RNA–Protein interactions for RNA: ENST00000620787.4

PDLIM3-212, Transcript of PDZ and LIM domain 3, humanhuman

TSL 4 BASIC

Gene PDLIM3, Length 2,352 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-212ENST00000620787 VPS54Q9P1Q0 977 aa22.17■■□□□ 1.14
PDLIM3-212ENST00000620787 LIMA1Q9UHB6 759 aaKnown RBP22.17■■□□□ 1.14
PDLIM3-212ENST00000620787 PNPLA7Q6ZV29 1317 aa22.17■■□□□ 1.14
PDLIM3-212ENST00000620787 RNF225M0QZC1 329 aaPredicted RBP22.17■■□□□ 1.14
PDLIM3-212ENST00000620787 PKN1Q16512 942 aa22.17■■□□□ 1.14
PDLIM3-212ENST00000620787 WWC2Q6AWC2 1192 aa22.17■■□□□ 1.14
PDLIM3-212ENST00000620787 FERMT2Q96AC1 680 aa22.17■■□□□ 1.14
PDLIM3-212ENST00000620787 PHF20Q9BVI0 1012 aa22.17■■□□□ 1.14
PDLIM3-212ENST00000620787 SLC4A4Q9Y6R1 1079 aa22.17■■□□□ 1.14
PDLIM3-212ENST00000620787 CTAGE15A4D2H0 777 aa22.16■■□□□ 1.14
PDLIM3-212ENST00000620787 CTAGE8P0CG41 777 aa22.16■■□□□ 1.14
PDLIM3-212ENST00000620787 AMPD2Q01433 879 aa22.16■■□□□ 1.14
PDLIM3-212ENST00000620787 CTAGE6Q86UF2 777 aa22.16■■□□□ 1.14
PDLIM3-212ENST00000620787 CTAGE4Q8IX94 777 aa22.16■■□□□ 1.14
PDLIM3-212ENST00000620787 NACAP1Q9BZK3 213 aa22.16■■□□□ 1.14
PDLIM3-212ENST00000620787 MYO1AQ9UBC5 1043 aa22.16■■□□□ 1.14
PDLIM3-212ENST00000620787 FAN1Q9Y2M0 1017 aa22.16■■□□□ 1.14
PDLIM3-212ENST00000620787 COBLO75128 1261 aa22.16■■□□□ 1.14
PDLIM3-212ENST00000620787 IL2RBP14784 551 aa22.16■■□□□ 1.14
PDLIM3-212ENST00000620787 CDC25AP30304 524 aa22.16■■□□□ 1.14
PDLIM3-212ENST00000620787 KRT2P35908 639 aa22.16■■□□□ 1.14
PDLIM3-212ENST00000620787 PIP4K2BP78356 416 aa22.16■■□□□ 1.14
PDLIM3-212ENST00000620787 CASP8Q14790 479 aa22.16■■□□□ 1.14
PDLIM3-212ENST00000620787 COL5A2P05997 1499 aaPredicted RBP22.15■■□□□ 1.14
PDLIM3-212ENST00000620787 MROH5Q6ZUA9 1318 aa22.15■■□□□ 1.14
PDLIM3-212ENST00000620787 LRRC10BA6NIK2 292 aa22.15■■□□□ 1.14
PDLIM3-212ENST00000620787 MYO1CO00159 1063 aa22.15■■□□□ 1.14
PDLIM3-212ENST00000620787 GNAT2P19087 354 aa22.15■■□□□ 1.14
PDLIM3-212ENST00000620787 SEC23AQ15436 765 aa22.15■■□□□ 1.14
PDLIM3-212ENST00000620787 NOA1Q8NC60 698 aaKnown RBP22.15■■□□□ 1.14
PDLIM3-212ENST00000620787 TRIM34Q9BYJ4 488 aa22.15■■□□□ 1.14
PDLIM3-212ENST00000620787 TMOD3Q9NYL9 352 aa22.15■■□□□ 1.14
PDLIM3-212ENST00000620787 NHSL1Q5SYE7 1610 aa22.15■■□□□ 1.14
PDLIM3-212ENST00000620787 XDHP47989 1333 aa22.15■■□□□ 1.14
PDLIM3-212ENST00000620787 PDE8AO60658 829 aa22.14■■□□□ 1.14
PDLIM3-212ENST00000620787 CYP26C1Q6V0L0 522 aa22.14■■□□□ 1.14
PDLIM3-212ENST00000620787 ZBTB9Q96C00 473 aa22.14■■□□□ 1.14
PDLIM3-212ENST00000620787 GBP3Q9H0R5 595 aa22.14■■□□□ 1.14
PDLIM3-212ENST00000620787 DCCP43146 1447 aa22.14■■□□□ 1.14
PDLIM3-212ENST00000620787 SRLQ86TD4 932 aa22.14■■□□□ 1.13
PDLIM3-212ENST00000620787 STAMQ92783 540 aa22.14■■□□□ 1.13
PDLIM3-212ENST00000620787 TRMT112Q9UI30 125 aaKnown RBP22.14■■□□□ 1.13
PDLIM3-212ENST00000620787 ASAP1Q9ULH1 1129 aa22.14■■□□□ 1.13
PDLIM3-212ENST00000620787 N4BP3O15049 544 aa22.13■■□□□ 1.13
PDLIM3-212ENST00000620787 SLC5A1P13866 664 aa22.13■■□□□ 1.13
PDLIM3-212ENST00000620787 FUT2Q10981 343 aa22.13■■□□□ 1.13
PDLIM3-212ENST00000620787 UBAC1Q9BSL1 405 aa22.13■■□□□ 1.13
PDLIM3-212ENST00000620787 RNF41Q9H4P4 317 aaPredicted RBP22.13■■□□□ 1.13
PDLIM3-212ENST00000620787 RTL9Q8NET4 1388 aa22.13■■□□□ 1.13
PDLIM3-212ENST00000620787 COL22A1Q8NFW1 1626 aaPredicted RBP22.13■■□□□ 1.13
PDLIM3-212ENST00000620787 SNAP23O00161 211 aa22.13■■□□□ 1.13
PDLIM3-212ENST00000620787 PRDM1O75626 825 aa22.13■■□□□ 1.13
PDLIM3-212ENST00000620787 BMP15O95972 392 aa22.13■■□□□ 1.13
PDLIM3-212ENST00000620787 XBP1P17861 261 aa22.13■■□□□ 1.13
PDLIM3-212ENST00000620787 COPB1P53618 953 aaKnown RBP22.13■■□□□ 1.13
PDLIM3-212ENST00000620787 AKAP17AQ02040 695 aaKnown RBP22.13■■□□□ 1.13
PDLIM3-212ENST00000620787 LEKR1Q6ZMV7 388 aa22.13■■□□□ 1.13
PDLIM3-212ENST00000620787 SLF1Q9BQI6 1058 aa22.13■■□□□ 1.13
PDLIM3-212ENST00000620787 VPS16Q9H269 839 aa22.13■■□□□ 1.13
PDLIM3-212ENST00000620787 MYO6Q9UM54 1294 aa22.13■■□□□ 1.13
PDLIM3-212ENST00000620787 TNKSO95271 1327 aa22.13■■□□□ 1.13
PDLIM3-212ENST00000620787 TRIM66O15016 1216 aa22.12■■□□□ 1.13
PDLIM3-212ENST00000620787 PPARAQ07869 468 aa22.12■■□□□ 1.13
PDLIM3-212ENST00000620787 E2F4Q16254 413 aa22.12■■□□□ 1.13
PDLIM3-212ENST00000620787 NOM1Q5C9Z4 860 aaKnown RBP22.12■■□□□ 1.13
PDLIM3-212ENST00000620787 FAM71BQ8TC56 605 aa22.12■■□□□ 1.13
PDLIM3-212ENST00000620787 TNFRSF25Q93038 417 aa22.12■■□□□ 1.13
PDLIM3-212ENST00000620787 NUP88Q99567 741 aaPredicted RBP22.12■■□□□ 1.13
PDLIM3-212ENST00000620787 RASSF4Q9H2L5 321 aa22.12■■□□□ 1.13
PDLIM3-212ENST00000620787 PRDM11Q9NQV5 511 aa22.12■■□□□ 1.13
PDLIM3-212ENST00000620787 RWDD2AQ9UIY3 292 aa22.12■■□□□ 1.13
PDLIM3-212ENST00000620787 RRP15Q9Y3B9 282 aaKnown RBP22.12■■□□□ 1.13
PDLIM3-212ENST00000620787 STRCP1A6NGW2 1772 aa22.12■■□□□ 1.13
PDLIM3-212ENST00000620787 RPS6KA5O75582 802 aa22.12■■□□□ 1.13
PDLIM3-212ENST00000620787 STARD3NLO95772 234 aa22.12■■□□□ 1.13
PDLIM3-212ENST00000620787 TUBBP07437 444 aa22.12■■□□□ 1.13
PDLIM3-212ENST00000620787 TRIM14Q14142 442 aa22.12■■□□□ 1.13
PDLIM3-212ENST00000620787 ZNF174Q15697 407 aa22.12■■□□□ 1.13
PDLIM3-212ENST00000620787 NCAPH2Q6IBW4 605 aa22.12■■□□□ 1.13
PDLIM3-212ENST00000620787 BLZF1Q9H2G9 400 aa22.12■■□□□ 1.13
PDLIM3-212ENST00000620787 TAB2Q9NYJ8 693 aa22.12■■□□□ 1.13
PDLIM3-212ENST00000620787 DLEC1Q9Y238 1755 aa22.12■■□□□ 1.13
PDLIM3-212ENST00000620787 hCG_1642624A0A1W2PR95 340 aa22.11■■□□□ 1.13
PDLIM3-212ENST00000620787 LRRIQ3A6PVS8 624 aaPredicted RBP22.11■■□□□ 1.13
PDLIM3-212ENST00000620787 PPP2R5BQ15173 497 aa22.11■■□□□ 1.13
PDLIM3-212ENST00000620787 RRAGBQ5VZM2 374 aa22.11■■□□□ 1.13
PDLIM3-212ENST00000620787 WDR93Q6P2C0 686 aa22.11■■□□□ 1.13
PDLIM3-212ENST00000620787 REXO2Q9Y3B8 237 aaKnown RBP22.11■■□□□ 1.13
PDLIM3-212ENST00000620787 PRPF3O43395 683 aaKnown RBP22.11■■□□□ 1.13
PDLIM3-212ENST00000620787 TCP11X2Q5H9J9 407 aa22.11■■□□□ 1.13
PDLIM3-212ENST00000620787 MIGA1Q8NAN2 632 aa22.11■■□□□ 1.13
PDLIM3-212ENST00000620787 DISP2A7MBM2 1401 aa22.1■■□□□ 1.13
PDLIM3-212ENST00000620787 ITGB4P16144 1822 aa22.1■■□□□ 1.13
PDLIM3-212ENST00000620787 IVLP07476 585 aa22.1■■□□□ 1.13
PDLIM3-212ENST00000620787 ATP2C1P98194 919 aaPredicted RBP22.1■■□□□ 1.13
PDLIM3-212ENST00000620787 SPAG1Q07617 926 aa22.1■■□□□ 1.13
PDLIM3-212ENST00000620787 NPY5RQ15761 445 aa22.1■■□□□ 1.13
PDLIM3-212ENST00000620787 TTC38Q5R3I4 469 aa22.1■■□□□ 1.13
PDLIM3-212ENST00000620787 PDXDC2PQ6P474 469 aa22.1■■□□□ 1.13
PDLIM3-212ENST00000620787 C10orf67Q8IYJ2 551 aa22.1■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms