RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 LPIN2Q92539 896 aa25.25■■□□□ 1.63
TRIM28-202ENST00000341753 REXO2Q9Y3B8 237 aaKnown RBP25.25■■□□□ 1.63
TRIM28-202ENST00000341753 FGFR2P21802 821 aa25.24■■□□□ 1.63
TRIM28-202ENST00000341753 GSDMAQ96QA5 445 aa25.24■■□□□ 1.63
TRIM28-202ENST00000341753 MYH3P11055 1940 aa25.24■■□□□ 1.63
TRIM28-202ENST00000341753 RNF40O75150 1001 aa25.24■■□□□ 1.63
TRIM28-202ENST00000341753 ARID4AP29374 1257 aaPredicted RBP25.24■■□□□ 1.63
TRIM28-202ENST00000341753 COPB1P53618 953 aaKnown RBP25.24■■□□□ 1.63
TRIM28-202ENST00000341753 GSPT2Q8IYD1 628 aaKnown RBP25.24■■□□□ 1.63
TRIM28-202ENST00000341753 NIP7Q9Y221 180 aaKnown RBP eCLIP25.24■■□□□ 1.63
TRIM28-202ENST00000341753 XDHP47989 1333 aa25.24■■□□□ 1.63
TRIM28-202ENST00000341753 LOC102724428A0A0B4J2F2 783 aa25.23■■□□□ 1.63
TRIM28-202ENST00000341753 PES1O00541 588 aaKnown RBP25.23■■□□□ 1.63
TRIM28-202ENST00000341753 SIK1P57059 783 aa25.23■■□□□ 1.63
TRIM28-202ENST00000341753 TUBB2AQ13885 445 aa25.23■■□□□ 1.63
TRIM28-202ENST00000341753 CCDC51Q96ER9 411 aa25.23■■□□□ 1.63
TRIM28-202ENST00000341753 TUBB2BQ9BVA1 445 aa25.23■■□□□ 1.63
TRIM28-202ENST00000341753 GBP3Q9H0R5 595 aa25.23■■□□□ 1.63
TRIM28-202ENST00000341753 MINDY4BA8MYZ0 360 aa25.23■■□□□ 1.63
TRIM28-202ENST00000341753 DOT1LQ8TEK3 1739 aa25.23■■□□□ 1.63
TRIM28-202ENST00000341753 COL16A1Q07092 1604 aaPredicted RBP25.23■■□□□ 1.63
TRIM28-202ENST00000341753 ZNF512BQ96KM6 892 aaPredicted RBP25.22■■□□□ 1.63
TRIM28-202ENST00000341753 MMS19Q96T76 1030 aa25.22■■□□□ 1.63
TRIM28-202ENST00000341753 UBAC1Q9BSL1 405 aa25.22■■□□□ 1.63
TRIM28-202ENST00000341753 MAP3K12Q12852 859 aa25.22■■□□□ 1.63
TRIM28-202ENST00000341753 CCDC148Q8NFR7 591 aa25.22■■□□□ 1.63
TRIM28-202ENST00000341753 V9GY48 417 aaPredicted RBP25.22■■□□□ 1.63
TRIM28-202ENST00000341753 COL14A1Q05707 1796 aaKnown RBP25.22■■□□□ 1.63
TRIM28-202ENST00000341753 CCDC196A0A1B0GTZ2 297 aa25.21■■□□□ 1.63
TRIM28-202ENST00000341753 KCNJ18B7U540 433 aa25.21■■□□□ 1.63
TRIM28-202ENST00000341753 CAMTA2O94983 1202 aa25.21■■□□□ 1.63
TRIM28-202ENST00000341753 FECHP22830 423 aa25.21■■□□□ 1.63
TRIM28-202ENST00000341753 KRT2P35908 639 aa25.21■■□□□ 1.63
TRIM28-202ENST00000341753 UBXN1Q04323 297 aa25.21■■□□□ 1.63
TRIM28-202ENST00000341753 KCNJ12Q14500 433 aa25.21■■□□□ 1.63
TRIM28-202ENST00000341753 ANKRD36CQ5JPF3 1778 aa25.21■■□□□ 1.63
TRIM28-202ENST00000341753 ITIH6Q6UXX5 1313 aa25.21■■□□□ 1.63
TRIM28-202ENST00000341753 EIF3CLB5ME19 914 aaKnown RBP25.21■■□□□ 1.63
TRIM28-202ENST00000341753 PLEKHA8P1O95397 391 aa25.21■■□□□ 1.63
TRIM28-202ENST00000341753 ATP1A1P05023 1023 aaKnown RBP25.21■■□□□ 1.63
TRIM28-202ENST00000341753 PDE4CQ08493 712 aa25.21■■□□□ 1.63
TRIM28-202ENST00000341753 PKN1Q16512 942 aa25.21■■□□□ 1.63
TRIM28-202ENST00000341753 STAG1Q8WVM7 1258 aa25.21■■□□□ 1.63
TRIM28-202ENST00000341753 EIF3CQ99613 913 aaKnown RBP25.21■■□□□ 1.63
TRIM28-202ENST00000341753 SYF2O95926 243 aaKnown RBP25.21■■□□□ 1.63
TRIM28-202ENST00000341753 NELFBQ8WX92 580 aa25.21■■□□□ 1.63
TRIM28-202ENST00000341753 LIMA1Q9UHB6 759 aaKnown RBP25.21■■□□□ 1.63
TRIM28-202ENST00000341753 GDAQ9Y2T3 454 aa25.21■■□□□ 1.63
TRIM28-202ENST00000341753 EPN1Q9Y6I3 576 aaPredicted RBP25.21■■□□□ 1.63
TRIM28-202ENST00000341753 ROBO1Q9Y6N7 1651 aa25.21■■□□□ 1.63
TRIM28-202ENST00000341753 SEMA3EO15041 775 aa25.2■■□□□ 1.62
TRIM28-202ENST00000341753 NDUFA10O95299 355 aa25.2■■□□□ 1.62
TRIM28-202ENST00000341753 UQCRFS1P1P0C7P4 283 aa25.2■■□□□ 1.62
TRIM28-202ENST00000341753 SLC5A1P13866 664 aa25.2■■□□□ 1.62
TRIM28-202ENST00000341753 NOP2P46087 812 aaKnown RBP25.2■■□□□ 1.62
TRIM28-202ENST00000341753 PTGDRQ13258 359 aa25.2■■□□□ 1.62
TRIM28-202ENST00000341753 MTRQ99707 1265 aa25.2■■□□□ 1.62
TRIM28-202ENST00000341753 MROH5Q6ZUA9 1318 aa25.2■■□□□ 1.62
TRIM28-202ENST00000341753 TCP11X2Q5H9J9 407 aa25.2■■□□□ 1.62
TRIM28-202ENST00000341753 PPP1R3FQ6ZSY5 799 aaPredicted RBP25.2■■□□□ 1.62
TRIM28-202ENST00000341753 SDR42E1Q8WUS8 393 aa25.2■■□□□ 1.62
TRIM28-202ENST00000341753 TNKSO95271 1327 aa25.2■■□□□ 1.62
TRIM28-202ENST00000341753 SPATA31A1Q5TZJ5 1347 aa25.2■■□□□ 1.62
TRIM28-202ENST00000341753 TRIM49BA6NDI0 452 aa25.19■■□□□ 1.62
TRIM28-202ENST00000341753 PAK1Q13153 545 aa25.19■■□□□ 1.62
TRIM28-202ENST00000341753 C3orf67Q6ZVT6 689 aa25.19■■□□□ 1.62
TRIM28-202ENST00000341753 PACS2Q86VP3 889 aa25.19■■□□□ 1.62
TRIM28-202ENST00000341753 COL4A1P02462 1669 aa25.18■■□□□ 1.62
TRIM28-202ENST00000341753 TTC26A0AVF1 554 aa25.18■■□□□ 1.62
TRIM28-202ENST00000341753 WDR93Q6P2C0 686 aa25.18■■□□□ 1.62
TRIM28-202ENST00000341753 MSL3Q8N5Y2 521 aaKnown RBP25.18■■□□□ 1.62
TRIM28-202ENST00000341753 PHF20Q9BVI0 1012 aa25.18■■□□□ 1.62
TRIM28-202ENST00000341753 NACAP1Q9BZK3 213 aa25.18■■□□□ 1.62
TRIM28-202ENST00000341753 ACBD3Q9H3P7 528 aa25.18■■□□□ 1.62
TRIM28-202ENST00000341753 RPS6KA5O75582 802 aa25.18■■□□□ 1.62
TRIM28-202ENST00000341753 USP14P54578 494 aa25.18■■□□□ 1.62
TRIM28-202ENST00000341753 CT47A1Q5JQC4 288 aaPredicted RBP25.18■■□□□ 1.62
TRIM28-202ENST00000341753 BICDL1Q6ZP65 573 aa25.18■■□□□ 1.62
TRIM28-202ENST00000341753 TRAPPC11Q7Z392 1133 aa25.18■■□□□ 1.62
TRIM28-202ENST00000341753 GOLGA6L1Q8N7Z2 621 aa25.18■■□□□ 1.62
TRIM28-202ENST00000341753 EEF2KMTQ96G04 330 aa25.18■■□□□ 1.62
TRIM28-202ENST00000341753 MED4Q9NPJ6 270 aa25.18■■□□□ 1.62
TRIM28-202ENST00000341753 NID2Q14112 1375 aa25.18■■□□□ 1.62
TRIM28-202ENST00000341753 TUBB4BP68371 445 aa25.17■■□□□ 1.62
TRIM28-202ENST00000341753 TTC38Q5R3I4 469 aa25.17■■□□□ 1.62
TRIM28-202ENST00000341753 AFAP1L1Q8TED9 768 aa25.17■■□□□ 1.62
TRIM28-202ENST00000341753 MYO1AQ9UBC5 1043 aa25.17■■□□□ 1.62
TRIM28-202ENST00000341753 RNF26Q9BY78 433 aaPredicted RBP25.17■■□□□ 1.62
TRIM28-202ENST00000341753 HPCAL4Q9UM19 191 aa25.17■■□□□ 1.62
TRIM28-202ENST00000341753 XBP1P17861 261 aa25.16■■□□□ 1.62
TRIM28-202ENST00000341753 CCDC122Q5T0U0 273 aa25.16■■□□□ 1.62
TRIM28-202ENST00000341753 FERMT2Q96AC1 680 aa25.16■■□□□ 1.62
TRIM28-202ENST00000341753 RWDD2AQ9UIY3 292 aa25.16■■□□□ 1.62
TRIM28-202ENST00000341753 ADAMTS3O15072 1205 aa25.16■■□□□ 1.62
TRIM28-202ENST00000341753 ZNF185O15231 689 aa25.16■■□□□ 1.62
TRIM28-202ENST00000341753 NTSR2O95665 410 aa25.16■■□□□ 1.62
TRIM28-202ENST00000341753 MYBL2P10244 700 aa25.16■■□□□ 1.62
TRIM28-202ENST00000341753 HERVK_113P62684 666 aa25.16■■□□□ 1.62
TRIM28-202ENST00000341753 PPARAQ07869 468 aa25.16■■□□□ 1.62
TRIM28-202ENST00000341753 RABEP2Q9H5N1 569 aa25.16■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms