RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 ZNF174Q15697 407 aa14.52□□□□□ -0.09
LINC00540-203ENST00000631321 E2F4Q16254 413 aa14.52□□□□□ -0.09
LINC00540-203ENST00000631321 BARGINQ6ZT62 677 aa14.52□□□□□ -0.09
LINC00540-203ENST00000631321 CELF1Q92879 486 aaKnown RBP14.52□□□□□ -0.09
LINC00540-203ENST00000631321 PYM1Q9BRP8 204 aaKnown RBP14.52□□□□□ -0.09
LINC00540-203ENST00000631321 DCP1AQ9NPI6 582 aaPredicted RBP14.52□□□□□ -0.09
LINC00540-203ENST00000631321 ATP8A2Q9NTI2 1148 aa14.52□□□□□ -0.09
LINC00540-203ENST00000631321 ZNF831Q5JPB2 1677 aa14.52□□□□□ -0.09
LINC00540-203ENST00000631321 URI1O94763 535 aaPredicted RBP14.51□□□□□ -0.09
LINC00540-203ENST00000631321 AFMP43652 599 aa14.51□□□□□ -0.09
LINC00540-203ENST00000631321 NT5C2P49902 561 aa14.51□□□□□ -0.09
LINC00540-203ENST00000631321 ARHGAP29Q52LW3 1261 aa14.51□□□□□ -0.09
LINC00540-203ENST00000631321 NOM1Q5C9Z4 860 aaKnown RBP14.51□□□□□ -0.09
LINC00540-203ENST00000631321 CTCFLQ8NI51 663 aaPredicted RBP14.51□□□□□ -0.09
LINC00540-203ENST00000631321 CTAGE1Q96RT6 745 aa14.51□□□□□ -0.09
LINC00540-203ENST00000631321 NAA15Q9BXJ9 866 aaKnown RBP14.51□□□□□ -0.09
LINC00540-203ENST00000631321 CRNKL1Q9BZJ0 848 aaKnown RBP14.51□□□□□ -0.09
LINC00540-203ENST00000631321 KIF20AO95235 890 aa14.51□□□□□ -0.09
LINC00540-203ENST00000631321 TPM1P09493 284 aa14.51□□□□□ -0.09
LINC00540-203ENST00000631321 SCG2P13521 617 aa14.51□□□□□ -0.09
LINC00540-203ENST00000631321 MAP3K9P80192 1104 aa14.51□□□□□ -0.09
LINC00540-203ENST00000631321 PTGDRQ13258 359 aa14.51□□□□□ -0.09
LINC00540-203ENST00000631321 PFKFB3Q16875 520 aaPredicted RBP14.51□□□□□ -0.09
LINC00540-203ENST00000631321 LINC00116Q8NCU8 138 aa14.51□□□□□ -0.09
LINC00540-203ENST00000631321 UBXN4Q92575 508 aa14.51□□□□□ -0.09
LINC00540-203ENST00000631321 MYH2Q9UKX2 1941 aa14.5□□□□□ -0.09
LINC00540-203ENST00000631321 TEX33O43247 280 aa14.5□□□□□ -0.09
LINC00540-203ENST00000631321 CASQ1P31415 396 aa14.5□□□□□ -0.09
LINC00540-203ENST00000631321 CLCN6P51797 869 aa14.5□□□□□ -0.09
LINC00540-203ENST00000631321 MNS1Q8NEH6 495 aa14.5□□□□□ -0.09
LINC00540-203ENST00000631321 KIFC2Q96AC6 838 aa14.5□□□□□ -0.09
LINC00540-203ENST00000631321 WDR24Q96S15 920 aa14.5□□□□□ -0.09
LINC00540-203ENST00000631321 ARPP21Q9UBL0 812 aaPredicted RBP14.5□□□□□ -0.09
LINC00540-203ENST00000631321 NPHP1O15259 732 aa14.5□□□□□ -0.09
LINC00540-203ENST00000631321 ADAMTS2O95450 1211 aa14.5□□□□□ -0.09
LINC00540-203ENST00000631321 FECHP22830 423 aa14.5□□□□□ -0.09
LINC00540-203ENST00000631321 BMS1Q14692 1282 aaKnown RBP14.5□□□□□ -0.09
LINC00540-203ENST00000631321 PDXDC2PQ6P474 469 aa14.5□□□□□ -0.09
LINC00540-203ENST00000631321 IQUBQ8NA54 791 aa14.5□□□□□ -0.09
LINC00540-203ENST00000631321 XDHP47989 1333 aa14.5□□□□□ -0.09
LINC00540-203ENST00000631321 KLRK1P26718 216 aa14.49□□□□□ -0.09
LINC00540-203ENST00000631321 CASP1P29466 404 aa14.49□□□□□ -0.09
LINC00540-203ENST00000631321 GNG11P61952 73 aa14.49□□□□□ -0.09
LINC00540-203ENST00000631321 RPS8P62241 208 aaKnown RBP14.49□□□□□ -0.09
LINC00540-203ENST00000631321 CARD6Q9BX69 1037 aa14.49□□□□□ -0.09
LINC00540-203ENST00000631321 MRFAP1Q9Y605 127 aa14.49□□□□□ -0.09
LINC00540-203ENST00000631321 BAZ2AQ9UIF9 1905 aaKnown RBP14.49□□□□□ -0.09
LINC00540-203ENST00000631321 ITIH6Q6UXX5 1313 aa14.49□□□□□ -0.09
LINC00540-203ENST00000631321 CNTNAP4Q9C0A0 1308 aa14.49□□□□□ -0.09
LINC00540-203ENST00000631321 LRRC10BA6NIK2 292 aa14.49□□□□□ -0.09
LINC00540-203ENST00000631321 ZRANB2O95218 330 aaKnown RBP eCLIP14.49□□□□□ -0.09
LINC00540-203ENST00000631321 HIBADHP31937 336 aaKnown RBP14.49□□□□□ -0.09
LINC00540-203ENST00000631321 EVX2Q03828 476 aa14.49□□□□□ -0.09
LINC00540-203ENST00000631321 IGSF22Q8N9C0 903 aa14.49□□□□□ -0.09
LINC00540-203ENST00000631321 ANKRD2Q9GZV1 360 aa14.49□□□□□ -0.09
LINC00540-203ENST00000631321 FHOD1Q9Y613 1164 aa14.49□□□□□ -0.09
LINC00540-203ENST00000631321 KCNQ2O43526 872 aa14.48□□□□□ -0.09
LINC00540-203ENST00000631321 GTPBP6O43824 516 aaPredicted RBP14.48□□□□□ -0.09
LINC00540-203ENST00000631321 NMT2O60551 498 aa14.48□□□□□ -0.09
LINC00540-203ENST00000631321 IGSF3O75054 1194 aa14.48□□□□□ -0.09
LINC00540-203ENST00000631321 STX17P56962 302 aa14.48□□□□□ -0.09
LINC00540-203ENST00000631321 NLRP5P59047 1200 aa14.48□□□□□ -0.09
LINC00540-203ENST00000631321 RBL2Q08999 1139 aa14.48□□□□□ -0.09
LINC00540-203ENST00000631321 IL17AQ16552 155 aa14.48□□□□□ -0.09
LINC00540-203ENST00000631321 FILIP1LQ4L180 1135 aa14.48□□□□□ -0.09
LINC00540-203ENST00000631321 ARL6IP4Q66PJ3 421 aaKnown RBP14.48□□□□□ -0.09
LINC00540-203ENST00000631321 RCSD1Q6JBY9 416 aa14.48□□□□□ -0.09
LINC00540-203ENST00000631321 KLHL10Q6JEL2 608 aa14.48□□□□□ -0.09
LINC00540-203ENST00000631321 PPFIBP1Q86W92 1011 aa14.48□□□□□ -0.09
LINC00540-203ENST00000631321 ANKS1AQ92625 1134 aa14.48□□□□□ -0.09
LINC00540-203ENST00000631321 CCDC51Q96ER9 411 aa14.48□□□□□ -0.09
LINC00540-203ENST00000631321 SH3GLB2Q9NR46 395 aa14.48□□□□□ -0.09
LINC00540-203ENST00000631321 ARGLU1Q9NWB6 273 aaPredicted RBP14.48□□□□□ -0.09
LINC00540-203ENST00000631321 LIMA1Q9UHB6 759 aaKnown RBP14.48□□□□□ -0.09
LINC00540-203ENST00000631321 MFAP3LO75121 409 aa14.47□□□□□ -0.09
LINC00540-203ENST00000631321 CCDC175P0C221 793 aa14.47□□□□□ -0.09
LINC00540-203ENST00000631321 CALML3P27482 149 aa14.47□□□□□ -0.09
LINC00540-203ENST00000631321 KIF5BP33176 963 aa14.47□□□□□ -0.09
LINC00540-203ENST00000631321 FAM47AQ5JRC9 791 aa14.47□□□□□ -0.09
LINC00540-203ENST00000631321 TBC1D9BQ66K14 1250 aa14.47□□□□□ -0.09
LINC00540-203ENST00000631321 PIK3AP1Q6ZUJ8 805 aa14.47□□□□□ -0.09
LINC00540-203ENST00000631321 C4orf32Q8N8J7 132 aa14.47□□□□□ -0.09
LINC00540-203ENST00000631321 MTRQ99707 1265 aa14.47□□□□□ -0.09
LINC00540-203ENST00000631321 NYXQ9GZU5 481 aa14.47□□□□□ -0.09
LINC00540-203ENST00000631321 RWDD2AQ9UIY3 292 aa14.47□□□□□ -0.09
LINC00540-203ENST00000631321 ADGRG1Q9Y653 693 aa14.47□□□□□ -0.09
LINC00540-203ENST00000631321 IRS2Q9Y4H2 1338 aa14.47□□□□□ -0.09
LINC00540-203ENST00000631321 CYP2D6P10635 497 aa14.47□□□□□ -0.09
LINC00540-203ENST00000631321 SMYD4Q8IYR2 804 aaPredicted RBP14.47□□□□□ -0.09
LINC00540-203ENST00000631321 MRPL44Q9H9J2 332 aaKnown RBP14.47□□□□□ -0.09
LINC00540-203ENST00000631321 LAMB1P07942 1786 aa14.47□□□□□ -0.09
LINC00540-203ENST00000631321 KIAA1551Q9HCM1 1747 aa14.46□□□□□ -0.09
LINC00540-203ENST00000631321 PRDX5P30044 214 aa14.46□□□□□ -0.09
LINC00540-203ENST00000631321 LONP1P36776 959 aaKnown RBP14.46□□□□□ -0.09
LINC00540-203ENST00000631321 FAM193AP78312 1265 aa14.46□□□□□ -0.09
LINC00540-203ENST00000631321 MTF1Q14872 753 aa14.46□□□□□ -0.09
LINC00540-203ENST00000631321 RAD9BQ6WBX8 426 aa14.46□□□□□ -0.09
LINC00540-203ENST00000631321 RSRC2Q7L4I2 434 aaKnown RBP14.46□□□□□ -0.09
LINC00540-203ENST00000631321 DESI2Q9BSY9 194 aa14.46□□□□□ -0.09
LINC00540-203ENST00000631321 SOWAHDA6NJG2 315 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms