RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 KANSL1Q7Z3B3 1105 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 TMEM199Q8N511 208 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 ACBD4Q8NC06 268 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 PLBD2Q8NHP8 589 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 CD99L2Q8TCZ2 262 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 TRAIPQ9BWF2 469 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 PCED1AQ9H1Q7 454 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 MKNK2Q9HBH9 465 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 DLGAP2Q9P1A6 1054 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 WNT16Q9UBV4 365 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 STAP2Q9UGK3 403 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 ZNF281Q9Y2X9 895 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 TRIM17Q9Y577 477 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 NRCAMQ92823 1304 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 SEPT4O43236 478 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 INHAP05111 366 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 INHBBP09529 407 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 U2AF1L5P0DN76 240 aaPredicted RBP2.12□□□□□ -2.07
LINC00643-201ENST00000334389 CSB-PGBD3P0DP91 1061 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 BMP3P12645 472 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 FBLN1P23142 703 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 NRLP54845 237 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 U2AF1Q01081 240 aaKnown RBP eCLIP2.12□□□□□ -2.07
LINC00643-201ENST00000334389 CCDC152Q4G0S7 254 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 C1orf141Q5JVX7 400 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 PLA2G2CQ5R387 149 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 LRSAM1Q6UWE0 723 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 ARMCX2Q7L311 632 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 WDR5BQ86VZ2 330 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 SCYL3Q8IZE3 742 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 MIGA1Q8NAN2 632 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 DNASE1L2Q92874 299 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 COA7Q96BR5 231 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 GPATCH3Q96I76 525 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 EIF4ENIF1Q9NRA8 985 aaKnown RBP2.12□□□□□ -2.07
LINC00643-201ENST00000334389 ACSL6Q9UKU0 697 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 IRAK3Q9Y616 596 aa2.12□□□□□ -2.07
LINC00643-201ENST00000334389 TDRD15B5MCY1 1934 aaKnown RBP2.11□□□□□ -2.07
LINC00643-201ENST00000334389 EP400Q96L91 3159 aa2.11□□□□□ -2.07
LINC00643-201ENST00000334389 KDM3AQ9Y4C1 1321 aa2.11□□□□□ -2.07
LINC00643-201ENST00000334389 DNAJC25-GNG10A0A024R161 153 aa2.11□□□□□ -2.07
LINC00643-201ENST00000334389 PSMD14O00487 310 aa2.11□□□□□ -2.07
LINC00643-201ENST00000334389 TRIM38O00635 465 aa2.11□□□□□ -2.07
LINC00643-201ENST00000334389 TCERG1O14776 1098 aaKnown RBP2.11□□□□□ -2.07
LINC00643-201ENST00000334389 ADAMTS4O75173 837 aa2.11□□□□□ -2.07
LINC00643-201ENST00000334389 SLURP2P0DP57 97 aa2.11□□□□□ -2.07
LINC00643-201ENST00000334389 SFTPCP11686 197 aa2.11□□□□□ -2.07
LINC00643-201ENST00000334389 POLGP54098 1239 aaPredicted RBP2.11□□□□□ -2.07
LINC00643-201ENST00000334389 LMOD3Q0VAK6 560 aa2.11□□□□□ -2.07
LINC00643-201ENST00000334389 CSRP2Q16527 193 aa2.11□□□□□ -2.07
LINC00643-201ENST00000334389 HSF5Q4G112 596 aaPredicted RBP2.11□□□□□ -2.07
LINC00643-201ENST00000334389 MAP1SQ66K74 1059 aaPredicted RBP2.11□□□□□ -2.07
LINC00643-201ENST00000334389 PPP1R3FQ6ZSY5 799 aaPredicted RBP2.11□□□□□ -2.07
LINC00643-201ENST00000334389 USP48Q86UV5 1035 aa2.11□□□□□ -2.07
LINC00643-201ENST00000334389 CMTR2Q8IYT2 770 aaKnown RBP2.11□□□□□ -2.07
LINC00643-201ENST00000334389 ZBTB38Q8NAP3 1195 aaPredicted RBP2.11□□□□□ -2.07
LINC00643-201ENST00000334389 SUMF1Q8NBK3 374 aa2.11□□□□□ -2.07
LINC00643-201ENST00000334389 PCSK9Q8NBP7 692 aaKnown RBP2.11□□□□□ -2.07
LINC00643-201ENST00000334389 AFAP1L1Q8TED9 768 aa2.11□□□□□ -2.07
LINC00643-201ENST00000334389 GLIS2Q9BZE0 524 aaPredicted RBP2.11□□□□□ -2.07
LINC00643-201ENST00000334389 AS3MTQ9HBK9 375 aa2.11□□□□□ -2.07
LINC00643-201ENST00000334389 OSGEPQ9NPF4 335 aa2.11□□□□□ -2.07
LINC00643-201ENST00000334389 GGA3Q9NZ52 723 aa2.11□□□□□ -2.07
LINC00643-201ENST00000334389 TRAK1Q9UPV9 953 aa2.11□□□□□ -2.07
LINC00643-201ENST00000334389 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP2.11□□□□□ -2.07
LINC00643-201ENST00000334389 MYH15Q9Y2K3 1946 aa2.11□□□□□ -2.07
LINC00643-201ENST00000334389 MYH4Q9Y623 1939 aa2.11□□□□□ -2.07
LINC00643-201ENST00000334389 NUP210LQ5VU65 1888 aa2.11□□□□□ -2.07
LINC00643-201ENST00000334389 H3BNC9 293 aa2.11□□□□□ -2.07
LINC00643-201ENST00000334389 TMCC2O75069 709 aa2.11□□□□□ -2.07
LINC00643-201ENST00000334389 CLASP2O75122 1294 aaKnown RBP2.11□□□□□ -2.07
LINC00643-201ENST00000334389 DDX58O95786 925 aaKnown RBP2.11□□□□□ -2.07
LINC00643-201ENST00000334389 LINC00271P0C7V0 271 aa2.11□□□□□ -2.07
LINC00643-201ENST00000334389 SRGAP2BP0DMP2 458 aa2.11□□□□□ -2.07
LINC00643-201ENST00000334389 ACTN1P12814 892 aa2.11□□□□□ -2.07
LINC00643-201ENST00000334389 PFKLP17858 780 aa2.11□□□□□ -2.07
LINC00643-201ENST00000334389 HOXA9P31269 272 aa2.11□□□□□ -2.07
LINC00643-201ENST00000334389 PTGER3P43115 390 aa2.11□□□□□ -2.07
LINC00643-201ENST00000334389 PSEN1P49768 467 aa2.11□□□□□ -2.07
LINC00643-201ENST00000334389 PTPN12Q05209 780 aaKnown RBP2.11□□□□□ -2.07
LINC00643-201ENST00000334389 CRTC2Q53ET0 693 aaPredicted RBP2.11□□□□□ -2.07
LINC00643-201ENST00000334389 DPP8Q6V1X1 898 aaPredicted RBP2.11□□□□□ -2.07
LINC00643-201ENST00000334389 RIC3Q7Z5B4 369 aa2.11□□□□□ -2.07
LINC00643-201ENST00000334389 MAP4K1Q92918 833 aa2.11□□□□□ -2.07
LINC00643-201ENST00000334389 ZNF576Q9H609 170 aa2.11□□□□□ -2.07
LINC00643-201ENST00000334389 ELAC1Q9H777 363 aaKnown RBP2.11□□□□□ -2.07
LINC00643-201ENST00000334389 AAASQ9NRG9 546 aa2.11□□□□□ -2.07
LINC00643-201ENST00000334389 TMX2Q9Y320 296 aa2.11□□□□□ -2.07
LINC00643-201ENST00000334389 PPME1Q9Y570 386 aa2.11□□□□□ -2.07
LINC00643-201ENST00000334389 ZNF318Q5VUA4 2279 aa2.11□□□□□ -2.07
LINC00643-201ENST00000334389 TEX51A0A1B0GUA7 166 aa2.1□□□□□ -2.07
LINC00643-201ENST00000334389 CCDC194A0A1B0GVG4 234 aa2.1□□□□□ -2.07
LINC00643-201ENST00000334389 PRAMEF22A3QJZ6 481 aa2.1□□□□□ -2.07
LINC00643-201ENST00000334389 GNAT3A8MTJ3 354 aa2.1□□□□□ -2.07
LINC00643-201ENST00000334389 ADCY3O60266 1144 aa2.1□□□□□ -2.07
LINC00643-201ENST00000334389 CIAO1O76071 339 aa2.1□□□□□ -2.07
LINC00643-201ENST00000334389 AOC1P19801 751 aa2.1□□□□□ -2.07
LINC00643-201ENST00000334389 TGM1P22735 817 aa2.1□□□□□ -2.07
LINC00643-201ENST00000334389 RTP1P59025 263 aa2.1□□□□□ -2.07
LINC00643-201ENST00000334389 XPCQ01831 940 aaPredicted RBP2.1□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms