RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 PHKBQ93100 1093 aa4.72□□□□□ -1.65
LIG4-201ENST00000356922 AIFM3Q96NN9 605 aa4.72□□□□□ -1.65
LIG4-201ENST00000356922 KIAA1683Q9H0B3 1180 aa4.72□□□□□ -1.65
LIG4-201ENST00000356922 GPCPD1Q9NPB8 672 aa4.72□□□□□ -1.65
LIG4-201ENST00000356922 CREBZFQ9NS37 354 aa4.72□□□□□ -1.65
LIG4-201ENST00000356922 RLFQ13129 1914 aa4.72□□□□□ -1.65
LIG4-201ENST00000356922 A0A0G2JLL6 359 aaPredicted RBP4.72□□□□□ -1.65
LIG4-201ENST00000356922 RASSF10A6NK89 507 aa4.72□□□□□ -1.65
LIG4-201ENST00000356922 BTBD19C9JJ37 291 aa4.72□□□□□ -1.65
LIG4-201ENST00000356922 JAK2O60674 1132 aa4.72□□□□□ -1.65
LIG4-201ENST00000356922 PPP1R11O60927 126 aaPredicted RBP4.72□□□□□ -1.65
LIG4-201ENST00000356922 TOP1P11387 765 aaKnown RBP4.72□□□□□ -1.65
LIG4-201ENST00000356922 FDPSP14324 419 aaKnown RBP4.72□□□□□ -1.65
LIG4-201ENST00000356922 PSMA5P28066 241 aa4.72□□□□□ -1.65
LIG4-201ENST00000356922 FKBP1BP68106 108 aa4.72□□□□□ -1.65
LIG4-201ENST00000356922 KIF23Q02241 960 aaPredicted RBP4.72□□□□□ -1.65
LIG4-201ENST00000356922 DEFB115Q30KQ5 88 aa4.72□□□□□ -1.65
LIG4-201ENST00000356922 Q3C1V9 767 aa4.72□□□□□ -1.65
LIG4-201ENST00000356922 SLFN13Q68D06 897 aa4.72□□□□□ -1.65
LIG4-201ENST00000356922 PRRT2Q7Z6L0 340 aaPredicted RBP4.72□□□□□ -1.65
LIG4-201ENST00000356922 FANCBQ8NB91 859 aa4.72□□□□□ -1.65
LIG4-201ENST00000356922 TMX3Q96JJ7 454 aa4.72□□□□□ -1.65
LIG4-201ENST00000356922 P2RX7Q99572 595 aaKnown RBP4.72□□□□□ -1.65
LIG4-201ENST00000356922 VCPKMTQ9H867 229 aa4.72□□□□□ -1.65
LIG4-201ENST00000356922 TXNRD2Q9NNW7 524 aa4.72□□□□□ -1.65
LIG4-201ENST00000356922 NAP1L2Q9ULW6 460 aaPredicted RBP4.72□□□□□ -1.65
LIG4-201ENST00000356922 PALM3A6NDB9 673 aaPredicted RBP4.72□□□□□ -1.65
LIG4-201ENST00000356922 SLC10A3P09131 477 aa4.72□□□□□ -1.65
LIG4-201ENST00000356922 TMEM87BQ96K49 555 aa4.72□□□□□ -1.65
LIG4-201ENST00000356922 CAPNS2Q96L46 248 aa4.72□□□□□ -1.65
LIG4-201ENST00000356922 ALDH8A1Q9H2A2 487 aaPredicted RBP4.72□□□□□ -1.65
LIG4-201ENST00000356922 UPF2Q9HAU5 1272 aaKnown RBP4.72□□□□□ -1.65
LIG4-201ENST00000356922 ZNF287Q9HBT7 754 aa4.72□□□□□ -1.65
LIG4-201ENST00000356922 VAT1LQ9HCJ6 419 aa4.72□□□□□ -1.65
LIG4-201ENST00000356922 TAOK2Q9UL54 1235 aa4.72□□□□□ -1.65
LIG4-201ENST00000356922 TMEM232C9JQI7 657 aa4.71□□□□□ -1.66
LIG4-201ENST00000356922 HMGB1P09429 215 aaKnown RBP4.71□□□□□ -1.66
LIG4-201ENST00000356922 ATXN8OSP0DMR3 200 aa4.71□□□□□ -1.66
LIG4-201ENST00000356922 PPIL2Q13356 520 aa4.71□□□□□ -1.66
LIG4-201ENST00000356922 RABEP1Q15276 862 aa4.71□□□□□ -1.66
LIG4-201ENST00000356922 SH3D19Q5HYK7 790 aa4.71□□□□□ -1.66
LIG4-201ENST00000356922 TYW1BQ6NUM6 668 aa4.71□□□□□ -1.66
LIG4-201ENST00000356922 PAXIP1Q6ZW49 1069 aaPredicted RBP4.71□□□□□ -1.66
LIG4-201ENST00000356922 RPAP3Q9H6T3 665 aaPredicted RBP4.71□□□□□ -1.66
LIG4-201ENST00000356922 KAT14Q9H8E8 782 aa4.71□□□□□ -1.66
LIG4-201ENST00000356922 ISY1Q9ULR0 285 aaKnown RBP4.71□□□□□ -1.66
LIG4-201ENST00000356922 RIPK3Q9Y572 518 aa4.71□□□□□ -1.66
LIG4-201ENST00000356922 DDX49Q9Y6V7 483 aaKnown RBP4.71□□□□□ -1.66
LIG4-201ENST00000356922 CDH23Q9H251 3354 aa4.71□□□□□ -1.66
LIG4-201ENST00000356922 CCL15-CCL14A0A0B4J2E2 113 aa4.71□□□□□ -1.66
LIG4-201ENST00000356922 ZNF543Q08ER8 600 aa4.71□□□□□ -1.66
LIG4-201ENST00000356922 CCL15Q16663 113 aa4.71□□□□□ -1.66
LIG4-201ENST00000356922 NFXL1Q6ZNB6 911 aa4.71□□□□□ -1.66
LIG4-201ENST00000356922 GADL1Q6ZQY3 521 aa4.71□□□□□ -1.66
LIG4-201ENST00000356922 CCDC83Q8IWF9 413 aa4.71□□□□□ -1.66
LIG4-201ENST00000356922 HOOK2Q96ED9 719 aa4.71□□□□□ -1.66
LIG4-201ENST00000356922 SLC12A7Q9Y666 1083 aa4.71□□□□□ -1.66
LIG4-201ENST00000356922 ZNF536O15090 1300 aa4.71□□□□□ -1.66
LIG4-201ENST00000356922 WDR19Q8NEZ3 1342 aa4.71□□□□□ -1.66
LIG4-201ENST00000356922 GOLGA8BA8MQT2 603 aa4.71□□□□□ -1.66
LIG4-201ENST00000356922 KLRF2D3W0D1 207 aa4.71□□□□□ -1.66
LIG4-201ENST00000356922 HSPA6P17066 643 aa4.71□□□□□ -1.66
LIG4-201ENST00000356922 SLC1A4P43007 532 aa4.71□□□□□ -1.66
LIG4-201ENST00000356922 FGD1P98174 961 aa4.71□□□□□ -1.66
LIG4-201ENST00000356922 PKN1Q16512 942 aa4.71□□□□□ -1.66
LIG4-201ENST00000356922 CATSPERGQ6ZRH7 1159 aa4.71□□□□□ -1.66
LIG4-201ENST00000356922 ADGRF4Q8IZF3 695 aa4.71□□□□□ -1.66
LIG4-201ENST00000356922 GMCL1P1Q8NEA9 526 aa4.71□□□□□ -1.66
LIG4-201ENST00000356922 TBC1D5Q92609 795 aa4.71□□□□□ -1.66
LIG4-201ENST00000356922 FEZ1Q99689 392 aa4.71□□□□□ -1.66
LIG4-201ENST00000356922 JMJD4Q9H9V9 463 aa4.71□□□□□ -1.66
LIG4-201ENST00000356922 BTBD7Q9P203 1132 aa4.71□□□□□ -1.66
LIG4-201ENST00000356922 TSKSQ9UJT2 592 aa4.71□□□□□ -1.66
LIG4-201ENST00000356922 LIMCH1Q9UPQ0 1083 aa4.71□□□□□ -1.66
LIG4-201ENST00000356922 WDR33Q9C0J8 1336 aaKnown RBP4.7□□□□□ -1.66
LIG4-201ENST00000356922 CCDC69A6NI79 296 aa4.7□□□□□ -1.66
LIG4-201ENST00000356922 PDHXO00330 501 aa4.7□□□□□ -1.66
LIG4-201ENST00000356922 CXCL11O14625 94 aa4.7□□□□□ -1.66
LIG4-201ENST00000356922 ZBTB43O43298 467 aa4.7□□□□□ -1.66
LIG4-201ENST00000356922 BMP3P12645 472 aa4.7□□□□□ -1.66
LIG4-201ENST00000356922 CTGFP29279 349 aa4.7□□□□□ -1.66
LIG4-201ENST00000356922 OTUD7BQ6GQQ9 843 aa4.7□□□□□ -1.66
LIG4-201ENST00000356922 ATG4CQ96DT6 458 aa4.7□□□□□ -1.66
LIG4-201ENST00000356922 DDX11Q96FC9 970 aa4.7□□□□□ -1.66
LIG4-201ENST00000356922 AGBL1Q96MI9 1066 aa4.7□□□□□ -1.66
LIG4-201ENST00000356922 PURBQ96QR8 312 aaKnown RBP4.7□□□□□ -1.66
LIG4-201ENST00000356922 ANP32EQ9BTT0 268 aa4.7□□□□□ -1.66
LIG4-201ENST00000356922 ASCC2Q9H1I8 757 aaPredicted RBP4.7□□□□□ -1.66
LIG4-201ENST00000356922 RBPJLQ9UBG7 517 aa4.7□□□□□ -1.66
LIG4-201ENST00000356922 TESPA1A2RU30 521 aaPredicted RBP4.7□□□□□ -1.66
LIG4-201ENST00000356922 SPDYE16A6NNV3 312 aaPredicted RBP4.7□□□□□ -1.66
LIG4-201ENST00000356922 PFKFB2O60825 505 aa4.7□□□□□ -1.66
LIG4-201ENST00000356922 CNMDO75829 334 aa4.7□□□□□ -1.66
LIG4-201ENST00000356922 PKP1Q13835 747 aa4.7□□□□□ -1.66
LIG4-201ENST00000356922 GRM4Q14833 912 aa4.7□□□□□ -1.66
LIG4-201ENST00000356922 KIFC2Q96AC6 838 aa4.7□□□□□ -1.66
LIG4-201ENST00000356922 ZNF274Q96GC6 653 aaPredicted RBP4.7□□□□□ -1.66
LIG4-201ENST00000356922 GMCL1Q96IK5 515 aa4.7□□□□□ -1.66
LIG4-201ENST00000356922 CHAMP1Q96JM3 812 aa4.7□□□□□ -1.66
LIG4-201ENST00000356922 C12orf42Q96LP6 360 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms