RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 TRPM4Q8TD43 1214 aa4.43□□□□□ -1.7
MCF2-202ENST00000370573 CCDC136Q96JN2 1154 aa4.43□□□□□ -1.7
MCF2-202ENST00000370573 MYD88Q99836 296 aa4.43□□□□□ -1.7
MCF2-202ENST00000370573 LPIN3Q9BQK8 851 aa4.43□□□□□ -1.7
MCF2-202ENST00000370573 SRCIN1Q9C0H9 1055 aa4.43□□□□□ -1.7
MCF2-202ENST00000370573 SMG9Q9H0W8 520 aaKnown RBP4.43□□□□□ -1.7
MCF2-202ENST00000370573 TLR7Q9NYK1 1049 aaKnown RBP4.43□□□□□ -1.7
MCF2-202ENST00000370573 ATP10DQ9P241 1426 aa4.43□□□□□ -1.7
MCF2-202ENST00000370573 PXDNLA1KZ92 1463 aa4.43□□□□□ -1.7
MCF2-202ENST00000370573 RREB1Q92766 1687 aa4.42□□□□□ -1.7
MCF2-202ENST00000370573 GPR182O15218 404 aa4.42□□□□□ -1.7
MCF2-202ENST00000370573 ALDH1L1O75891 902 aa4.42□□□□□ -1.7
MCF2-202ENST00000370573 APBA3O96018 575 aa4.42□□□□□ -1.7
MCF2-202ENST00000370573 EGFRP00533 1210 aa4.42□□□□□ -1.7
MCF2-202ENST00000370573 FURINP09958 794 aa4.42□□□□□ -1.7
MCF2-202ENST00000370573 SPATA31C1P0DKV0 1188 aa4.42□□□□□ -1.7
MCF2-202ENST00000370573 GTF2F1P35269 517 aaKnown RBP eCLIP4.42□□□□□ -1.7
MCF2-202ENST00000370573 EHHADHQ08426 723 aa4.42□□□□□ -1.7
MCF2-202ENST00000370573 AAMPQ13685 434 aa4.42□□□□□ -1.7
MCF2-202ENST00000370573 TXNRD1Q16881 649 aa4.42□□□□□ -1.7
MCF2-202ENST00000370573 TMC4Q7Z404 712 aa4.42□□□□□ -1.7
MCF2-202ENST00000370573 ANKRD13AQ8IZ07 590 aa4.42□□□□□ -1.7
MCF2-202ENST00000370573 LINS1Q8NG48 757 aa4.42□□□□□ -1.7
MCF2-202ENST00000370573 CAPN10Q9HC96 672 aa4.42□□□□□ -1.7
MCF2-202ENST00000370573 CNTNAP4Q9C0A0 1308 aa4.42□□□□□ -1.7
MCF2-202ENST00000370573 TAF1LQ8IZX4 1826 aa4.42□□□□□ -1.7
MCF2-202ENST00000370573 N4BP2Q86UW6 1770 aaPredicted RBP4.42□□□□□ -1.7
MCF2-202ENST00000370573 MAP3K15Q6ZN16 1313 aa4.42□□□□□ -1.7
MCF2-202ENST00000370573 KDM2BQ8NHM5 1336 aa4.42□□□□□ -1.7
MCF2-202ENST00000370573 A6NHS1 94 aa4.42□□□□□ -1.7
MCF2-202ENST00000370573 PLSCR1O15162 318 aa4.42□□□□□ -1.7
MCF2-202ENST00000370573 FZD6O60353 706 aa4.42□□□□□ -1.7
MCF2-202ENST00000370573 RPS6KA4O75676 772 aa4.42□□□□□ -1.7
MCF2-202ENST00000370573 CAMTA2O94983 1202 aa4.42□□□□□ -1.7
MCF2-202ENST00000370573 PSAPP07602 524 aa4.42□□□□□ -1.7
MCF2-202ENST00000370573 NBPF7P0C2Y1 421 aaPredicted RBP4.42□□□□□ -1.7
MCF2-202ENST00000370573 GPLD1P80108 840 aa4.42□□□□□ -1.7
MCF2-202ENST00000370573 DNM1Q05193 864 aaKnown RBP4.42□□□□□ -1.7
MCF2-202ENST00000370573 TCIRG1Q13488 830 aa4.42□□□□□ -1.7
MCF2-202ENST00000370573 SHISA2Q6UWI4 295 aa4.42□□□□□ -1.7
MCF2-202ENST00000370573 JARID2Q92833 1246 aaPredicted RBP4.42□□□□□ -1.7
MCF2-202ENST00000370573 ISCA1Q9BUE6 129 aa4.42□□□□□ -1.7
MCF2-202ENST00000370573 PRDM6Q9NQX0 595 aa4.42□□□□□ -1.7
MCF2-202ENST00000370573 ARFGEF2Q9Y6D5 1785 aa4.41□□□□□ -1.7
MCF2-202ENST00000370573 NUP188Q5SRE5 1749 aa4.41□□□□□ -1.7
MCF2-202ENST00000370573 UTYO14607 1347 aa4.41□□□□□ -1.7
MCF2-202ENST00000370573 SPDYE3A6NKU9 549 aa4.41□□□□□ -1.7
MCF2-202ENST00000370573 DAB2P98082 770 aa4.41□□□□□ -1.7
MCF2-202ENST00000370573 GCKRQ14397 625 aa4.41□□□□□ -1.7
MCF2-202ENST00000370573 SUZ12Q15022 739 aaKnown RBP4.41□□□□□ -1.7
MCF2-202ENST00000370573 GDF6Q6KF10 455 aaPredicted RBP4.41□□□□□ -1.7
MCF2-202ENST00000370573 KIF6Q6ZMV9 814 aa4.41□□□□□ -1.7
MCF2-202ENST00000370573 ALYREFQ86V81 257 aaKnown RBP4.41□□□□□ -1.7
MCF2-202ENST00000370573 KAZALD1Q96I82 304 aa4.41□□□□□ -1.7
MCF2-202ENST00000370573 TGIF2Q9GZN2 237 aa4.41□□□□□ -1.7
MCF2-202ENST00000370573 LRRFIP2Q9Y608 721 aaKnown RBP4.41□□□□□ -1.7
MCF2-202ENST00000370573 A0A0A0MRY4 1105 aa4.41□□□□□ -1.7
MCF2-202ENST00000370573 ERVV-1B6SEH8 477 aa4.41□□□□□ -1.7
MCF2-202ENST00000370573 GRM8O00222 908 aa4.41□□□□□ -1.7
MCF2-202ENST00000370573 SORBS3O60504 671 aa4.41□□□□□ -1.7
MCF2-202ENST00000370573 PRPF40AO75400 957 aaKnown RBP4.41□□□□□ -1.7
MCF2-202ENST00000370573 FAM13AO94988 1023 aa4.41□□□□□ -1.7
MCF2-202ENST00000370573 GNAI2P04899 355 aa4.41□□□□□ -1.7
MCF2-202ENST00000370573 GNAI3P08754 354 aa4.41□□□□□ -1.7
MCF2-202ENST00000370573 CASP7P55210 303 aa4.41□□□□□ -1.7
MCF2-202ENST00000370573 NEXNQ0ZGT2 675 aa4.41□□□□□ -1.7
MCF2-202ENST00000370573 DOC2BQ14184 412 aa4.41□□□□□ -1.7
MCF2-202ENST00000370573 PCSK7Q16549 785 aa4.41□□□□□ -1.7
MCF2-202ENST00000370573 CEP85Q6P2H3 762 aa4.41□□□□□ -1.7
MCF2-202ENST00000370573 SKAP1Q86WV1 359 aa4.41□□□□□ -1.7
MCF2-202ENST00000370573 ZNF34Q8IZ26 560 aa4.41□□□□□ -1.7
MCF2-202ENST00000370573 NLGN1Q8N2Q7 840 aa4.41□□□□□ -1.7
MCF2-202ENST00000370573 ANKRD44Q8N8A2 993 aa4.41□□□□□ -1.7
MCF2-202ENST00000370573 EDEM1Q92611 657 aa4.41□□□□□ -1.7
MCF2-202ENST00000370573 RNF34Q969K3 372 aa4.41□□□□□ -1.7
MCF2-202ENST00000370573 CAMKK2Q96RR4 588 aa4.41□□□□□ -1.7
MCF2-202ENST00000370573 CHMP4BQ9H444 224 aaKnown RBP4.41□□□□□ -1.7
MCF2-202ENST00000370573 TNS1Q9HBL0 1735 aaKnown RBP4.41□□□□□ -1.7
MCF2-202ENST00000370573 COL15A1P39059 1388 aa4.4□□□□□ -1.7
MCF2-202ENST00000370573 IBTKQ9P2D0 1353 aaPredicted RBP4.4□□□□□ -1.7
MCF2-202ENST00000370573 C4BP0C0L5 1744 aa4.4□□□□□ -1.7
MCF2-202ENST00000370573 CYP2E1P05181 493 aaPredicted RBP4.4□□□□□ -1.7
MCF2-202ENST00000370573 UBTFL1P0CB47 393 aaPredicted RBP4.4□□□□□ -1.7
MCF2-202ENST00000370573 NCLP19338 710 aaKnown RBP4.4□□□□□ -1.7
MCF2-202ENST00000370573 BAG6P46379 1132 aa4.4□□□□□ -1.7
MCF2-202ENST00000370573 EIF1AXP47813 144 aaKnown RBP4.4□□□□□ -1.7
MCF2-202ENST00000370573 ATP8B2P98198 1209 aa4.4□□□□□ -1.7
MCF2-202ENST00000370573 HDAC1Q13547 482 aaPredicted RBP4.4□□□□□ -1.7
MCF2-202ENST00000370573 GRIK5Q16478 980 aa4.4□□□□□ -1.7
MCF2-202ENST00000370573 ZNF827Q17R98 1081 aa4.4□□□□□ -1.7
MCF2-202ENST00000370573 C8orf34Q49A92 452 aa4.4□□□□□ -1.7
MCF2-202ENST00000370573 EPHA10Q5JZY3 1008 aa4.4□□□□□ -1.7
MCF2-202ENST00000370573 COL13A1Q5TAT6 717 aaPredicted RBP4.4□□□□□ -1.7
MCF2-202ENST00000370573 NOP9Q86U38 636 aaKnown RBP4.4□□□□□ -1.7
MCF2-202ENST00000370573 SYNE4Q8N205 404 aa4.4□□□□□ -1.7
MCF2-202ENST00000370573 SLC43A3Q8NBI5 491 aa4.4□□□□□ -1.7
MCF2-202ENST00000370573 PLD4Q96BZ4 506 aa4.4□□□□□ -1.7
MCF2-202ENST00000370573 GPATCH3Q96I76 525 aa4.4□□□□□ -1.7
MCF2-202ENST00000370573 SUCLG2Q96I99 432 aa4.4□□□□□ -1.7
MCF2-202ENST00000370573 BCL11AQ9H165 835 aa4.4□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms