RNA–Protein interactions for RNA: ENST00000361866.7

COL6A1-201, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL6A1, Length 4,238 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-201ENST00000361866 SF3B2Q13435 895 aaKnown RBP15.49■□□□□ 0.07
COL6A1-201ENST00000361866 USP49Q70CQ1 688 aa15.49■□□□□ 0.07
COL6A1-201ENST00000361866 ENGASEQ8NFI3 743 aa15.49■□□□□ 0.07
COL6A1-201ENST00000361866 PAIP2Q9BPZ3 127 aaKnown RBP15.49■□□□□ 0.07
COL6A1-201ENST00000361866 GDAQ9Y2T3 454 aa15.49■□□□□ 0.07
COL6A1-201ENST00000361866 PCCAP05165 728 aaPredicted RBP15.49■□□□□ 0.07
COL6A1-201ENST00000361866 TECP42680 631 aa15.49■□□□□ 0.07
COL6A1-201ENST00000361866 SLC7A5Q01650 507 aa15.49■□□□□ 0.07
COL6A1-201ENST00000361866 IFI16Q16666 785 aaKnown RBP15.49■□□□□ 0.07
COL6A1-201ENST00000361866 MB21D2Q8IYB1 491 aaPredicted RBP15.49■□□□□ 0.07
COL6A1-201ENST00000361866 TUBGCP2Q9BSJ2 902 aa15.49■□□□□ 0.07
COL6A1-201ENST00000361866 CAPS2Q9BXY5 557 aa15.49■□□□□ 0.07
COL6A1-201ENST00000361866 LRWD1Q9UFC0 647 aa15.49■□□□□ 0.07
COL6A1-201ENST00000361866 E7EVH7 732 aa15.48■□□□□ 0.07
COL6A1-201ENST00000361866 H7C1D1 291 aa15.48■□□□□ 0.07
COL6A1-201ENST00000361866 H7C1W4 665 aa15.48■□□□□ 0.07
COL6A1-201ENST00000361866 CYP27B1O15528 508 aa15.48■□□□□ 0.07
COL6A1-201ENST00000361866 TBCAO75347 108 aaKnown RBP15.48■□□□□ 0.07
COL6A1-201ENST00000361866 PTPREP23469 700 aa15.48■□□□□ 0.07
COL6A1-201ENST00000361866 DNM2P50570 870 aa15.48■□□□□ 0.07
COL6A1-201ENST00000361866 KRT31Q15323 416 aa15.48■□□□□ 0.07
COL6A1-201ENST00000361866 IFT20Q8IY31 132 aa15.48■□□□□ 0.07
COL6A1-201ENST00000361866 KAZALD1Q96I82 304 aa15.48■□□□□ 0.07
COL6A1-201ENST00000361866 NUP58Q9BVL2 599 aa15.48■□□□□ 0.07
COL6A1-201ENST00000361866 SEC31BQ9NQW1 1179 aa15.48■□□□□ 0.07
COL6A1-201ENST00000361866 COL3A1P02461 1466 aaPredicted RBP15.48■□□□□ 0.07
COL6A1-201ENST00000361866 GTPBP6O43824 516 aaPredicted RBP15.48■□□□□ 0.07
COL6A1-201ENST00000361866 C2orf54Q08AI8 447 aa15.48■□□□□ 0.07
COL6A1-201ENST00000361866 USPL1Q5W0Q7 1092 aa15.48■□□□□ 0.07
COL6A1-201ENST00000361866 CNNM4Q6P4Q7 775 aa15.48■□□□□ 0.07
COL6A1-201ENST00000361866 PAGE5Q96GU1 130 aa15.48■□□□□ 0.07
COL6A1-201ENST00000361866 C8orf37Q96NL8 207 aa15.48■□□□□ 0.07
COL6A1-201ENST00000361866 SUGCTQ9HAC7 445 aa15.48■□□□□ 0.07
COL6A1-201ENST00000361866 GPCPD1Q9NPB8 672 aa15.48■□□□□ 0.07
COL6A1-201ENST00000361866 DENND2AQ9ULE3 1009 aa15.48■□□□□ 0.07
COL6A1-201ENST00000361866 GCOM1H8Y6P7 765 aaPredicted RBP15.48■□□□□ 0.07
COL6A1-201ENST00000361866 MFAP3LO75121 409 aa15.48■□□□□ 0.07
COL6A1-201ENST00000361866 MYZAPP0CAP1 466 aa15.48■□□□□ 0.07
COL6A1-201ENST00000361866 GUCY1A2P33402 732 aa15.48■□□□□ 0.07
COL6A1-201ENST00000361866 FMR1Q06787 632 aaKnown RBP eCLIP15.48■□□□□ 0.07
COL6A1-201ENST00000361866 HDAC6Q9UBN7 1215 aa15.48■□□□□ 0.07
COL6A1-201ENST00000361866 SRPRBQ9Y5M8 271 aaKnown RBP15.48■□□□□ 0.07
COL6A1-201ENST00000361866 ARHGAP31Q2M1Z3 1444 aa15.48■□□□□ 0.07
COL6A1-201ENST00000361866 HECW2Q9P2P5 1572 aa15.48■□□□□ 0.07
COL6A1-201ENST00000361866 NDUFA10O95299 355 aa15.48■□□□□ 0.07
COL6A1-201ENST00000361866 PLS1Q14651 629 aa15.48■□□□□ 0.07
COL6A1-201ENST00000361866 SLC9C1Q4G0N8 1177 aa15.48■□□□□ 0.07
COL6A1-201ENST00000361866 B4GALNT4Q76KP1 1039 aa15.48■□□□□ 0.07
COL6A1-201ENST00000361866 ZNF219Q9P2Y4 722 aaPredicted RBP15.48■□□□□ 0.07
COL6A1-201ENST00000361866 PPP1R1BQ9UD71 204 aaPredicted RBP15.48■□□□□ 0.07
COL6A1-201ENST00000361866 ADGRG1Q9Y653 693 aa15.48■□□□□ 0.07
COL6A1-201ENST00000361866 CIAO1O76071 339 aa15.47■□□□□ 0.07
COL6A1-201ENST00000361866 HERC4Q5GLZ8 1057 aaPredicted RBP15.47■□□□□ 0.07
COL6A1-201ENST00000361866 MSL1Q68DK7 614 aa15.47■□□□□ 0.07
COL6A1-201ENST00000361866 SNX29Q8TEQ0 813 aa15.47■□□□□ 0.07
COL6A1-201ENST00000361866 CABS1Q96KC9 395 aa15.47■□□□□ 0.07
COL6A1-201ENST00000361866 SLAIN2Q9P270 581 aa15.47■□□□□ 0.07
COL6A1-201ENST00000361866 UBE2Q2LH0YL09 131 aa15.47■□□□□ 0.07
COL6A1-201ENST00000361866 SCG2P13521 617 aa15.47■□□□□ 0.07
COL6A1-201ENST00000361866 CFAP221Q4G0U5 840 aa15.47■□□□□ 0.07
COL6A1-201ENST00000361866 CEP85LQ5SZL2 805 aa15.47■□□□□ 0.07
COL6A1-201ENST00000361866 BLIDQ8IZY5 108 aa15.47■□□□□ 0.07
COL6A1-201ENST00000361866 LRRC27Q9C0I9 530 aa15.47■□□□□ 0.07
COL6A1-201ENST00000361866 ALDH8A1Q9H2A2 487 aaPredicted RBP15.47■□□□□ 0.07
COL6A1-201ENST00000361866 NEDD4P46934 1319 aa15.47■□□□□ 0.07
COL6A1-201ENST00000361866 CAMSAP1Q5T5Y3 1602 aa15.47■□□□□ 0.07
COL6A1-201ENST00000361866 SOS2Q07890 1332 aaPredicted RBP15.47■□□□□ 0.07
COL6A1-201ENST00000361866 DYNLL1P63167 89 aaKnown RBP15.47■□□□□ 0.07
COL6A1-201ENST00000361866 SENP2Q9HC62 589 aa15.47■□□□□ 0.07
COL6A1-201ENST00000361866 LMTK3Q96Q04 1460 aa15.46■□□□□ 0.07
COL6A1-201ENST00000361866 TRIM49BA6NDI0 452 aa15.46■□□□□ 0.07
COL6A1-201ENST00000361866 LDHBP07195 334 aaKnown RBP15.46■□□□□ 0.07
COL6A1-201ENST00000361866 TRIM58Q8NG06 486 aa15.46■□□□□ 0.07
COL6A1-201ENST00000361866 BTG4Q9NY30 223 aa15.46■□□□□ 0.07
COL6A1-201ENST00000361866 CYP2C19P33261 490 aa15.46■□□□□ 0.07
COL6A1-201ENST00000361866 GUCY2DQ02846 1103 aa15.46■□□□□ 0.07
COL6A1-201ENST00000361866 KLHL30Q0D2K2 578 aa15.46■□□□□ 0.07
COL6A1-201ENST00000361866 SETDB2Q96T68 719 aa15.46■□□□□ 0.07
COL6A1-201ENST00000361866 MRPL44Q9H9J2 332 aaKnown RBP15.46■□□□□ 0.07
COL6A1-201ENST00000361866 NONOQ15233 471 aaKnown RBP eCLIP15.46■□□□□ 0.06
COL6A1-201ENST00000361866 PANX2Q96RD6 677 aa15.46■□□□□ 0.06
COL6A1-201ENST00000361866 STRBPQ96SI9 672 aaKnown RBP15.46■□□□□ 0.06
COL6A1-201ENST00000361866 BPIFA3Q9BQP9 254 aa15.46■□□□□ 0.06
COL6A1-201ENST00000361866 TAOK3Q9H2K8 898 aa15.46■□□□□ 0.06
COL6A1-201ENST00000361866 BIN2Q9UBW5 565 aaPredicted RBP15.46■□□□□ 0.06
COL6A1-201ENST00000361866 PLEKHA8P1O95397 391 aa15.45■□□□□ 0.06
COL6A1-201ENST00000361866 VIMP08670 466 aaKnown RBP15.45■□□□□ 0.06
COL6A1-201ENST00000361866 RASSF7Q02833 373 aa15.45■□□□□ 0.06
COL6A1-201ENST00000361866 RPGRQ92834 1020 aaKnown RBP15.45■□□□□ 0.06
COL6A1-201ENST00000361866 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.45■□□□□ 0.06
COL6A1-201ENST00000361866 MRFAP1Q9Y605 127 aa15.45■□□□□ 0.06
COL6A1-201ENST00000361866 UBN2Q6ZU65 1347 aa15.45■□□□□ 0.06
COL6A1-201ENST00000361866 EZRP15311 586 aaKnown RBP15.45■□□□□ 0.06
COL6A1-201ENST00000361866 VSNL1P62760 191 aa15.45■□□□□ 0.06
COL6A1-201ENST00000361866 PPP2R5BQ15173 497 aa15.45■□□□□ 0.06
COL6A1-201ENST00000361866 ADAT2Q7Z6V5 191 aaKnown RBP15.45■□□□□ 0.06
COL6A1-201ENST00000361866 MAPKAPK5Q8IW41 473 aa15.45■□□□□ 0.06
COL6A1-201ENST00000361866 CCDC155Q8N6L0 562 aa15.45■□□□□ 0.06
COL6A1-201ENST00000361866 POLD4Q9HCU8 107 aa15.45■□□□□ 0.06
COL6A1-201ENST00000361866 ZBTB1Q9Y2K1 713 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms