RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 PARK7Q99497 189 aaKnown RBP16.82■□□□□ 0.28
SHKBP1-217ENST00000598558 ARHGAP39Q9C0H5 1083 aa16.82■□□□□ 0.28
SHKBP1-217ENST00000598558 RPAP3Q9H6T3 665 aaPredicted RBP16.82■□□□□ 0.28
SHKBP1-217ENST00000598558 ANO2Q9NQ90 1003 aa16.82■□□□□ 0.28
SHKBP1-217ENST00000598558 PTPRFP10586 1907 aa16.82■□□□□ 0.28
SHKBP1-217ENST00000598558 GREB1LQ9C091 1923 aaPredicted RBP16.82■□□□□ 0.28
SHKBP1-217ENST00000598558 F5H6K3 240 aa16.81■□□□□ 0.28
SHKBP1-217ENST00000598558 KDM4AO75164 1064 aa16.81■□□□□ 0.28
SHKBP1-217ENST00000598558 ECM2O94769 699 aaPredicted RBP16.81■□□□□ 0.28
SHKBP1-217ENST00000598558 SP3Q02447 781 aa16.81■□□□□ 0.28
SHKBP1-217ENST00000598558 KLRC3Q07444 240 aa16.81■□□□□ 0.28
SHKBP1-217ENST00000598558 CYB5R4Q7L1T6 521 aa16.81■□□□□ 0.28
SHKBP1-217ENST00000598558 RASGRP2Q7LDG7 609 aa16.81■□□□□ 0.28
SHKBP1-217ENST00000598558 CD99L2Q8TCZ2 262 aa16.81■□□□□ 0.28
SHKBP1-217ENST00000598558 NUP88Q99567 741 aaPredicted RBP16.81■□□□□ 0.28
SHKBP1-217ENST00000598558 ZKSCAN3Q9BRR0 538 aa16.81■□□□□ 0.28
SHKBP1-217ENST00000598558 TXNRD2Q9NNW7 524 aa16.81■□□□□ 0.28
SHKBP1-217ENST00000598558 TCP11L1Q9NUJ3 509 aa16.81■□□□□ 0.28
SHKBP1-217ENST00000598558 ZSWIM5Q9P217 1185 aa16.81■□□□□ 0.28
SHKBP1-217ENST00000598558 LOC285556D6RIA3 1793 aa16.8■□□□□ 0.28
SHKBP1-217ENST00000598558 USP17L15C9J2P7 530 aa16.8■□□□□ 0.28
SHKBP1-217ENST00000598558 USP17L13C9JLJ4 530 aa16.8■□□□□ 0.28
SHKBP1-217ENST00000598558 USP17L11C9JVI0 530 aa16.8■□□□□ 0.28
SHKBP1-217ENST00000598558 USP17L18D6R9N7 530 aa16.8■□□□□ 0.28
SHKBP1-217ENST00000598558 USP17L22D6RA61 530 aa16.8■□□□□ 0.28
SHKBP1-217ENST00000598558 USP17L17D6RBQ6 530 aa16.8■□□□□ 0.28
SHKBP1-217ENST00000598558 USP17L19D6RCP7 530 aa16.8■□□□□ 0.28
SHKBP1-217ENST00000598558 USP17L20D6RJB6 530 aa16.8■□□□□ 0.28
SHKBP1-217ENST00000598558 E7EWF7 191 aa16.8■□□□□ 0.28
SHKBP1-217ENST00000598558 SLC27A2O14975 620 aa16.8■□□□□ 0.28
SHKBP1-217ENST00000598558 TTLL1O95922 423 aa16.8■□□□□ 0.28
SHKBP1-217ENST00000598558 NDUFB10O96000 172 aa16.8■□□□□ 0.28
SHKBP1-217ENST00000598558 OSBPP22059 807 aa16.8■□□□□ 0.28
SHKBP1-217ENST00000598558 USP17L24Q0WX57 530 aa16.8■□□□□ 0.28
SHKBP1-217ENST00000598558 KIAA1211Q6ZU35 1233 aa16.8■□□□□ 0.28
SHKBP1-217ENST00000598558 CHMP4CQ96CF2 233 aa16.8■□□□□ 0.28
SHKBP1-217ENST00000598558 RNF41Q9H4P4 317 aaPredicted RBP16.8■□□□□ 0.28
SHKBP1-217ENST00000598558 FBXO28Q9NVF7 368 aa16.8■□□□□ 0.28
SHKBP1-217ENST00000598558 RBPJLQ9UBG7 517 aa16.8■□□□□ 0.28
SHKBP1-217ENST00000598558 CNMDO75829 334 aa16.79■□□□□ 0.28
SHKBP1-217ENST00000598558 PCP11498 1178 aaKnown RBP16.79■□□□□ 0.28
SHKBP1-217ENST00000598558 HERVK_113P62684 666 aa16.79■□□□□ 0.28
SHKBP1-217ENST00000598558 PABPC4Q13310 644 aaKnown RBP eCLIP16.79■□□□□ 0.28
SHKBP1-217ENST00000598558 Q3C1V9 767 aa16.79■□□□□ 0.28
SHKBP1-217ENST00000598558 CREB3L3Q68CJ9 461 aa16.79■□□□□ 0.28
SHKBP1-217ENST00000598558 ANKRD13CQ8N6S4 541 aa16.79■□□□□ 0.28
SHKBP1-217ENST00000598558 STX8Q9UNK0 236 aa16.79■□□□□ 0.28
SHKBP1-217ENST00000598558 SPDYE16A6NNV3 312 aaPredicted RBP16.78■□□□□ 0.28
SHKBP1-217ENST00000598558 RAD21O60216 631 aa16.78■□□□□ 0.28
SHKBP1-217ENST00000598558 IRX3P78415 501 aaPredicted RBP16.78■□□□□ 0.28
SHKBP1-217ENST00000598558 FAM83BQ5T0W9 1011 aa16.78■□□□□ 0.28
SHKBP1-217ENST00000598558 RASEFQ8IZ41 740 aa16.78■□□□□ 0.28
SHKBP1-217ENST00000598558 SMCR8Q8TEV9 937 aaPredicted RBP16.78■□□□□ 0.28
SHKBP1-217ENST00000598558 LPAR1Q92633 364 aa16.78■□□□□ 0.28
SHKBP1-217ENST00000598558 ESR2Q92731 530 aa16.78■□□□□ 0.28
SHKBP1-217ENST00000598558 TMEM47Q9BQJ4 181 aa16.78■□□□□ 0.28
SHKBP1-217ENST00000598558 SH2D4AQ9H788 454 aa16.78■□□□□ 0.28
SHKBP1-217ENST00000598558 PNMA3Q9UL41 463 aa16.78■□□□□ 0.28
SHKBP1-217ENST00000598558 WDR46O15213 610 aaKnown RBP16.77■□□□□ 0.28
SHKBP1-217ENST00000598558 LACTBP83111 547 aaPredicted RBP16.77■□□□□ 0.28
SHKBP1-217ENST00000598558 SLFN13Q68D06 897 aa16.77■□□□□ 0.28
SHKBP1-217ENST00000598558 CASC1Q6TDU7 716 aa16.77■□□□□ 0.28
SHKBP1-217ENST00000598558 BTBD7Q9P203 1132 aa16.77■□□□□ 0.28
SHKBP1-217ENST00000598558 DSG3P32926 999 aa16.76■□□□□ 0.27
SHKBP1-217ENST00000598558 ANTXR2P58335 489 aa16.76■□□□□ 0.27
SHKBP1-217ENST00000598558 COG2Q14746 738 aa16.76■□□□□ 0.27
SHKBP1-217ENST00000598558 CHST3Q7LGC8 479 aa16.76■□□□□ 0.27
SHKBP1-217ENST00000598558 OTOP1Q7RTM1 612 aa16.76■□□□□ 0.27
SHKBP1-217ENST00000598558 GMCL1P1Q8NEA9 526 aa16.76■□□□□ 0.27
SHKBP1-217ENST00000598558 ATG4CQ96DT6 458 aa16.76■□□□□ 0.27
SHKBP1-217ENST00000598558 TRIM47Q96LD4 638 aa16.76■□□□□ 0.27
SHKBP1-217ENST00000598558 KRT23Q9C075 422 aa16.76■□□□□ 0.27
SHKBP1-217ENST00000598558 TANGO6Q9C0B7 1094 aa16.76■□□□□ 0.27
SHKBP1-217ENST00000598558 SENP2Q9HC62 589 aa16.76■□□□□ 0.27
SHKBP1-217ENST00000598558 GOPCQ9HD26 462 aa16.76■□□□□ 0.27
SHKBP1-217ENST00000598558 MORF4L1Q9UBU8 362 aa16.76■□□□□ 0.27
SHKBP1-217ENST00000598558 CASP8AP2Q9UKL3 1982 aa16.75■□□□□ 0.27
SHKBP1-217ENST00000598558 MCCP23508 829 aa16.75■□□□□ 0.27
SHKBP1-217ENST00000598558 GCLCP48506 637 aaPredicted RBP16.75■□□□□ 0.27
SHKBP1-217ENST00000598558 SEC23AQ15436 765 aa16.75■□□□□ 0.27
SHKBP1-217ENST00000598558 LBX2Q6XYB7 198 aa16.75■□□□□ 0.27
SHKBP1-217ENST00000598558 MB21D2Q8IYB1 491 aaPredicted RBP16.75■□□□□ 0.27
SHKBP1-217ENST00000598558 ENAHQ8N8S7 591 aaPredicted RBP16.75■□□□□ 0.27
SHKBP1-217ENST00000598558 ANKS1AQ92625 1134 aa16.75■□□□□ 0.27
SHKBP1-217ENST00000598558 ERO1AQ96HE7 468 aa16.75■□□□□ 0.27
SHKBP1-217ENST00000598558 ZSCAN10Q96SZ4 725 aaPredicted RBP16.75■□□□□ 0.27
SHKBP1-217ENST00000598558 GPHNQ9NQX3 736 aaPredicted RBP16.75■□□□□ 0.27
SHKBP1-217ENST00000598558 SYNPO2Q9UMS6 1093 aa16.75■□□□□ 0.27
SHKBP1-217ENST00000598558 MTMR7Q9Y216 660 aa16.75■□□□□ 0.27
SHKBP1-217ENST00000598558 GTF3C3Q9Y5Q9 886 aa16.75■□□□□ 0.27
SHKBP1-217ENST00000598558 FLOT1O75955 427 aa16.74■□□□□ 0.27
SHKBP1-217ENST00000598558 TOP1P11387 765 aaKnown RBP16.74■□□□□ 0.27
SHKBP1-217ENST00000598558 PSMC4P43686 418 aa16.74■□□□□ 0.27
SHKBP1-217ENST00000598558 FAM110CQ1W6H9 321 aa16.74■□□□□ 0.27
SHKBP1-217ENST00000598558 ADCK5Q3MIX3 580 aa16.74■□□□□ 0.27
SHKBP1-217ENST00000598558 SAMD1Q6SPF0 538 aaPredicted RBP16.74■□□□□ 0.27
SHKBP1-217ENST00000598558 CTU1Q7Z7A3 348 aaKnown RBP16.74■□□□□ 0.27
SHKBP1-217ENST00000598558 DGKHQ86XP1 1220 aa16.74■□□□□ 0.27
SHKBP1-217ENST00000598558 KCNB2Q92953 911 aa16.74■□□□□ 0.27
SHKBP1-217ENST00000598558 TTC14Q96N46 770 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms