RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 LCE1CQ5T751 118 aa1.12□□□□□ -2.23
RNU6-540P-201ENST00000384622 LCE1BQ5T7P3 118 aa1.12□□□□□ -2.23
RNU6-540P-201ENST00000384622 PDE12Q6L8Q7 609 aaKnown RBP1.12□□□□□ -2.23
RNU6-540P-201ENST00000384622 ZNF746Q6NUN9 644 aaPredicted RBP1.12□□□□□ -2.23
RNU6-540P-201ENST00000384622 ZNF438Q7Z4V0 828 aa1.12□□□□□ -2.23
RNU6-540P-201ENST00000384622 C1orf210Q8IVY1 113 aa1.12□□□□□ -2.23
RNU6-540P-201ENST00000384622 ETFBKMTQ8IXQ9 262 aa1.12□□□□□ -2.23
RNU6-540P-201ENST00000384622 LARGE2Q8N3Y3 721 aa1.12□□□□□ -2.23
RNU6-540P-201ENST00000384622 PMEPA1Q969W9 287 aa1.12□□□□□ -2.23
RNU6-540P-201ENST00000384622 CLIP3Q96DZ5 547 aa1.12□□□□□ -2.23
RNU6-540P-201ENST00000384622 PCDHA11Q9Y5I1 949 aa1.12□□□□□ -2.23
RNU6-540P-201ENST00000384622 CYP7A1P22680 504 aa1.11□□□□□ -2.23
RNU6-540P-201ENST00000384622 ERVK-24P63145 666 aa1.11□□□□□ -2.23
RNU6-540P-201ENST00000384622 CBX2Q14781 532 aaPredicted RBP1.11□□□□□ -2.23
RNU6-540P-201ENST00000384622 RPTNQ6XPR3 784 aa1.11□□□□□ -2.23
RNU6-540P-201ENST00000384622 CEP128Q6ZU80 1094 aa1.11□□□□□ -2.23
RNU6-540P-201ENST00000384622 CDC37L1Q7L3B6 337 aa1.11□□□□□ -2.23
RNU6-540P-201ENST00000384622 ARMCX6Q7L4S7 300 aa1.11□□□□□ -2.23
RNU6-540P-201ENST00000384622 AK7Q96M32 723 aa1.11□□□□□ -2.23
RNU6-540P-201ENST00000384622 SLC29A3Q9BZD2 475 aa1.11□□□□□ -2.23
RNU6-540P-201ENST00000384622 DUSP15Q9H1R2 295 aaPredicted RBP1.11□□□□□ -2.23
RNU6-540P-201ENST00000384622 GPATCH2Q9NW75 528 aa1.11□□□□□ -2.23
RNU6-540P-201ENST00000384622 SPATA6Q9NWH7 488 aaPredicted RBP1.11□□□□□ -2.23
RNU6-540P-201ENST00000384622 ZNF580Q9UK33 172 aa1.11□□□□□ -2.23
RNU6-540P-201ENST00000384622 A0A096LPE4 126 aa1.1□□□□□ -2.23
RNU6-540P-201ENST00000384622 A0A1W2PPZ6 126 aa1.1□□□□□ -2.23
RNU6-540P-201ENST00000384622 APBB1O00213 710 aa1.1□□□□□ -2.23
RNU6-540P-201ENST00000384622 B4GALT3O60512 393 aa1.1□□□□□ -2.23
RNU6-540P-201ENST00000384622 LGR5O75473 907 aa1.1□□□□□ -2.23
RNU6-540P-201ENST00000384622 LRIG2O94898 1065 aa1.1□□□□□ -2.23
RNU6-540P-201ENST00000384622 B3GALT4O96024 378 aa1.1□□□□□ -2.23
RNU6-540P-201ENST00000384622 FAM26FQ5R3K3 315 aa1.1□□□□□ -2.23
RNU6-540P-201ENST00000384622 STRIP1Q5VSL9 837 aa1.1□□□□□ -2.23
RNU6-540P-201ENST00000384622 MCTP2Q6DN12 878 aa1.1□□□□□ -2.23
RNU6-540P-201ENST00000384622 Q6ZPA2 131 aa1.1□□□□□ -2.23
RNU6-540P-201ENST00000384622 UBE3DQ7Z6J8 389 aa1.1□□□□□ -2.23
RNU6-540P-201ENST00000384622 COX4I2Q96KJ9 171 aa1.1□□□□□ -2.23
RNU6-540P-201ENST00000384622 MIPEPQ99797 713 aa1.1□□□□□ -2.23
RNU6-540P-201ENST00000384622 PICK1Q9NRD5 415 aa1.1□□□□□ -2.23
RNU6-540P-201ENST00000384622 ZNF112Q9UJU3 913 aa1.1□□□□□ -2.23
RNU6-540P-201ENST00000384622 REXO2Q9Y3B8 237 aaKnown RBP1.1□□□□□ -2.23
RNU6-540P-201ENST00000384622 SMARCA5O60264 1052 aaPredicted RBP1.09□□□□□ -2.23
RNU6-540P-201ENST00000384622 RHOBTB3O94955 611 aa1.09□□□□□ -2.23
RNU6-540P-201ENST00000384622 GCP02774 474 aa1.09□□□□□ -2.23
RNU6-540P-201ENST00000384622 EDN3P14138 238 aa1.09□□□□□ -2.23
RNU6-540P-201ENST00000384622 BRD2P25440 801 aaKnown RBP1.09□□□□□ -2.23
RNU6-540P-201ENST00000384622 MAPKAPK2P49137 400 aa1.09□□□□□ -2.23
RNU6-540P-201ENST00000384622 KRTAP10-1P60331 282 aa1.09□□□□□ -2.23
RNU6-540P-201ENST00000384622 PPP2CBP62714 309 aa1.09□□□□□ -2.23
RNU6-540P-201ENST00000384622 PPP2CAP67775 309 aa1.09□□□□□ -2.23
RNU6-540P-201ENST00000384622 FHL3Q13643 280 aa1.09□□□□□ -2.23
RNU6-540P-201ENST00000384622 ZC3H12AQ5D1E8 599 aaKnown RBP1.09□□□□□ -2.23
RNU6-540P-201ENST00000384622 SLFN13Q68D06 897 aa1.09□□□□□ -2.23
RNU6-540P-201ENST00000384622 SP5Q6BEB4 398 aaPredicted RBP1.09□□□□□ -2.23
RNU6-540P-201ENST00000384622 DLK2Q6UY11 383 aa1.09□□□□□ -2.23
RNU6-540P-201ENST00000384622 ARHGEF18Q6ZSZ5 1173 aa1.09□□□□□ -2.23
RNU6-540P-201ENST00000384622 KRTAP5-5Q701N2 237 aaPredicted RBP1.09□□□□□ -2.23
RNU6-540P-201ENST00000384622 HDXQ7Z353 690 aa1.09□□□□□ -2.23
RNU6-540P-201ENST00000384622 TSPYL5Q86VY4 417 aaPredicted RBP1.09□□□□□ -2.23
RNU6-540P-201ENST00000384622 SIX5Q8N196 739 aa1.09□□□□□ -2.23
RNU6-540P-201ENST00000384622 OGFOD1Q8N543 542 aa1.09□□□□□ -2.23
RNU6-540P-201ENST00000384622 RIN3Q8TB24 985 aa1.09□□□□□ -2.23
RNU6-540P-201ENST00000384622 GPR152Q8TDT2 470 aa1.09□□□□□ -2.23
RNU6-540P-201ENST00000384622 CACTINQ8WUQ7 758 aaKnown RBP1.09□□□□□ -2.23
RNU6-540P-201ENST00000384622 LCORQ96JN0 433 aaPredicted RBP1.09□□□□□ -2.23
RNU6-540P-201ENST00000384622 PTPN18Q99952 460 aa1.09□□□□□ -2.23
RNU6-540P-201ENST00000384622 G6PC3Q9BUM1 346 aa1.09□□□□□ -2.23
RNU6-540P-201ENST00000384622 ACRP10323 421 aa1.08□□□□□ -2.24
RNU6-540P-201ENST00000384622 NCAM1P13591 858 aa1.08□□□□□ -2.24
RNU6-540P-201ENST00000384622 PROZP22891 400 aa1.08□□□□□ -2.24
RNU6-540P-201ENST00000384622 MC3RP41968 323 aa1.08□□□□□ -2.24
RNU6-540P-201ENST00000384622 KIR2DL1P43626 348 aaPredicted RBP1.08□□□□□ -2.24
RNU6-540P-201ENST00000384622 KIR2DL2P43627 348 aaPredicted RBP1.08□□□□□ -2.24
RNU6-540P-201ENST00000384622 EPHB4P54760 987 aa1.08□□□□□ -2.24
RNU6-540P-201ENST00000384622 LAPTM5Q13571 262 aa1.08□□□□□ -2.24
RNU6-540P-201ENST00000384622 PPM1JQ5JR12 505 aa1.08□□□□□ -2.24
RNU6-540P-201ENST00000384622 COX20Q5RI15 118 aa1.08□□□□□ -2.24
RNU6-540P-201ENST00000384622 LRFN4Q6PJG9 635 aa1.08□□□□□ -2.24
RNU6-540P-201ENST00000384622 RPUSD2Q8IZ73 545 aaKnown RBP1.08□□□□□ -2.24
RNU6-540P-201ENST00000384622 SMRP1Q8NCR6 262 aa1.08□□□□□ -2.24
RNU6-540P-201ENST00000384622 ZBTB8AQ96BR9 441 aa1.08□□□□□ -2.24
RNU6-540P-201ENST00000384622 ZNF594Q96JF6 807 aaPredicted RBP1.08□□□□□ -2.24
RNU6-540P-201ENST00000384622 PLCD4Q9BRC7 762 aa1.08□□□□□ -2.24
RNU6-540P-201ENST00000384622 RNF38Q9H0F5 515 aa1.08□□□□□ -2.24
RNU6-540P-201ENST00000384622 GPBP1L1Q9HC44 474 aaPredicted RBP1.08□□□□□ -2.24
RNU6-540P-201ENST00000384622 KRT82Q9NSB4 513 aa1.08□□□□□ -2.24
RNU6-540P-201ENST00000384622 FBLN5Q9UBX5 448 aa1.08□□□□□ -2.24
RNU6-540P-201ENST00000384622 ZMYM5Q9UJ78 669 aa1.08□□□□□ -2.24
RNU6-540P-201ENST00000384622 USP17L5A8MUK1 530 aa1.07□□□□□ -2.24
RNU6-540P-201ENST00000384622 TKTP29401 623 aaKnown RBP1.07□□□□□ -2.24
RNU6-540P-201ENST00000384622 SEC13P55735 322 aa1.07□□□□□ -2.24
RNU6-540P-201ENST00000384622 TEKQ02763 1124 aa1.07□□□□□ -2.24
RNU6-540P-201ENST00000384622 NR1I3Q14994 352 aa1.07□□□□□ -2.24
RNU6-540P-201ENST00000384622 FBXL22Q6P050 247 aa1.07□□□□□ -2.24
RNU6-540P-201ENST00000384622 TXNDC5Q8NBS9 432 aaKnown RBP1.07□□□□□ -2.24
RNU6-540P-201ENST00000384622 KCT2Q8NC54 265 aa1.07□□□□□ -2.24
RNU6-540P-201ENST00000384622 MTMR14Q8NCE2 650 aa1.07□□□□□ -2.24
RNU6-540P-201ENST00000384622 EDAQ92838 391 aa1.07□□□□□ -2.24
RNU6-540P-201ENST00000384622 ZBTB9Q96C00 473 aa1.07□□□□□ -2.24
RNU6-540P-201ENST00000384622 MDFICQ9P1T7 246 aa1.07□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms