RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 GMCL1P1Q8NEA9 526 aa16.8■□□□□ 0.28
UPF1-211ENST00000600868 OPTNQ96CV9 577 aa16.8■□□□□ 0.28
UPF1-211ENST00000600868 ZNF274Q96GC6 653 aaPredicted RBP16.8■□□□□ 0.28
UPF1-211ENST00000600868 HHIPL1Q96JK4 782 aa16.8■□□□□ 0.28
UPF1-211ENST00000600868 LIMCH1Q9UPQ0 1083 aa16.8■□□□□ 0.28
UPF1-211ENST00000600868 SLC12A7Q9Y666 1083 aa16.8■□□□□ 0.28
UPF1-211ENST00000600868 C19orf81C9J6K1 198 aa16.79■□□□□ 0.28
UPF1-211ENST00000600868 USP17L10C9JJH3 530 aa16.79■□□□□ 0.28
UPF1-211ENST00000600868 CXCL11O14625 94 aa16.79■□□□□ 0.28
UPF1-211ENST00000600868 DDAH1O94760 285 aa16.79■□□□□ 0.28
UPF1-211ENST00000600868 APLP1P51693 650 aa16.79■□□□□ 0.28
UPF1-211ENST00000600868 BACE1P56817 501 aa16.79■□□□□ 0.28
UPF1-211ENST00000600868 TROAPQ12815 778 aa16.79■□□□□ 0.28
UPF1-211ENST00000600868 LRRC47Q8N1G4 583 aaKnown RBP16.79■□□□□ 0.28
UPF1-211ENST00000600868 CNKSR2Q8WXI2 1034 aa16.79■□□□□ 0.28
UPF1-211ENST00000600868 MAP3K14Q99558 947 aa16.79■□□□□ 0.28
UPF1-211ENST00000600868 FEZ1Q99689 392 aa16.79■□□□□ 0.28
UPF1-211ENST00000600868 VCPKMTQ9H867 229 aa16.79■□□□□ 0.28
UPF1-211ENST00000600868 GOPCQ9HD26 462 aa16.79■□□□□ 0.28
UPF1-211ENST00000600868 TPCN1Q9ULQ1 816 aa16.79■□□□□ 0.28
UPF1-211ENST00000600868 F5H6K3 240 aa16.78■□□□□ 0.28
UPF1-211ENST00000600868 CALM1P0DP23 149 aa16.78■□□□□ 0.28
UPF1-211ENST00000600868 CALM2P0DP24 149 aa16.78■□□□□ 0.28
UPF1-211ENST00000600868 CALM3P0DP25 149 aa16.78■□□□□ 0.28
UPF1-211ENST00000600868 USP14P54578 494 aa16.78■□□□□ 0.28
UPF1-211ENST00000600868 KLRC3Q07444 240 aa16.78■□□□□ 0.28
UPF1-211ENST00000600868 OTUD5Q96G74 571 aa16.78■□□□□ 0.28
UPF1-211ENST00000600868 WNK4Q96J92 1243 aa16.78■□□□□ 0.28
UPF1-211ENST00000600868 ZSCAN31Q96LW9 406 aaPredicted RBP16.78■□□□□ 0.28
UPF1-211ENST00000600868 LARP6Q9BRS8 491 aaKnown RBP16.78■□□□□ 0.28
UPF1-211ENST00000600868 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.78■□□□□ 0.28
UPF1-211ENST00000600868 KCNH4Q9UQ05 1017 aa16.78■□□□□ 0.28
UPF1-211ENST00000600868 TRIM75PA6NK02 468 aa16.77■□□□□ 0.28
UPF1-211ENST00000600868 IRF6O14896 467 aa16.77■□□□□ 0.28
UPF1-211ENST00000600868 ZBTB43O43298 467 aa16.77■□□□□ 0.28
UPF1-211ENST00000600868 SNHG28P0DPA3 235 aa16.77■□□□□ 0.28
UPF1-211ENST00000600868 PDIA3P30101 505 aaKnown RBP16.77■□□□□ 0.28
UPF1-211ENST00000600868 GJA5P36382 358 aa16.77■□□□□ 0.28
UPF1-211ENST00000600868 MTMR2Q13614 643 aa16.77■□□□□ 0.28
UPF1-211ENST00000600868 SH3D19Q5HYK7 790 aa16.77■□□□□ 0.28
UPF1-211ENST00000600868 RGMBQ6NW40 437 aa16.77■□□□□ 0.28
UPF1-211ENST00000600868 USP17L2Q6R6M4 530 aa16.77■□□□□ 0.28
UPF1-211ENST00000600868 DCAF4Q8WV16 495 aa16.77■□□□□ 0.28
UPF1-211ENST00000600868 LPAR1Q92633 364 aa16.77■□□□□ 0.28
UPF1-211ENST00000600868 C12orf42Q96LP6 360 aa16.77■□□□□ 0.28
UPF1-211ENST00000600868 SH2B1Q9NRF2 756 aaPredicted RBP16.77■□□□□ 0.28
UPF1-211ENST00000600868 CREBZFQ9NS37 354 aa16.77■□□□□ 0.28
UPF1-211ENST00000600868 ABT1Q9ULW3 272 aaKnown RBP16.77■□□□□ 0.28
UPF1-211ENST00000600868 NID2Q14112 1375 aa16.77■□□□□ 0.27
UPF1-211ENST00000600868 GOLGA8BA8MQT2 603 aa16.76■□□□□ 0.27
UPF1-211ENST00000600868 PFKFB2O60825 505 aa16.76■□□□□ 0.27
UPF1-211ENST00000600868 NDUFB10O96000 172 aa16.76■□□□□ 0.27
UPF1-211ENST00000600868 ZBTB48P10074 688 aaPredicted RBP16.76■□□□□ 0.27
UPF1-211ENST00000600868 PDHBP11177 359 aa16.76■□□□□ 0.27
UPF1-211ENST00000600868 GRM4Q14833 912 aa16.76■□□□□ 0.27
UPF1-211ENST00000600868 PPP2R5BQ15173 497 aa16.76■□□□□ 0.27
UPF1-211ENST00000600868 ME3Q16798 604 aa16.76■□□□□ 0.27
UPF1-211ENST00000600868 SPRYD7Q5W111 196 aa16.76■□□□□ 0.27
UPF1-211ENST00000600868 SLFN13Q68D06 897 aa16.76■□□□□ 0.27
UPF1-211ENST00000600868 NOL8Q76FK4 1167 aaKnown RBP16.76■□□□□ 0.27
UPF1-211ENST00000600868 GMCL1Q96IK5 515 aa16.76■□□□□ 0.27
UPF1-211ENST00000600868 MYL10Q9BUA6 226 aa16.76■□□□□ 0.27
UPF1-211ENST00000600868 EMILIN3Q9NT22 766 aa16.76■□□□□ 0.27
UPF1-211ENST00000600868 NAP1L2Q9ULW6 460 aaPredicted RBP16.76■□□□□ 0.27
UPF1-211ENST00000600868 HPS5Q9UPZ3 1129 aa16.76■□□□□ 0.27
UPF1-211ENST00000600868 A0A0G2JLL6 359 aaPredicted RBP16.75■□□□□ 0.27
UPF1-211ENST00000600868 KIF5BP33176 963 aa16.75■□□□□ 0.27
UPF1-211ENST00000600868 METAP2P50579 478 aaKnown RBP eCLIP16.75■□□□□ 0.27
UPF1-211ENST00000600868 ZNF157P51786 506 aaPredicted RBP16.75■□□□□ 0.27
UPF1-211ENST00000600868 KIAA1755Q5JYT7 1200 aa16.75■□□□□ 0.27
UPF1-211ENST00000600868 PRRT2Q7Z6L0 340 aaPredicted RBP16.75■□□□□ 0.27
UPF1-211ENST00000600868 MICU3Q86XE3 530 aa16.75■□□□□ 0.27
UPF1-211ENST00000600868 RASAL3Q86YV0 1011 aa16.75■□□□□ 0.27
UPF1-211ENST00000600868 FANCBQ8NB91 859 aa16.75■□□□□ 0.27
UPF1-211ENST00000600868 NUP133Q8WUM0 1156 aa16.75■□□□□ 0.27
UPF1-211ENST00000600868 RBM19Q9Y4C8 960 aaKnown RBP16.75■□□□□ 0.27
UPF1-211ENST00000600868 PTPRFP10586 1907 aa16.74■□□□□ 0.27
UPF1-211ENST00000600868 PALM3A6NDB9 673 aaPredicted RBP16.74■□□□□ 0.27
UPF1-211ENST00000600868 GOLGA8AA7E2F4 631 aa16.74■□□□□ 0.27
UPF1-211ENST00000600868 PARP1P09874 1014 aaKnown RBP16.74■□□□□ 0.27
UPF1-211ENST00000600868 SLC1A4P43007 532 aa16.74■□□□□ 0.27
UPF1-211ENST00000600868 GTF2A2P52657 109 aa16.74■□□□□ 0.27
UPF1-211ENST00000600868 HMGCS2P54868 508 aa16.74■□□□□ 0.27
UPF1-211ENST00000600868 ZNF543Q08ER8 600 aa16.74■□□□□ 0.27
UPF1-211ENST00000600868 SNAPC2Q13487 334 aa16.74■□□□□ 0.27
UPF1-211ENST00000600868 ZYXQ15942 572 aaKnown RBP16.74■□□□□ 0.27
UPF1-211ENST00000600868 RTN1Q16799 776 aa16.74■□□□□ 0.27
UPF1-211ENST00000600868 ASPRV1Q53RT3 343 aa16.74■□□□□ 0.27
UPF1-211ENST00000600868 HSCBQ8IWL3 235 aa16.74■□□□□ 0.27
UPF1-211ENST00000600868 CTCFLQ8NI51 663 aaPredicted RBP16.74■□□□□ 0.27
UPF1-211ENST00000600868 CCDC102AQ96A19 550 aa16.74■□□□□ 0.27
UPF1-211ENST00000600868 TMX3Q96JJ7 454 aa16.74■□□□□ 0.27
UPF1-211ENST00000600868 SLKQ9H2G2 1235 aaPredicted RBP16.74■□□□□ 0.27
UPF1-211ENST00000600868 RBM28Q9NW13 759 aaKnown RBP16.74■□□□□ 0.27
UPF1-211ENST00000600868 TMOD4Q9NZQ9 345 aa16.74■□□□□ 0.27
UPF1-211ENST00000600868 MAD2L2Q9UI95 211 aa16.74■□□□□ 0.27
UPF1-211ENST00000600868 CCDC196A0A1B0GTZ2 297 aa16.73■□□□□ 0.27
UPF1-211ENST00000600868 K7ELQ4 463 aaPredicted RBP16.73■□□□□ 0.27
UPF1-211ENST00000600868 WDR46O15213 610 aaKnown RBP16.73■□□□□ 0.27
UPF1-211ENST00000600868 RAD21O60216 631 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms