RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 SRP68Q9UHB9 627 aaKnown RBP12.14□□□□□ -0.47
USP28-201ENST00000003302 TIAM2Q8IVF5 1701 aa12.14□□□□□ -0.47
USP28-201ENST00000003302 RASSF10A6NK89 507 aa12.14□□□□□ -0.47
USP28-201ENST00000003302 AKR1B15C9JRZ8 316 aaPredicted RBP12.14□□□□□ -0.47
USP28-201ENST00000003302 IL6STP40189 918 aaPredicted RBP12.14□□□□□ -0.47
USP28-201ENST00000003302 SAFBQ15424 915 aaKnown RBP eCLIP12.14□□□□□ -0.47
USP28-201ENST00000003302 NUTM2AQ8IVF1 878 aaPredicted RBP12.14□□□□□ -0.47
USP28-201ENST00000003302 KRT23Q9C075 422 aa12.14□□□□□ -0.47
USP28-201ENST00000003302 AGPAT5Q9NUQ2 364 aa12.14□□□□□ -0.47
USP28-201ENST00000003302 SMC1AQ14683 1233 aaKnown RBP12.14□□□□□ -0.47
USP28-201ENST00000003302 DIXDC1Q155Q3 683 aa12.14□□□□□ -0.47
USP28-201ENST00000003302 MLKLQ8NB16 471 aa12.14□□□□□ -0.47
USP28-201ENST00000003302 SMARCAL1Q9NZC9 954 aa12.14□□□□□ -0.47
USP28-201ENST00000003302 ZNF185O15231 689 aa12.13□□□□□ -0.47
USP28-201ENST00000003302 MECOMQ03112 1051 aa12.13□□□□□ -0.47
USP28-201ENST00000003302 BMS1Q14692 1282 aaKnown RBP12.13□□□□□ -0.47
USP28-201ENST00000003302 SMCR8Q8TEV9 937 aaPredicted RBP12.13□□□□□ -0.47
USP28-201ENST00000003302 DCCP43146 1447 aa12.13□□□□□ -0.47
USP28-201ENST00000003302 PNPLA7Q6ZV29 1317 aa12.13□□□□□ -0.47
USP28-201ENST00000003302 PLEKP08567 350 aaPredicted RBP12.13□□□□□ -0.47
USP28-201ENST00000003302 IRX5P78411 483 aaPredicted RBP12.13□□□□□ -0.47
USP28-201ENST00000003302 LONRF2Q1L5Z9 754 aa12.13□□□□□ -0.47
USP28-201ENST00000003302 PDE11AQ9HCR9 933 aa12.13□□□□□ -0.47
USP28-201ENST00000003302 MINPP1Q9UNW1 487 aa12.13□□□□□ -0.47
USP28-201ENST00000003302 DUOX1Q9NRD9 1551 aa12.13□□□□□ -0.47
USP28-201ENST00000003302 LOC102724428A0A0B4J2F2 783 aa12.13□□□□□ -0.47
USP28-201ENST00000003302 SIK1P57059 783 aa12.13□□□□□ -0.47
USP28-201ENST00000003302 PPARDQ03181 441 aa12.13□□□□□ -0.47
USP28-201ENST00000003302 SKIDA1Q1XH10 827 aa12.13□□□□□ -0.47
USP28-201ENST00000003302 TTC38Q5R3I4 469 aa12.13□□□□□ -0.47
USP28-201ENST00000003302 GLIS3Q8NEA6 775 aa12.13□□□□□ -0.47
USP28-201ENST00000003302 LACRTQ9GZZ8 138 aa12.13□□□□□ -0.47
USP28-201ENST00000003302 MYBL2P10244 700 aa12.13□□□□□ -0.47
USP28-201ENST00000003302 ATP2B2Q01814 1243 aa12.13□□□□□ -0.47
USP28-201ENST00000003302 DHX8Q14562 1220 aaKnown RBP12.13□□□□□ -0.47
USP28-201ENST00000003302 RRAGBQ5VZM2 374 aa12.13□□□□□ -0.47
USP28-201ENST00000003302 CLEC10AQ8IUN9 316 aa12.13□□□□□ -0.47
USP28-201ENST00000003302 ABCB6Q9NP58 842 aa12.13□□□□□ -0.47
USP28-201ENST00000003302 TTC26A0AVF1 554 aa12.12□□□□□ -0.47
USP28-201ENST00000003302 CBFA2T2O43439 604 aa12.12□□□□□ -0.47
USP28-201ENST00000003302 SPATA1Q5VX52 437 aa12.12□□□□□ -0.47
USP28-201ENST00000003302 WDR59Q6PJI9 974 aa12.12□□□□□ -0.47
USP28-201ENST00000003302 DOT1LQ8TEK3 1739 aa12.12□□□□□ -0.47
USP28-201ENST00000003302 KDM4FA0A1W2PPD8 638 aa12.12□□□□□ -0.47
USP28-201ENST00000003302 ERICH2A1L162 156 aa12.12□□□□□ -0.47
USP28-201ENST00000003302 TRIM66O15016 1216 aa12.12□□□□□ -0.47
USP28-201ENST00000003302 TMTC3Q6ZXV5 915 aa12.12□□□□□ -0.47
USP28-201ENST00000003302 C4orf32Q8N8J7 132 aa12.12□□□□□ -0.47
USP28-201ENST00000003302 DCP1AQ9NPI6 582 aaPredicted RBP12.12□□□□□ -0.47
USP28-201ENST00000003302 EHD2Q9NZN4 543 aa12.12□□□□□ -0.47
USP28-201ENST00000003302 ARAP2Q8WZ64 1704 aa12.12□□□□□ -0.47
USP28-201ENST00000003302 DNAH12Q6ZR08 3092 aa12.12□□□□□ -0.47
USP28-201ENST00000003302 PLCH1Q4KWH8 1693 aa12.12□□□□□ -0.47
USP28-201ENST00000003302 EPHB6O15197 1021 aa12.12□□□□□ -0.47
USP28-201ENST00000003302 KRT2P35908 639 aa12.12□□□□□ -0.47
USP28-201ENST00000003302 CYP27A1Q02318 531 aa12.12□□□□□ -0.47
USP28-201ENST00000003302 NSUN4Q96CB9 384 aaKnown RBP12.12□□□□□ -0.47
USP28-201ENST00000003302 KRT26Q7Z3Y9 468 aa12.11□□□□□ -0.47
USP28-201ENST00000003302 RNF26Q9BY78 433 aaPredicted RBP12.11□□□□□ -0.47
USP28-201ENST00000003302 CNNM2Q9H8M5 875 aa12.11□□□□□ -0.47
USP28-201ENST00000003302 ABHD10Q9NUJ1 306 aa12.11□□□□□ -0.47
USP28-201ENST00000003302 TMEM51Q9NW97 253 aa12.11□□□□□ -0.47
USP28-201ENST00000003302 LRRIQ3A6PVS8 624 aaPredicted RBP12.11□□□□□ -0.47
USP28-201ENST00000003302 KIF2AO00139 706 aaPredicted RBP12.11□□□□□ -0.47
USP28-201ENST00000003302 EXOC5O00471 708 aa12.11□□□□□ -0.47
USP28-201ENST00000003302 KANSL2Q9H9L4 492 aa12.11□□□□□ -0.47
USP28-201ENST00000003302 ZNF804BA4D1E1 1349 aa12.11□□□□□ -0.47
USP28-201ENST00000003302 NID2Q14112 1375 aa12.11□□□□□ -0.47
USP28-201ENST00000003302 CHMP4BP1P59074 171 aa12.11□□□□□ -0.47
USP28-201ENST00000003302 APBA1Q02410 837 aa12.11□□□□□ -0.47
USP28-201ENST00000003302 BEND6Q5SZJ8 279 aaPredicted RBP12.11□□□□□ -0.47
USP28-201ENST00000003302 TBC1D9BQ66K14 1250 aa12.11□□□□□ -0.47
USP28-201ENST00000003302 CCDC87Q9NVE4 849 aa12.11□□□□□ -0.47
USP28-201ENST00000003302 PES1O00541 588 aaKnown RBP12.11□□□□□ -0.47
USP28-201ENST00000003302 N4BP3O15049 544 aa12.11□□□□□ -0.47
USP28-201ENST00000003302 FCER1AP12319 257 aa12.11□□□□□ -0.47
USP28-201ENST00000003302 ATP2C1P98194 919 aaPredicted RBP12.11□□□□□ -0.47
USP28-201ENST00000003302 CCDC155Q8N6L0 562 aa12.11□□□□□ -0.47
USP28-201ENST00000003302 ESR2Q92731 530 aa12.11□□□□□ -0.47
USP28-201ENST00000003302 CAPZA3Q96KX2 299 aa12.11□□□□□ -0.47
USP28-201ENST00000003302 PSMB7Q99436 277 aa12.11□□□□□ -0.47
USP28-201ENST00000003302 GUCA1BQ9UMX6 200 aa12.11□□□□□ -0.47
USP28-201ENST00000003302 PDE2AO00408 941 aaPredicted RBP12.1□□□□□ -0.47
USP28-201ENST00000003302 ZSCAN12O43309 604 aa12.1□□□□□ -0.47
USP28-201ENST00000003302 INF2Q27J81 1249 aa12.1□□□□□ -0.47
USP28-201ENST00000003302 NACAP1Q9BZK3 213 aa12.1□□□□□ -0.47
USP28-201ENST00000003302 PHLPP1O60346 1717 aa12.1□□□□□ -0.47
USP28-201ENST00000003302 CCDC175P0C221 793 aa12.1□□□□□ -0.47
USP28-201ENST00000003302 IGHMBP2P38935 993 aaKnown RBP12.1□□□□□ -0.47
USP28-201ENST00000003302 ZNF579Q8NAF0 562 aaKnown RBP12.1□□□□□ -0.47
USP28-201ENST00000003302 NELFBQ8WX92 580 aa12.1□□□□□ -0.47
USP28-201ENST00000003302 A0A1B0GUL6 1792 aa12.1□□□□□ -0.47
USP28-201ENST00000003302 ERVV-1B6SEH8 477 aa12.1□□□□□ -0.47
USP28-201ENST00000003302 ATP1A1P05023 1023 aaKnown RBP12.1□□□□□ -0.47
USP28-201ENST00000003302 KRT9P35527 623 aa12.1□□□□□ -0.47
USP28-201ENST00000003302 SART3Q15020 963 aaKnown RBP12.1□□□□□ -0.47
USP28-201ENST00000003302 EZH2Q15910 746 aaKnown RBP12.1□□□□□ -0.47
USP28-201ENST00000003302 DNAAF5Q86Y56 855 aa12.1□□□□□ -0.47
USP28-201ENST00000003302 LINC00116Q8NCU8 138 aa12.1□□□□□ -0.47
USP28-201ENST00000003302 RABEP2Q9H5N1 569 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms