RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 RNF168Q8IYW5 571 aaPredicted RBP13.92□□□□□ -0.18
SDC3-201ENST00000336798 LIG4P49917 911 aa13.92□□□□□ -0.18
SDC3-201ENST00000336798 PARP10Q53GL7 1025 aa13.92□□□□□ -0.18
SDC3-201ENST00000336798 TMTC4Q5T4D3 741 aa13.92□□□□□ -0.18
SDC3-201ENST00000336798 EDC3Q96F86 508 aaKnown RBP13.92□□□□□ -0.18
SDC3-201ENST00000336798 ABCC1P33527 1531 aa13.92□□□□□ -0.18
SDC3-201ENST00000336798 GIGYF1O75420 1035 aaPredicted RBP13.91□□□□□ -0.18
SDC3-201ENST00000336798 LGSNQ5TDP6 509 aa13.91□□□□□ -0.18
SDC3-201ENST00000336798 CCDC87Q9NVE4 849 aa13.91□□□□□ -0.18
SDC3-201ENST00000336798 H7C1D1 291 aa13.91□□□□□ -0.18
SDC3-201ENST00000336798 INPP5BP32019 993 aa13.91□□□□□ -0.18
SDC3-201ENST00000336798 KDM5BQ9UGL1 1544 aa13.91□□□□□ -0.18
SDC3-201ENST00000336798 TEX14Q8IWB6 1497 aa13.91□□□□□ -0.18
SDC3-201ENST00000336798 B4GALNT4Q76KP1 1039 aa13.91□□□□□ -0.18
SDC3-201ENST00000336798 OTUD6AQ7L8S5 288 aa13.91□□□□□ -0.18
SDC3-201ENST00000336798 C19orf44Q9H6X5 657 aa13.91□□□□□ -0.18
SDC3-201ENST00000336798 SMYD2Q9NRG4 433 aa13.91□□□□□ -0.18
SDC3-201ENST00000336798 K7ENM7 598 aa13.91□□□□□ -0.18
SDC3-201ENST00000336798 P4HA1P13674 534 aa13.91□□□□□ -0.18
SDC3-201ENST00000336798 XKR9Q5GH70 373 aa13.91□□□□□ -0.18
SDC3-201ENST00000336798 NUP58Q9BVL2 599 aa13.91□□□□□ -0.18
SDC3-201ENST00000336798 EFCC1Q9HA90 598 aa13.91□□□□□ -0.18
SDC3-201ENST00000336798 SPC25Q9HBM1 224 aa13.91□□□□□ -0.18
SDC3-201ENST00000336798 FLOT1O75955 427 aa13.91□□□□□ -0.18
SDC3-201ENST00000336798 KIF9Q9HAQ2 790 aa13.91□□□□□ -0.18
SDC3-201ENST00000336798 ZBTB40Q9NUA8 1239 aa13.91□□□□□ -0.18
SDC3-201ENST00000336798 RABGAP1Q9Y3P9 1069 aa13.91□□□□□ -0.18
SDC3-201ENST00000336798 PALM3A6NDB9 673 aaPredicted RBP13.9□□□□□ -0.18
SDC3-201ENST00000336798 RAB20Q9NX57 234 aa13.9□□□□□ -0.18
SDC3-201ENST00000336798 YTHDC2Q9H6S0 1430 aaKnown RBP13.9□□□□□ -0.18
SDC3-201ENST00000336798 DNAJC10Q8IXB1 793 aa13.9□□□□□ -0.18
SDC3-201ENST00000336798 ZNF710Q8N1W2 664 aa13.9□□□□□ -0.18
SDC3-201ENST00000336798 LPIN2Q92539 896 aa13.9□□□□□ -0.18
SDC3-201ENST00000336798 IFIH1Q9BYX4 1025 aaKnown RBP13.9□□□□□ -0.18
SDC3-201ENST00000336798 TUBB4BP68371 445 aa13.9□□□□□ -0.18
SDC3-201ENST00000336798 UBXN2AP68543 259 aa13.9□□□□□ -0.18
SDC3-201ENST00000336798 CCDC13Q8IYE1 715 aa13.9□□□□□ -0.18
SDC3-201ENST00000336798 HACE1Q8IYU2 909 aa13.9□□□□□ -0.18
SDC3-201ENST00000336798 REXO1Q8N1G1 1221 aaKnown RBP13.9□□□□□ -0.18
SDC3-201ENST00000336798 SDR42E1Q8WUS8 393 aa13.9□□□□□ -0.18
SDC3-201ENST00000336798 GPKOWQ92917 476 aaPredicted RBP eCLIP13.9□□□□□ -0.18
SDC3-201ENST00000336798 UHRF1BP1LA0JNW5 1464 aa13.9□□□□□ -0.18
SDC3-201ENST00000336798 KRT71Q3SY84 523 aa13.9□□□□□ -0.18
SDC3-201ENST00000336798 KIAA0825Q8IV33 1275 aa13.9□□□□□ -0.18
SDC3-201ENST00000336798 PARD3BQ8TEW8 1205 aa13.9□□□□□ -0.18
SDC3-201ENST00000336798 IP6K1Q92551 441 aa13.9□□□□□ -0.18
SDC3-201ENST00000336798 DPH5Q9H2P9 285 aa13.9□□□□□ -0.18
SDC3-201ENST00000336798 HAUS2Q9NVX0 235 aa13.9□□□□□ -0.18
SDC3-201ENST00000336798 BAG2O95816 211 aa13.9□□□□□ -0.18
SDC3-201ENST00000336798 ZNF853P0CG23 659 aa13.9□□□□□ -0.18
SDC3-201ENST00000336798 ADCY8P40145 1251 aa13.9□□□□□ -0.18
SDC3-201ENST00000336798 ZNF75DP51815 510 aa13.9□□□□□ -0.18
SDC3-201ENST00000336798 ANKRD20A3Q5VUR7 823 aa13.9□□□□□ -0.18
SDC3-201ENST00000336798 PIK3R5Q8WYR1 880 aa13.9□□□□□ -0.18
SDC3-201ENST00000336798 ERO1AQ96HE7 468 aa13.9□□□□□ -0.18
SDC3-201ENST00000336798 SMC5Q8IY18 1101 aa13.89□□□□□ -0.19
SDC3-201ENST00000336798 SYCE1Q8N0S2 351 aa13.89□□□□□ -0.19
SDC3-201ENST00000336798 KCNK3O14649 394 aa13.89□□□□□ -0.19
SDC3-201ENST00000336798 KCNA6P17658 529 aa13.89□□□□□ -0.19
SDC3-201ENST00000336798 CFAP221Q4G0U5 840 aa13.89□□□□□ -0.19
SDC3-201ENST00000336798 MFSD14BQ5SR56 506 aa13.89□□□□□ -0.19
SDC3-201ENST00000336798 RYBPQ8N488 228 aaPredicted RBP13.89□□□□□ -0.19
SDC3-201ENST00000336798 INTS4Q96HW7 963 aaKnown RBP13.89□□□□□ -0.19
SDC3-201ENST00000336798 CABS1Q96KC9 395 aa13.89□□□□□ -0.19
SDC3-201ENST00000336798 FNDC3AQ9Y2H6 1198 aaKnown RBP13.89□□□□□ -0.19
SDC3-201ENST00000336798 NPATQ14207 1427 aa13.89□□□□□ -0.19
SDC3-201ENST00000336798 MAP3K19Q56UN5 1328 aa13.89□□□□□ -0.19
SDC3-201ENST00000336798 CCDC127Q96BQ5 260 aa13.89□□□□□ -0.19
SDC3-201ENST00000336798 STX2P32856 288 aa13.89□□□□□ -0.19
SDC3-201ENST00000336798 PPARAQ07869 468 aa13.89□□□□□ -0.19
SDC3-201ENST00000336798 ATP2A3Q93084 1043 aa13.89□□□□□ -0.19
SDC3-201ENST00000336798 VCXQ9H320 206 aa13.89□□□□□ -0.19
SDC3-201ENST00000336798 MCUQ8NE86 351 aa13.89□□□□□ -0.19
SDC3-201ENST00000336798 DDX41Q9UJV9 622 aaKnown RBP13.89□□□□□ -0.19
SDC3-201ENST00000336798 SPDYE2BA6NHP3 402 aa13.88□□□□□ -0.19
SDC3-201ENST00000336798 SPDYE6P0CI01 402 aa13.88□□□□□ -0.19
SDC3-201ENST00000336798 GYG1P46976 350 aa13.88□□□□□ -0.19
SDC3-201ENST00000336798 SESN3P58005 492 aa13.88□□□□□ -0.19
SDC3-201ENST00000336798 TRIM68Q6AZZ1 485 aa13.88□□□□□ -0.19
SDC3-201ENST00000336798 ANKRD35Q8N283 1001 aa13.88□□□□□ -0.19
SDC3-201ENST00000336798 PPP1R16BQ96T49 567 aa13.88□□□□□ -0.19
SDC3-201ENST00000336798 DNAJC5BQ9UF47 199 aa13.88□□□□□ -0.19
SDC3-201ENST00000336798 AMFRQ9UKV5 643 aa13.88□□□□□ -0.19
SDC3-201ENST00000336798 PNMA6EA0A0J9YXQ4 647 aa13.88□□□□□ -0.19
SDC3-201ENST00000336798 JADE1Q6IE81 842 aa13.88□□□□□ -0.19
SDC3-201ENST00000336798 EEF2KMTQ96G04 330 aa13.88□□□□□ -0.19
SDC3-201ENST00000336798 TRIM56Q9BRZ2 755 aaKnown RBP13.88□□□□□ -0.19
SDC3-201ENST00000336798 NR1I2O75469 434 aa13.88□□□□□ -0.19
SDC3-201ENST00000336798 TNNC2P02585 160 aa13.88□□□□□ -0.19
SDC3-201ENST00000336798 SLC12A1Q13621 1099 aa13.88□□□□□ -0.19
SDC3-201ENST00000336798 MAP7Q14244 749 aa13.88□□□□□ -0.19
SDC3-201ENST00000336798 TTBK2Q6IQ55 1244 aa13.88□□□□□ -0.19
SDC3-201ENST00000336798 WHAMMQ8TF30 809 aa13.88□□□□□ -0.19
SDC3-201ENST00000336798 ORAI2Q96SN7 254 aa13.88□□□□□ -0.19
SDC3-201ENST00000336798 DESI2Q9BSY9 194 aa13.88□□□□□ -0.19
SDC3-201ENST00000336798 USP19O94966 1318 aa13.88□□□□□ -0.19
SDC3-201ENST00000336798 HMGXB3Q12766 1538 aa13.88□□□□□ -0.19
SDC3-201ENST00000336798 PPP4R4Q6NUP7 873 aa13.88□□□□□ -0.19
SDC3-201ENST00000336798 MLKLQ8NB16 471 aa13.88□□□□□ -0.19
SDC3-201ENST00000336798 SUPT20HQ8NEM7 779 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms