RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 LEO1Q8WVC0 666 aaPredicted RBP15.32■□□□□ 0.04
LDLR-201ENST00000252444 FAM81BQ96LP2 452 aa15.32■□□□□ 0.04
LDLR-201ENST00000252444 SEPT11Q9NVA2 429 aaKnown RBP15.32■□□□□ 0.04
LDLR-201ENST00000252444 PNMA6FA0A0J9YX94 578 aa15.31■□□□□ 0.04
LDLR-201ENST00000252444 CDK8P49336 464 aa15.31■□□□□ 0.04
LDLR-201ENST00000252444 CLUL1Q15846 466 aa15.31■□□□□ 0.04
LDLR-201ENST00000252444 EAPPQ56P03 285 aaPredicted RBP15.31■□□□□ 0.04
LDLR-201ENST00000252444 ARHGEF16Q5VV41 709 aa15.31■□□□□ 0.04
LDLR-201ENST00000252444 M0QZ92 97 aa15.31■□□□□ 0.04
LDLR-201ENST00000252444 KCTD17Q8N5Z5 321 aa15.31■□□□□ 0.04
LDLR-201ENST00000252444 TSGA10Q9BZW7 698 aa15.31■□□□□ 0.04
LDLR-201ENST00000252444 CAMTA1Q9Y6Y1 1673 aa15.31■□□□□ 0.04
LDLR-201ENST00000252444 MAP9Q49MG5 647 aa15.31■□□□□ 0.04
LDLR-201ENST00000252444 FAM47AQ5JRC9 791 aa15.31■□□□□ 0.04
LDLR-201ENST00000252444 CABP7Q86V35 215 aa15.31■□□□□ 0.04
LDLR-201ENST00000252444 FAM84BQ96KN1 310 aaPredicted RBP15.31■□□□□ 0.04
LDLR-201ENST00000252444 POLR3EQ9NVU0 708 aa15.31■□□□□ 0.04
LDLR-201ENST00000252444 RTEL1Q9NZ71 1219 aa15.31■□□□□ 0.04
LDLR-201ENST00000252444 CMA1P23946 247 aa15.31■□□□□ 0.04
LDLR-201ENST00000252444 RNF216Q9NWF9 866 aaPredicted RBP15.31■□□□□ 0.04
LDLR-201ENST00000252444 EIF3JO75822 258 aaKnown RBP15.3■□□□□ 0.04
LDLR-201ENST00000252444 CCND2P30279 289 aa15.3■□□□□ 0.04
LDLR-201ENST00000252444 UBASH3AP57075 661 aa15.3■□□□□ 0.04
LDLR-201ENST00000252444 KCTD2Q14681 263 aa15.3■□□□□ 0.04
LDLR-201ENST00000252444 ARL6IP4Q66PJ3 421 aaKnown RBP15.3■□□□□ 0.04
LDLR-201ENST00000252444 CNGA4Q8IV77 575 aa15.3■□□□□ 0.04
LDLR-201ENST00000252444 LARP6Q9BRS8 491 aaKnown RBP15.3■□□□□ 0.04
LDLR-201ENST00000252444 GAP43P17677 238 aa15.3■□□□□ 0.04
LDLR-201ENST00000252444 ZNF174Q15697 407 aa15.3■□□□□ 0.04
LDLR-201ENST00000252444 C2orf69Q8N8R5 385 aa15.3■□□□□ 0.04
LDLR-201ENST00000252444 SPC24Q8NBT2 197 aa15.3■□□□□ 0.04
LDLR-201ENST00000252444 FBXO18Q8NFZ0 1043 aa15.3■□□□□ 0.04
LDLR-201ENST00000252444 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.3■□□□□ 0.042e-6■■■■■ 85.6
LDLR-201ENST00000252444 NRBP2Q9NSY0 501 aa15.3■□□□□ 0.04
LDLR-201ENST00000252444 STK17AQ9UEE5 414 aa15.3■□□□□ 0.04
LDLR-201ENST00000252444 MRC1P22897 1456 aa15.3■□□□□ 0.04
LDLR-201ENST00000252444 VWA3AA6NCI4 1184 aa15.3■□□□□ 0.04
LDLR-201ENST00000252444 CYP2E1P05181 493 aaPredicted RBP15.3■□□□□ 0.04
LDLR-201ENST00000252444 MARCKSP29966 332 aaPredicted RBP15.3■□□□□ 0.04
LDLR-201ENST00000252444 NLRP12P59046 1061 aa15.3■□□□□ 0.04
LDLR-201ENST00000252444 TUBB2AQ13885 445 aa15.3■□□□□ 0.04
LDLR-201ENST00000252444 PPP2R5AQ15172 486 aa15.3■□□□□ 0.04
LDLR-201ENST00000252444 TCERG1LQ5VWI1 586 aa15.3■□□□□ 0.04
LDLR-201ENST00000252444 NEK9Q8TD19 979 aa15.3■□□□□ 0.04
LDLR-201ENST00000252444 SNX29Q8TEQ0 813 aa15.3■□□□□ 0.04
LDLR-201ENST00000252444 TUBB2BQ9BVA1 445 aa15.3■□□□□ 0.04
LDLR-201ENST00000252444 GAS7O60861 476 aa15.3■□□□□ 0.04
LDLR-201ENST00000252444 C15orf52Q6ZUT6 534 aaKnown RBP15.3■□□□□ 0.04
LDLR-201ENST00000252444 C21orf2O43822 256 aa15.3■□□□□ 0.04
LDLR-201ENST00000252444 RBM46Q8TBY0 533 aaKnown RBP15.3■□□□□ 0.04
LDLR-201ENST00000252444 CCPG1Q9ULG6 757 aa15.3■□□□□ 0.04
LDLR-201ENST00000252444 USP17L5A8MUK1 530 aa15.29■□□□□ 0.04
LDLR-201ENST00000252444 MIER3Q7Z3K6 550 aa15.29■□□□□ 0.04
LDLR-201ENST00000252444 KIFC2Q96AC6 838 aa15.29■□□□□ 0.04
LDLR-201ENST00000252444 HOXC10Q9NYD6 342 aa15.29■□□□□ 0.04
LDLR-201ENST00000252444 RFX5P48382 616 aaPredicted RBP15.29■□□□□ 0.04
LDLR-201ENST00000252444 CKAP4Q07065 602 aaKnown RBP15.29■□□□□ 0.04
LDLR-201ENST00000252444 ODR4Q5SWX8 454 aa15.29■□□□□ 0.04
LDLR-201ENST00000252444 HOOK3Q86VS8 718 aa15.29■□□□□ 0.04
LDLR-201ENST00000252444 KIF18AQ8NI77 898 aa15.29■□□□□ 0.04
LDLR-201ENST00000252444 PUS7LQ9H0K6 701 aaKnown RBP15.29■□□□□ 0.04
LDLR-201ENST00000252444 CEP83Q9Y592 693 aa15.29■□□□□ 0.04
LDLR-201ENST00000252444 PHACTR2O75167 634 aa15.29■□□□□ 0.04
LDLR-201ENST00000252444 PAFAH1B1P43034 410 aa15.29■□□□□ 0.04
LDLR-201ENST00000252444 PPP1R2P3Q6NXS1 205 aa15.29■□□□□ 0.04
LDLR-201ENST00000252444 KIFAP3Q92845 792 aa15.29■□□□□ 0.04
LDLR-201ENST00000252444 PCDHB13Q9Y5F0 798 aa15.29■□□□□ 0.04
LDLR-201ENST00000252444 CD2APQ9Y5K6 639 aa15.29■□□□□ 0.04
LDLR-201ENST00000252444 LRRC37A3O60309 1634 aa15.29■□□□□ 0.04
LDLR-201ENST00000252444 AFMP43652 599 aa15.29■□□□□ 0.04
LDLR-201ENST00000252444 ANO6Q4KMQ2 910 aa15.29■□□□□ 0.04
LDLR-201ENST00000252444 ATP6V0A1Q93050 837 aa15.29■□□□□ 0.04
LDLR-201ENST00000252444 SPAG5Q96R06 1193 aa15.29■□□□□ 0.04
LDLR-201ENST00000252444 IMPACTQ9P2X3 320 aa15.29■□□□□ 0.04
LDLR-201ENST00000252444 ATF5Q9Y2D1 282 aaPredicted RBP15.29■□□□□ 0.04
LDLR-201ENST00000252444 TMEM232C9JQI7 657 aa15.28■□□□□ 0.04
LDLR-201ENST00000252444 CETN3O15182 167 aa15.28■□□□□ 0.04
LDLR-201ENST00000252444 NEK11Q8NG66 645 aa15.28■□□□□ 0.04
LDLR-201ENST00000252444 TDRD7Q8NHU6 1098 aaKnown RBP15.28■□□□□ 0.04
LDLR-201ENST00000252444 FLOT1O75955 427 aa15.28■□□□□ 0.04
LDLR-201ENST00000252444 SEC24BO95487 1268 aa15.28■□□□□ 0.04
LDLR-201ENST00000252444 PPP4CP60510 307 aa15.28■□□□□ 0.04
LDLR-201ENST00000252444 PDE4DQ08499 809 aa15.28■□□□□ 0.04
LDLR-201ENST00000252444 GRM4Q14833 912 aa15.28■□□□□ 0.04
LDLR-201ENST00000252444 PTPN14Q15678 1187 aa15.28■□□□□ 0.04
LDLR-201ENST00000252444 TPCN1Q9ULQ1 816 aa15.28■□□□□ 0.04
LDLR-201ENST00000252444 ROBO1Q9Y6N7 1651 aa15.28■□□□□ 0.04
LDLR-201ENST00000252444 FAM182BQ5T319 152 aa15.28■□□□□ 0.04
LDLR-201ENST00000252444 SGMS1Q86VZ5 419 aa15.28■□□□□ 0.04
LDLR-201ENST00000252444 UBN2Q6ZU65 1347 aa15.28■□□□□ 0.04
LDLR-201ENST00000252444 GOLGA6L10A6NI86 522 aa15.28■□□□□ 0.04
LDLR-201ENST00000252444 TDRD12Q587J7 1177 aaKnown RBP15.28■□□□□ 0.04
LDLR-201ENST00000252444 GADL1Q6ZQY3 521 aa15.28■□□□□ 0.04
LDLR-201ENST00000252444 FASTKD5Q7L8L6 764 aaKnown RBP15.28■□□□□ 0.04
LDLR-201ENST00000252444 LPAR1Q92633 364 aa15.28■□□□□ 0.04
LDLR-201ENST00000252444 EDC3Q96F86 508 aaKnown RBP15.28■□□□□ 0.04
LDLR-201ENST00000252444 DRC1Q96MC2 740 aa15.28■□□□□ 0.04
LDLR-201ENST00000252444 C19orf81C9J6K1 198 aa15.27■□□□□ 0.04
LDLR-201ENST00000252444 NEDD1Q8NHV4 660 aa15.27■□□□□ 0.04
LDLR-201ENST00000252444 TFDP1Q14186 410 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms