RNA–Protein interactions for RNA: ENST00000377011.6

VRK3-202, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,749 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-202ENST00000377011 ICA1Q05084 483 aa14.46□□□□□ -0.09
VRK3-202ENST00000377011 LRRFIP1Q32MZ4 808 aaKnown RBP14.46□□□□□ -0.09
VRK3-202ENST00000377011 RASGRP2Q7LDG7 609 aa14.46□□□□□ -0.09
VRK3-202ENST00000377011 SMCR8Q8TEV9 937 aaPredicted RBP14.46□□□□□ -0.09
VRK3-202ENST00000377011 CHMP4CQ96CF2 233 aa14.46□□□□□ -0.09
VRK3-202ENST00000377011 ZSCAN31Q96LW9 406 aaPredicted RBP14.46□□□□□ -0.09
VRK3-202ENST00000377011 UPF3BQ9BZI7 483 aaKnown RBP14.46□□□□□ -0.09
VRK3-202ENST00000377011 RBSNQ9H1K0 784 aa14.46□□□□□ -0.09
VRK3-202ENST00000377011 RBPJLQ9UBG7 517 aa14.46□□□□□ -0.09
VRK3-202ENST00000377011 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.46□□□□□ -0.09
VRK3-202ENST00000377011 ATP6V1DQ9Y5K8 247 aa14.46□□□□□ -0.09
VRK3-202ENST00000377011 PARP14Q460N5 1801 aa14.46□□□□□ -0.09
VRK3-202ENST00000377011 PLXNB2O15031 1838 aa14.46□□□□□ -0.09
VRK3-202ENST00000377011 OSBPP22059 807 aa14.46□□□□□ -0.1
VRK3-202ENST00000377011 HERVK_113P62684 666 aa14.46□□□□□ -0.1
VRK3-202ENST00000377011 ATP2B2Q01814 1243 aa14.46□□□□□ -0.1
VRK3-202ENST00000377011 FBXO46Q6PJ61 603 aaPredicted RBP14.46□□□□□ -0.1
VRK3-202ENST00000377011 RPAP3Q9H6T3 665 aaPredicted RBP14.46□□□□□ -0.1
VRK3-202ENST00000377011 SH2B1Q9NRF2 756 aaPredicted RBP14.46□□□□□ -0.1
VRK3-202ENST00000377011 MYH4Q9Y623 1939 aa14.45□□□□□ -0.1
VRK3-202ENST00000377011 SOX10P56693 466 aa14.45□□□□□ -0.1
VRK3-202ENST00000377011 CATSPERGQ6ZRH7 1159 aa14.45□□□□□ -0.1
VRK3-202ENST00000377011 TBC1D10CQ8IV04 446 aa14.45□□□□□ -0.1
VRK3-202ENST00000377011 AMOTL1Q8IY63 956 aa14.45□□□□□ -0.1
VRK3-202ENST00000377011 NUP88Q99567 741 aaPredicted RBP14.45□□□□□ -0.1
VRK3-202ENST00000377011 MKNK2Q9HBH9 465 aa14.45□□□□□ -0.1
VRK3-202ENST00000377011 TMX2Q9Y320 296 aa14.45□□□□□ -0.1
VRK3-202ENST00000377011 KIAA0100Q14667 2235 aaKnown RBP14.45□□□□□ -0.1
VRK3-202ENST00000377011 LETM1O95202 739 aaPredicted RBP14.44□□□□□ -0.1
VRK3-202ENST00000377011 MYCP01106 439 aaPredicted RBP14.44□□□□□ -0.1
VRK3-202ENST00000377011 PRKCZQ05513 592 aa14.44□□□□□ -0.1
VRK3-202ENST00000377011 ALX1Q15699 326 aa14.44□□□□□ -0.1
VRK3-202ENST00000377011 CSPP1Q1MSJ5 1256 aa14.44□□□□□ -0.1
VRK3-202ENST00000377011 GLIPR1L2Q4G1C9 344 aa14.44□□□□□ -0.1
VRK3-202ENST00000377011 FAM184AQ8NB25 1140 aa14.44□□□□□ -0.1
VRK3-202ENST00000377011 SH3TC2Q8TF17 1288 aa14.44□□□□□ -0.1
VRK3-202ENST00000377011 CEP95Q96GE4 821 aa14.44□□□□□ -0.1
VRK3-202ENST00000377011 CCDC17Q96LX7 622 aa14.44□□□□□ -0.1
VRK3-202ENST00000377011 NACAP1Q9BZK3 213 aa14.44□□□□□ -0.1
VRK3-202ENST00000377011 IL17RBQ9NRM6 502 aa14.44□□□□□ -0.1
VRK3-202ENST00000377011 BTBD7Q9P203 1132 aa14.44□□□□□ -0.1
VRK3-202ENST00000377011 FMNL1O95466 1100 aaPredicted RBP14.44□□□□□ -0.1
VRK3-202ENST00000377011 ZSCAN22P10073 491 aaPredicted RBP14.44□□□□□ -0.1
VRK3-202ENST00000377011 MSNP26038 577 aaKnown RBP14.44□□□□□ -0.1
VRK3-202ENST00000377011 IRX3P78415 501 aaPredicted RBP14.44□□□□□ -0.1
VRK3-202ENST00000377011 TFAP4Q01664 338 aa14.44□□□□□ -0.1
VRK3-202ENST00000377011 PAGR1Q9BTK6 254 aa14.44□□□□□ -0.1
VRK3-202ENST00000377011 PORCNQ9H237 461 aa14.44□□□□□ -0.1
VRK3-202ENST00000377011 FBXO28Q9NVF7 368 aa14.44□□□□□ -0.1
VRK3-202ENST00000377011 RBM27Q9P2N5 1060 aaKnown RBP14.44□□□□□ -0.1
VRK3-202ENST00000377011 NOL7Q9UMY1 257 aaKnown RBP14.44□□□□□ -0.1
VRK3-202ENST00000377011 TAF6LQ9Y6J9 622 aa14.44□□□□□ -0.1
VRK3-202ENST00000377011 SYCE3A1L190 88 aa14.43□□□□□ -0.1
VRK3-202ENST00000377011 SPDYE16A6NNV3 312 aaPredicted RBP14.43□□□□□ -0.1
VRK3-202ENST00000377011 AK2P54819 239 aa14.43□□□□□ -0.1
VRK3-202ENST00000377011 PTH1RQ03431 593 aa14.43□□□□□ -0.1
VRK3-202ENST00000377011 FAM110CQ1W6H9 321 aa14.43□□□□□ -0.1
VRK3-202ENST00000377011 LRRC47Q8N1G4 583 aaKnown RBP14.43□□□□□ -0.1
VRK3-202ENST00000377011 TSPY26PQ9H489 355 aa14.43□□□□□ -0.1
VRK3-202ENST00000377011 VCPKMTQ9H867 229 aa14.43□□□□□ -0.1
VRK3-202ENST00000377011 ZSWIM6Q9HCJ5 1215 aa14.43□□□□□ -0.1
VRK3-202ENST00000377011 ANAPC4Q9UJX5 808 aa14.43□□□□□ -0.1
VRK3-202ENST00000377011 COL11A1P12107 1806 aaPredicted RBP14.42□□□□□ -0.1
VRK3-202ENST00000377011 USP17L15C9J2P7 530 aa14.42□□□□□ -0.1
VRK3-202ENST00000377011 USP17L13C9JLJ4 530 aa14.42□□□□□ -0.1
VRK3-202ENST00000377011 USP17L11C9JVI0 530 aa14.42□□□□□ -0.1
VRK3-202ENST00000377011 USP17L18D6R9N7 530 aa14.42□□□□□ -0.1
VRK3-202ENST00000377011 USP17L22D6RA61 530 aa14.42□□□□□ -0.1
VRK3-202ENST00000377011 USP17L17D6RBQ6 530 aa14.42□□□□□ -0.1
VRK3-202ENST00000377011 USP17L19D6RCP7 530 aa14.42□□□□□ -0.1
VRK3-202ENST00000377011 USP17L20D6RJB6 530 aa14.42□□□□□ -0.1
VRK3-202ENST00000377011 USP17L24Q0WX57 530 aa14.42□□□□□ -0.1
VRK3-202ENST00000377011 UVSSAQ2YD98 709 aa14.42□□□□□ -0.1
VRK3-202ENST00000377011 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.42□□□□□ -0.1
VRK3-202ENST00000377011 KANSL2Q9H9L4 492 aa14.42□□□□□ -0.1
VRK3-202ENST00000377011 MORF4L1Q9UBU8 362 aa14.42□□□□□ -0.1
VRK3-202ENST00000377011 CLIP2Q9UDT6 1046 aa14.42□□□□□ -0.1
VRK3-202ENST00000377011 SRRDQ9UH36 339 aa14.42□□□□□ -0.1
VRK3-202ENST00000377011 PNMA3Q9UL41 463 aa14.42□□□□□ -0.1
VRK3-202ENST00000377011 LAMA4Q16363 1823 aa14.42□□□□□ -0.1
VRK3-202ENST00000377011 NEDD4P46934 1319 aa14.42□□□□□ -0.1
VRK3-202ENST00000377011 RAD21O60216 631 aa14.41□□□□□ -0.1
VRK3-202ENST00000377011 ZNF500O60304 480 aaPredicted RBP14.41□□□□□ -0.1
VRK3-202ENST00000377011 OFD1O75665 1012 aa14.41□□□□□ -0.1
VRK3-202ENST00000377011 FGRP09769 529 aa14.41□□□□□ -0.1
VRK3-202ENST00000377011 USP14P54578 494 aa14.41□□□□□ -0.1
VRK3-202ENST00000377011 PKN2Q16513 984 aaKnown RBP14.41□□□□□ -0.1
VRK3-202ENST00000377011 SAMD1Q6SPF0 538 aaPredicted RBP14.41□□□□□ -0.1
VRK3-202ENST00000377011 RUFY3Q7L099 469 aa14.41□□□□□ -0.1
VRK3-202ENST00000377011 RASEFQ8IZ41 740 aa14.41□□□□□ -0.1
VRK3-202ENST00000377011 ZNF444Q8N0Y2 327 aaPredicted RBP14.41□□□□□ -0.1
VRK3-202ENST00000377011 NEDD1Q8NHV4 660 aa14.41□□□□□ -0.1
VRK3-202ENST00000377011 ALDH8A1Q9H2A2 487 aaPredicted RBP14.41□□□□□ -0.1
VRK3-202ENST00000377011 MTMR4Q9NYA4 1195 aa14.41□□□□□ -0.1
VRK3-202ENST00000377011 CCDC39Q9UFE4 941 aa14.41□□□□□ -0.1
VRK3-202ENST00000377011 SMC3Q9UQE7 1217 aa14.41□□□□□ -0.1
VRK3-202ENST00000377011 A0A0G2JMZ2 1700 aa14.41□□□□□ -0.1
VRK3-202ENST00000377011 MYPNQ86TC9 1320 aa14.41□□□□□ -0.1
VRK3-202ENST00000377011 STX6O43752 255 aa14.41□□□□□ -0.1
VRK3-202ENST00000377011 ZKSCAN1P17029 563 aaPredicted RBP14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms