RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 ADAM11O75078 769 aa6.81□□□□□ -1.32
CLK1-202ENST00000409403 CTSBP07858 339 aa6.81□□□□□ -1.32
CLK1-202ENST00000409403 HSPA5P11021 654 aaKnown RBP6.81□□□□□ -1.32
CLK1-202ENST00000409403 MCM4P33991 863 aa6.81□□□□□ -1.32
CLK1-202ENST00000409403 ZNF165P49910 485 aa6.81□□□□□ -1.32
CLK1-202ENST00000409403 RAC1P63000 192 aa6.81□□□□□ -1.32
CLK1-202ENST00000409403 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.81□□□□□ -1.32
CLK1-202ENST00000409403 MTFR1LQ9H019 292 aa6.81□□□□□ -1.32
CLK1-202ENST00000409403 CFDP1Q9UEE9 299 aaPredicted RBP6.81□□□□□ -1.32
CLK1-202ENST00000409403 KTN1Q86UP2 1357 aaKnown RBP6.81□□□□□ -1.32
CLK1-202ENST00000409403 FYCO1Q9BQS8 1478 aa6.81□□□□□ -1.32
CLK1-202ENST00000409403 A0A0A0MRY4 1105 aa6.81□□□□□ -1.32
CLK1-202ENST00000409403 A0A0U1RQG5 324 aaPredicted RBP6.81□□□□□ -1.32
CLK1-202ENST00000409403 FRAT2O75474 233 aaPredicted RBP6.81□□□□□ -1.32
CLK1-202ENST00000409403 RBL2Q08999 1139 aa6.81□□□□□ -1.32
CLK1-202ENST00000409403 FBXO11Q86XK2 927 aa6.81□□□□□ -1.32
CLK1-202ENST00000409403 SMAP1Q8IYB5 467 aaPredicted RBP6.81□□□□□ -1.32
CLK1-202ENST00000409403 FMR1NBQ8N0W7 255 aaPredicted RBP6.81□□□□□ -1.32
CLK1-202ENST00000409403 REXO1Q8N1G1 1221 aaKnown RBP6.81□□□□□ -1.32
CLK1-202ENST00000409403 CPLX3Q8WVH0 158 aa6.81□□□□□ -1.32
CLK1-202ENST00000409403 TRIM11Q96F44 468 aa6.81□□□□□ -1.32
CLK1-202ENST00000409403 BRMS1Q9HCU9 246 aa6.81□□□□□ -1.32
CLK1-202ENST00000409403 KCNK4Q9NYG8 393 aa6.81□□□□□ -1.32
CLK1-202ENST00000409403 PPT2Q9UMR5 302 aa6.81□□□□□ -1.32
CLK1-202ENST00000409403 COL14A1Q05707 1796 aaKnown RBP6.8□□□□□ -1.32
CLK1-202ENST00000409403 SPDYE3A6NKU9 549 aa6.8□□□□□ -1.32
CLK1-202ENST00000409403 PIK3R2O00459 728 aa6.8□□□□□ -1.32
CLK1-202ENST00000409403 ZNF862O60290 1169 aa6.8□□□□□ -1.32
CLK1-202ENST00000409403 TOMM70O94826 608 aa6.8□□□□□ -1.32
CLK1-202ENST00000409403 LIG1P18858 919 aa6.8□□□□□ -1.32
CLK1-202ENST00000409403 RGS19P49795 217 aa6.8□□□□□ -1.32
CLK1-202ENST00000409403 MRE11P49959 708 aa6.8□□□□□ -1.32
CLK1-202ENST00000409403 WIPI1Q5MNZ9 446 aaPredicted RBP6.8□□□□□ -1.32
CLK1-202ENST00000409403 SOGA3Q5TF21 947 aa6.8□□□□□ -1.32
CLK1-202ENST00000409403 SRRTQ9BXP5 876 aaKnown RBP6.8□□□□□ -1.32
CLK1-202ENST00000409403 MTUS2Q5JR59 1369 aa6.8□□□□□ -1.32
CLK1-202ENST00000409403 HFM1A2PYH4 1435 aa6.8□□□□□ -1.32
CLK1-202ENST00000409403 PEAK1Q9H792 1746 aa6.79□□□□□ -1.32
CLK1-202ENST00000409403 CCDC144AA2RUR9 1427 aa6.79□□□□□ -1.32
CLK1-202ENST00000409403 DLL1O00548 723 aa6.79□□□□□ -1.32
CLK1-202ENST00000409403 GNB5O14775 395 aa6.79□□□□□ -1.32
CLK1-202ENST00000409403 ARHGEF15O94989 841 aa6.79□□□□□ -1.32
CLK1-202ENST00000409403 SELPP16109 830 aa6.79□□□□□ -1.32
CLK1-202ENST00000409403 TNNT2P45379 298 aaPredicted RBP6.79□□□□□ -1.32
CLK1-202ENST00000409403 SNRPNP63162 240 aaKnown RBP6.79□□□□□ -1.32
CLK1-202ENST00000409403 KIF4BQ2VIQ3 1234 aa6.79□□□□□ -1.32
CLK1-202ENST00000409403 LINC00114Q6XXX2 140 aa6.79□□□□□ -1.32
CLK1-202ENST00000409403 GK5Q6ZS86 529 aa6.79□□□□□ -1.32
CLK1-202ENST00000409403 WDR89Q96FK6 387 aaPredicted RBP6.79□□□□□ -1.32
CLK1-202ENST00000409403 FERD3LQ96RJ6 166 aa6.79□□□□□ -1.32
CLK1-202ENST00000409403 ZNF408Q9H9D4 720 aa6.79□□□□□ -1.32
CLK1-202ENST00000409403 MKL2Q9ULH7 1088 aa6.79□□□□□ -1.32
CLK1-202ENST00000409403 SNCAIPQ9Y6H5 919 aa6.79□□□□□ -1.32
CLK1-202ENST00000409403 DLGAP3O95886 979 aa6.78□□□□□ -1.32
CLK1-202ENST00000409403 IMPDH2P12268 514 aa6.78□□□□□ -1.32
CLK1-202ENST00000409403 CDK8P49336 464 aa6.78□□□□□ -1.32
CLK1-202ENST00000409403 INPP5AQ14642 412 aa6.78□□□□□ -1.32
CLK1-202ENST00000409403 DUOXA2Q1HG44 320 aa6.78□□□□□ -1.32
CLK1-202ENST00000409403 TAF7LQ5H9L4 462 aa6.78□□□□□ -1.32
CLK1-202ENST00000409403 CCDC81Q6ZN84 652 aa6.78□□□□□ -1.32
CLK1-202ENST00000409403 CENPQQ7L2Z9 268 aaPredicted RBP6.78□□□□□ -1.32
CLK1-202ENST00000409403 HDXQ7Z353 690 aa6.78□□□□□ -1.32
CLK1-202ENST00000409403 UBASH3BQ8TF42 649 aa6.78□□□□□ -1.32
CLK1-202ENST00000409403 TRIM44Q96DX7 344 aaPredicted RBP6.78□□□□□ -1.32
CLK1-202ENST00000409403 PLPPR2Q96GM1 343 aa6.78□□□□□ -1.32
CLK1-202ENST00000409403 PLVAPQ9BX97 442 aa6.78□□□□□ -1.32
CLK1-202ENST00000409403 RCAN3Q9UKA8 241 aa6.78□□□□□ -1.32
CLK1-202ENST00000409403 PRDM4Q9UKN5 801 aa6.78□□□□□ -1.32
CLK1-202ENST00000409403 MRVI1Q9Y6F6 885 aa6.78□□□□□ -1.32
CLK1-202ENST00000409403 TUBGCP6Q96RT7 1819 aa6.78□□□□□ -1.32
CLK1-202ENST00000409403 ROCK2O75116 1388 aaKnown RBP6.78□□□□□ -1.32
CLK1-202ENST00000409403 INSRP06213 1382 aa6.78□□□□□ -1.32
CLK1-202ENST00000409403 NPHP3Q7Z494 1330 aa6.78□□□□□ -1.32
CLK1-202ENST00000409403 FSD2A1L4K1 749 aa6.77□□□□□ -1.32
CLK1-202ENST00000409403 GFRA2O00451 464 aa6.77□□□□□ -1.32
CLK1-202ENST00000409403 GRIN3BO60391 1043 aa6.77□□□□□ -1.32
CLK1-202ENST00000409403 AOC2O75106 756 aa6.77□□□□□ -1.32
CLK1-202ENST00000409403 SLFN14P0C7P3 912 aa6.77□□□□□ -1.32
CLK1-202ENST00000409403 FAM50AQ14320 339 aaKnown RBP6.77□□□□□ -1.32
CLK1-202ENST00000409403 EXOSC6Q5RKV6 272 aaKnown RBP6.77□□□□□ -1.32
CLK1-202ENST00000409403 UTP14CQ5TAP6 766 aaKnown RBP6.77□□□□□ -1.32
CLK1-202ENST00000409403 FBXW10Q5XX13 1052 aa6.77□□□□□ -1.32
CLK1-202ENST00000409403 LRFN4Q6PJG9 635 aa6.77□□□□□ -1.32
CLK1-202ENST00000409403 DPH6Q7L8W6 267 aa6.77□□□□□ -1.32
CLK1-202ENST00000409403 CKAP2LQ8IYA6 745 aa6.77□□□□□ -1.32
CLK1-202ENST00000409403 PMFBP1Q8TBY8 1022 aa6.77□□□□□ -1.32
CLK1-202ENST00000409403 ELMO3Q96BJ8 720 aa6.77□□□□□ -1.32
CLK1-202ENST00000409403 ANAPC16Q96DE5 110 aa6.77□□□□□ -1.32
CLK1-202ENST00000409403 SHDQ96IW2 340 aa6.77□□□□□ -1.32
CLK1-202ENST00000409403 WDR18Q9BV38 432 aa6.77□□□□□ -1.32
CLK1-202ENST00000409403 EHMT1Q9H9B1 1298 aa6.77□□□□□ -1.32
CLK1-202ENST00000409403 RAD18Q9NS91 495 aa6.77□□□□□ -1.32
CLK1-202ENST00000409403 ZNRF3Q9ULT6 936 aa6.77□□□□□ -1.32
CLK1-202ENST00000409403 POLR3KQ9Y2Y1 108 aaPredicted RBP6.77□□□□□ -1.32
CLK1-202ENST00000409403 PCDHB14Q9Y5E9 798 aa6.77□□□□□ -1.32
CLK1-202ENST00000409403 DUOX2Q9NRD8 1548 aa6.77□□□□□ -1.33
CLK1-202ENST00000409403 SPATA31A5Q5VU36 1347 aa6.77□□□□□ -1.33
CLK1-202ENST00000409403 SPATA31A7Q8IWB4 1347 aa6.77□□□□□ -1.33
CLK1-202ENST00000409403 SYNGAP1Q96PV0 1343 aa6.77□□□□□ -1.33
CLK1-202ENST00000409403 CCDC85CA6NKD9 419 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms