RNA–Protein interactions for RNA: ENST00000344626.8

SMARCA4-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best) BASIC

Gene SMARCA4, Length 5,392 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-201ENST00000344626 PRR16Q569H4 304 aa18.36■□□□□ 0.53
SMARCA4-201ENST00000344626 INTS5Q6P9B9 1019 aaKnown RBP18.36■□□□□ 0.53
SMARCA4-201ENST00000344626 MIER3Q7Z3K6 550 aa18.36■□□□□ 0.53
SMARCA4-201ENST00000344626 LUZP1Q86V48 1076 aa18.36■□□□□ 0.53
SMARCA4-201ENST00000344626 HACE1Q8IYU2 909 aa18.36■□□□□ 0.53
SMARCA4-201ENST00000344626 PUS7LQ9H0K6 701 aaKnown RBP18.36■□□□□ 0.53
SMARCA4-201ENST00000344626 KCNH3Q9ULD8 1083 aa18.36■□□□□ 0.53
SMARCA4-201ENST00000344626 USP17L5A8MUK1 530 aa18.36■□□□□ 0.53
SMARCA4-201ENST00000344626 SCG2P13521 617 aa18.36■□□□□ 0.53
SMARCA4-201ENST00000344626 KDM3AQ9Y4C1 1321 aa18.36■□□□□ 0.53
SMARCA4-201ENST00000344626 WDR44Q5JSH3 913 aa18.36■□□□□ 0.53
SMARCA4-201ENST00000344626 SLFN12Q8IYM2 578 aa18.36■□□□□ 0.53
SMARCA4-201ENST00000344626 ADCY5O95622 1261 aa18.36■□□□□ 0.53
SMARCA4-201ENST00000344626 NEK11Q8NG66 645 aa18.36■□□□□ 0.53
SMARCA4-201ENST00000344626 CDK8P49336 464 aa18.35■□□□□ 0.53
SMARCA4-201ENST00000344626 CDC37L1Q7L3B6 337 aa18.35■□□□□ 0.53
SMARCA4-201ENST00000344626 TPH2Q8IWU9 490 aa18.35■□□□□ 0.53
SMARCA4-201ENST00000344626 MAP7D2Q96T17 732 aa18.35■□□□□ 0.53
SMARCA4-201ENST00000344626 ZRSR2Q15696 482 aaKnown RBP18.35■□□□□ 0.53
SMARCA4-201ENST00000344626 AOPEPQ8N6M6 819 aa18.35■□□□□ 0.53
SMARCA4-201ENST00000344626 KIF18AQ8NI77 898 aa18.35■□□□□ 0.53
SMARCA4-201ENST00000344626 GPKOWQ92917 476 aaPredicted RBP eCLIP18.35■□□□□ 0.53
SMARCA4-201ENST00000344626 MAP4K1Q92918 833 aa18.35■□□□□ 0.53
SMARCA4-201ENST00000344626 ZSWIM6Q9HCJ5 1215 aa18.35■□□□□ 0.53
SMARCA4-201ENST00000344626 RTEL1Q9NZ71 1219 aa18.35■□□□□ 0.53
SMARCA4-201ENST00000344626 EIF3JO75822 258 aaKnown RBP18.35■□□□□ 0.53
SMARCA4-201ENST00000344626 ADD1P35611 737 aaKnown RBP18.35■□□□□ 0.53
SMARCA4-201ENST00000344626 RASSF7Q02833 373 aa18.35■□□□□ 0.53
SMARCA4-201ENST00000344626 TMEM179Q6ZVK1 233 aa18.35■□□□□ 0.53
SMARCA4-201ENST00000344626 GBP3Q9H0R5 595 aa18.35■□□□□ 0.53
SMARCA4-201ENST00000344626 PFKFB2O60825 505 aa18.35■□□□□ 0.53
SMARCA4-201ENST00000344626 PRPHP41219 470 aa18.35■□□□□ 0.53
SMARCA4-201ENST00000344626 RAD51AP2Q09MP3 1159 aa18.35■□□□□ 0.53
SMARCA4-201ENST00000344626 BIRC3Q13489 604 aa18.35■□□□□ 0.53
SMARCA4-201ENST00000344626 MXD3Q9BW11 206 aa18.35■□□□□ 0.53
SMARCA4-201ENST00000344626 USP17L10C9JJH3 530 aa18.34■□□□□ 0.53
SMARCA4-201ENST00000344626 NTSR2O95665 410 aa18.34■□□□□ 0.53
SMARCA4-201ENST00000344626 OSBP2Q969R2 916 aa18.34■□□□□ 0.53
SMARCA4-201ENST00000344626 LRRC45Q96CN5 670 aa18.34■□□□□ 0.53
SMARCA4-201ENST00000344626 TRAF5O00463 557 aa18.34■□□□□ 0.53
SMARCA4-201ENST00000344626 TNNT1P13805 278 aa18.34■□□□□ 0.53
SMARCA4-201ENST00000344626 SCARF1Q14162 830 aa18.34■□□□□ 0.53
SMARCA4-201ENST00000344626 HSP90AA4PQ58FG1 418 aa18.34■□□□□ 0.53
SMARCA4-201ENST00000344626 MTERF4Q7Z6M4 381 aaKnown RBP18.34■□□□□ 0.53
SMARCA4-201ENST00000344626 WDR70Q9NW82 654 aa18.34■□□□□ 0.53
SMARCA4-201ENST00000344626 M0R2C6 588 aa18.34■□□□□ 0.53
SMARCA4-201ENST00000344626 CSPG5O95196 566 aa18.34■□□□□ 0.53
SMARCA4-201ENST00000344626 MCM3P25205 808 aa18.34■□□□□ 0.53
SMARCA4-201ENST00000344626 ACTN2P35609 894 aa18.34■□□□□ 0.53
SMARCA4-201ENST00000344626 MYO3AQ8NEV4 1616 aa18.34■□□□□ 0.53
SMARCA4-201ENST00000344626 TNPO2O14787 897 aaKnown RBP18.34■□□□□ 0.53
SMARCA4-201ENST00000344626 MTX1Q13505 466 aa18.34■□□□□ 0.53
SMARCA4-201ENST00000344626 RSBN1LQ6PCB5 846 aaPredicted RBP18.34■□□□□ 0.53
SMARCA4-201ENST00000344626 CABP7Q86V35 215 aa18.34■□□□□ 0.53
SMARCA4-201ENST00000344626 HOOK3Q86VS8 718 aa18.34■□□□□ 0.53
SMARCA4-201ENST00000344626 NAA15Q9BXJ9 866 aaKnown RBP18.34■□□□□ 0.53
SMARCA4-201ENST00000344626 A0A1B0GVL5 298 aa18.33■□□□□ 0.53
SMARCA4-201ENST00000344626 RAET1EQ8TD07 263 aa18.33■□□□□ 0.53
SMARCA4-201ENST00000344626 TMEM106CQ9BVX2 250 aa18.33■□□□□ 0.53
SMARCA4-201ENST00000344626 hCG_1984214I3L0E3 225 aa18.33■□□□□ 0.53
SMARCA4-201ENST00000344626 ZNF713Q8N859 430 aaPredicted RBP18.33■□□□□ 0.53
SMARCA4-201ENST00000344626 DNAJC25Q9H1X3 360 aa18.33■□□□□ 0.53
SMARCA4-201ENST00000344626 UBXN4Q92575 508 aa18.33■□□□□ 0.52
SMARCA4-201ENST00000344626 SEPT2Q15019 361 aa18.33■□□□□ 0.52
SMARCA4-201ENST00000344626 ZSCAN30Q86W11 494 aa18.32■□□□□ 0.52
SMARCA4-201ENST00000344626 PLA2G4DQ86XP0 818 aa18.32■□□□□ 0.52
SMARCA4-201ENST00000344626 SLC8A3P57103 927 aa18.32■□□□□ 0.52
SMARCA4-201ENST00000344626 USP17L2Q6R6M4 530 aa18.32■□□□□ 0.52
SMARCA4-201ENST00000344626 HOXC10Q9NYD6 342 aa18.32■□□□□ 0.52
SMARCA4-201ENST00000344626 KIAA1210Q9ULL0 1709 aa18.32■□□□□ 0.52
SMARCA4-201ENST00000344626 DDNO94850 711 aaPredicted RBP18.32■□□□□ 0.52
SMARCA4-201ENST00000344626 TYRO3Q06418 890 aa18.32■□□□□ 0.52
SMARCA4-201ENST00000344626 CEP135Q66GS9 1140 aa18.32■□□□□ 0.52
SMARCA4-201ENST00000344626 FAM160B2Q86V87 743 aa18.32■□□□□ 0.52
SMARCA4-201ENST00000344626 ZNF354CQ86Y25 554 aa18.32■□□□□ 0.52
SMARCA4-201ENST00000344626 IWS1Q96ST2 819 aa18.32■□□□□ 0.52
SMARCA4-201ENST00000344626 NEK8Q86SG6 692 aa18.31■□□□□ 0.52
SMARCA4-201ENST00000344626 TEKT3Q9BXF9 490 aa18.31■□□□□ 0.52
SMARCA4-201ENST00000344626 RRAGCQ9HB90 399 aa18.31■□□□□ 0.52
SMARCA4-201ENST00000344626 DNA2P51530 1060 aa18.31■□□□□ 0.52
SMARCA4-201ENST00000344626 TRPC3Q13507 836 aa18.31■□□□□ 0.52
SMARCA4-201ENST00000344626 CETN3O15182 167 aa18.31■□□□□ 0.52
SMARCA4-201ENST00000344626 STX17P56962 302 aa18.31■□□□□ 0.52
SMARCA4-201ENST00000344626 UBXN1Q04323 297 aa18.31■□□□□ 0.52
SMARCA4-201ENST00000344626 CYP2D6P10635 497 aa18.31■□□□□ 0.52
SMARCA4-201ENST00000344626 DCAF17Q5H9S7 520 aaPredicted RBP18.31■□□□□ 0.52
SMARCA4-201ENST00000344626 MYCT1Q8N699 235 aa18.31■□□□□ 0.52
SMARCA4-201ENST00000344626 RABGAP1Q9Y3P9 1069 aa18.31■□□□□ 0.52
SMARCA4-201ENST00000344626 GSTTP1A0A1W2PQM5 241 aa18.31■□□□□ 0.52
SMARCA4-201ENST00000344626 CYP2E1P05181 493 aaPredicted RBP18.31■□□□□ 0.52
SMARCA4-201ENST00000344626 LMBR1Q8WVP7 490 aa18.31■□□□□ 0.52
SMARCA4-201ENST00000344626 LSG1Q9H089 658 aaKnown RBP18.31■□□□□ 0.52
SMARCA4-201ENST00000344626 PODXL2Q9NZ53 605 aa18.31■□□□□ 0.52
SMARCA4-201ENST00000344626 EPHX2P34913 555 aa18.3■□□□□ 0.52
SMARCA4-201ENST00000344626 ME3Q16798 604 aa18.3■□□□□ 0.52
SMARCA4-201ENST00000344626 HERC4Q5GLZ8 1057 aaPredicted RBP18.3■□□□□ 0.52
SMARCA4-201ENST00000344626 FAM160B1Q5W0V3 765 aa18.3■□□□□ 0.52
SMARCA4-201ENST00000344626 ZEB2O60315 1214 aa18.3■□□□□ 0.52
SMARCA4-201ENST00000344626 TMOD1P28289 359 aa18.3■□□□□ 0.52
SMARCA4-201ENST00000344626 PRPF4BQ13523 1007 aaKnown RBP18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms