RBP14.38□□□□□ -0.11
CHMP3-204ENST00000409727 ASPRV1Q53RT3 343 aa14.38□□□□□ -0.11
CHMP3-204ENST00000409727 SLFN13Q68D06 897 aa14.38□□□□□ -0.11
CHMP3-204ENST00000409727 TTBK2Q6IQ55 1244 aa14.38□□□□□ -0.11
CHMP3-204ENST00000409727 GZF1Q9H116 711 aaPredicted RBP14.38□□□□□ -0.11
CHMP3-204ENST00000409727 A0A1W2PRG0 241 aa14.38□□□□□ -0.11
CHMP3-204ENST00000409727 SNHG28P0DPA3 235 aa14.38□□□□□ -0.11
CHMP3-204ENST00000409727 SLC1A4P43007 532 aa14.38□□□□□ -0.11
CHMP3-204ENST00000409727 ZNF543Q08ER8 600 aa14.38□□□□□ -0.11
CHMP3-204ENST00000409727 ZYXQ15942 572 aaKnown RBP14.38□□□□□ -0.11
CHMP3-204ENST00000409727 DLK2Q6UY11 383 aa14.38□□□□□ -0.11
CHMP3-204ENST00000409727 HEATR3Q7Z4Q2 680 aa14.38□□□□□ -0.11
CHMP3-204ENST00000409727 DIS3L2Q8IYB7 885 aaKnown RBP14.38□□□□□ -0.11
CHMP3-204ENST00000409727 SPICE1Q8N0Z3 855 aa14.38□□□□□ -0.11
CHMP3-204ENST00000409727 ACER1Q8TDN7 264 aa14.38□□□□□ -0.11
CHMP3-204ENST00000409727 MKL1Q969V6 931 aa14.38□□□□□ -0.11
CHMP3-204ENST00000409727 NUP88Q99567 741 aaPredicted RBP14.38□□□□□ -0.11
CHMP3-204ENST00000409727 OXER1Q8TDS5 423 aa14.37□□□□□ -0.11
CHMP3-204ENST00000409727 SPATA32Q96LK8 384 aa14.37□□□□□ -0.11
CHMP3-204ENST00000409727 PIGSQ96S52 555 aa14.37□□□□□ -0.11
CHMP3-204ENST00000409727 SPZ1Q9BXG8 430 aa14.37□□□□□ -0.11
CHMP3-204ENST00000409727 ARHGEF10LQ9HCE6 1279 aa14.37□□□□□ -0.11
CHMP3-204ENST00000409727 PHF20L1A8MW92 1017 aa14.36□□□□□ -0.11
CHMP3-204ENST00000409727 F5H6K3 240 aa14.36□□□□□ -0.11
CHMP3-204ENST00000409727 MAP3K10Q02779 954 aa14.36□□□□□ -0.11
CHMP3-204ENST00000409727 KLRC3Q07444 240 aa14.36□□□□□ -0.11
CHMP3-204ENST00000409727 NR5A1Q13285 461 aa14.36□□□□□ -0.11
CHMP3-204ENST00000409727 PRKG1Q13976 671 aa14.36□□□□□ -0.11
CHMP3-204ENST00000409727 BRAPQ7Z569 592 aa14.36□□□□□ -0.11
CHMP3-204ENST00000409727 RRP36Q96EU6 259 aaKnown RBP14.36□□□□□ -0.11
CHMP3-204ENST00000409727 ZNF396Q96N95 335 aaPredicted RBP14.36□□□□□ -0.11
CHMP3-204ENST00000409727 USP28Q96RU2 1077 aa14.36□□□□□ -0.11
CHMP3-204ENST00000409727 PHF20Q9BVI0 1012 aa14.36□□□□□ -0.11
CHMP3-204ENST00000409727 RBM27Q9P2N5 1060 aaKnown RBP14.36□□□□□ -0.11
CHMP3-204ENST00000409727 SEC63Q9UGP8 760 aaKnown RBP14.36□□□□□ -0.11
CHMP3-204ENST00000409727 NDUFB10O96000 172 aa14.35□□□□□ -0.11
CHMP3-204ENST00000409727 NLRP5P59047 1200 aa14.35□□□□□ -0.11
CHMP3-204ENST00000409727 CSPP1Q1MSJ5 1256 aa14.35□□□□□ -0.11
CHMP3-204ENST00000409727 MYSM1Q5VVJ2 828 aa14.35□□□□□ -0.11
CHMP3-204ENST00000409727 WWC2Q6AWC2 1192 aa14.35□□□□□ -0.11
CHMP3-204ENST00000409727 GPT2Q8TD30 523 aa14.35□□□□□ -0.11
CHMP3-204ENST00000409727 LEO1Q8WVC0 666 aaPredicted RBP14.35□□□□□ -0.11
CHMP3-204ENST00000409727 GLIS2Q9BZE0 524 aaPredicted RBP14.35□□□□□ -0.11
CHMP3-204ENST00000409727 SCAND2PQ9GZW5 306 aaPredicted RBP14.35□□□□□ -0.11
CHMP3-204ENST00000409727 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.35□□□□□ -0.11
CHMP3-204ENST00000409727 CFAP45Q9UL16 551 aa14.35□□□□□ -0.11
CHMP3-204ENST00000409727 ADM5C9JUS6 153 aa14.35□□□□□ -0.11
CHMP3-204ENST00000409727 ASNSP08243 561 aa14.35□□□□□ -0.11
CHMP3-204ENST00000409727 U2AF2P26368 475 aaKnown RBP eCLIP14.35□□□□□ -0.11
CHMP3-204ENST00000409727 INPP5BP32019 993 aa14.35□□□□□ -0.11
CHMP3-204ENST00000409727 KRT2P35908 639 aa14.35□□□□□ -0.11
CHMP3-204ENST00000409727 IKQ13123 557 aaPredicted RBP14.35□□□□□ -0.11
CHMP3-204ENST00000409727 SKOR2Q2VWA4 1001 aaPredicted RBP14.35□□□□□ -0.11
CHMP3-204ENST00000409727 GPATCH4Q5T3I0 446 aaKnown RBP14.35□□□□□ -0.11
CHMP3-204ENST00000409727 DCAF15Q66K64 600 aa14.35□□□□□ -0.11
CHMP3-204ENST00000409727 ADGRF4Q8IZF3 695 aa14.35□□□□□ -0.11
CHMP3-204ENST00000409727 TMEM87AQ8NBN3 555 aa14.35□□□□□ -0.11
CHMP3-204ENST00000409727 RGS22Q8NE09 1264 aa14.35□□□□□ -0.11
CHMP3-204ENST00000409727 DCAF4Q8WV16 495 aa14.35□□□□□ -0.11
CHMP3-204ENST00000409727 DCPSQ96C86 337 aaKnown RBP14.35□□□□□ -0.11
CHMP3-204ENST00000409727 MYH15Q9Y2K3 1946 aa14.34□□□□□ -0.11
CHMP3-204ENST00000409727 USP17L10C9JJH3 530 aa14.34□□□□□ -0.11
CHMP3-204ENST00000409727 EPHX2P34913 555 aa14.34□□□□□ -0.11
CHMP3-204ENST00000409727 EAPPQ56P03 285 aaPredicted RBP14.34□□□□□ -0.11
CHMP3-204ENST00000409727 KIAA1755Q5JYT7 1200 aa14.34□□□□□ -0.11
CHMP3-204ENST00000409727 TYW1BQ6NUM6 668 aa14.34□□□□□ -0.11
CHMP3-204ENST00000409727 NOSTRINQ8IVI9 506 aa14.34□□□□□ -0.11
CHMP3-204ENST00000409727 GMCL1P1Q8NEA9 526 aa14.34□□□□□ -0.11
CHMP3-204ENST00000409727 WRNIP1Q96S55 665 aa14.34□□□□□ -0.11
CHMP3-204ENST00000409727 RIOX1Q9H6W3 641 aa14.34□□□□□ -0.11
CHMP3-204ENST00000409727 CLIC4Q9Y696 253 aa14.34□□□□□ -0.11
CHMP3-204ENST00000409727 GLTPD2A6NH11 291 aa14.33□□□□□ -0.11
CHMP3-204ENST00000409727 SOCS7O14512 581 aa14.33□□□□□ -0.11
CHMP3-204ENST00000409727 ADAMTS3O15072 1205 aa14.33□□□□□ -0.11
CHMP3-204ENST00000409727 SULF1Q8IWU6 871 aa14.33□□□□□ -0.11
CHMP3-204ENST00000409727 ZKSCAN4Q969J2 545 aaPredicted RBP14.33□□□□□ -0.11
CHMP3-204ENST00000409727 FEZ1Q99689 392 aa14.33□□□□□ -0.11
CHMP3-204ENST00000409727 ZNF341Q9BYN7 854 aa14.33□□□□□ -0.11
CHMP3-204ENST00000409727 FOXP1Q9H334 677 aaPredicted RBP14.33□□□□□ -0.11
CHMP3-204ENST00000409727 JMJD4Q9H9V9 463 aa14.33□□□□□ -0.11
CHMP3-204ENST00000409727 BRMS1Q9HCU9 246 aa14.33□□□□□ -0.11
CHMP3-204ENST00000409727 TMX2Q9Y320 296 aa14.33□□□□□ -0.11
CHMP3-204ENST00000409727 POLR2AP24928 1970 aaKnown RBP14.33□□□□□ -0.12
CHMP3-204ENST00000409727 FAM205CA6NFA0 338 aa14.33□□□□□ -0.12
CHMP3-204ENST00000409727 STXBP3O00186 592 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms