RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 RRP1BQ14684 758 aaKnown RBP17.72■□□□□ 0.43
TRIM28-209ENST00000597423 ASPRV1Q53RT3 343 aa17.72■□□□□ 0.43
TRIM28-209ENST00000597423 LARP1BQ659C4 914 aaKnown RBP17.72■□□□□ 0.43
TRIM28-209ENST00000597423 WRNIP1Q96S55 665 aa17.72■□□□□ 0.43
TRIM28-209ENST00000597423 GOPCQ9HD26 462 aa17.72■□□□□ 0.43
TRIM28-209ENST00000597423 FAM217BQ9NTX9 383 aaPredicted RBP17.72■□□□□ 0.43
TRIM28-209ENST00000597423 ORC3Q9UBD5 711 aaPredicted RBP17.72■□□□□ 0.43
TRIM28-209ENST00000597423 WDR90Q96KV7 1748 aa17.72■□□□□ 0.43
TRIM28-209ENST00000597423 USP17L5A8MUK1 530 aa17.71■□□□□ 0.43
TRIM28-209ENST00000597423 CTDNEP1O95476 244 aa17.71■□□□□ 0.43
TRIM28-209ENST00000597423 DDIT3P35638 169 aa17.71■□□□□ 0.43
TRIM28-209ENST00000597423 MAP3K9P80192 1104 aa17.71■□□□□ 0.43
TRIM28-209ENST00000597423 GPATCH4Q5T3I0 446 aaKnown RBP17.71■□□□□ 0.43
TRIM28-209ENST00000597423 TMTC3Q6ZXV5 915 aa17.71■□□□□ 0.43
TRIM28-209ENST00000597423 SCYL3Q8IZE3 742 aa17.71■□□□□ 0.43
TRIM28-209ENST00000597423 RGS22Q8NE09 1264 aa17.71■□□□□ 0.43
TRIM28-209ENST00000597423 GMCL1P1Q8NEA9 526 aa17.71■□□□□ 0.43
TRIM28-209ENST00000597423 DCAF4Q8WV16 495 aa17.71■□□□□ 0.43
TRIM28-209ENST00000597423 KLRG1Q96E93 195 aa17.71■□□□□ 0.43
TRIM28-209ENST00000597423 DDX11Q96FC9 970 aa17.71■□□□□ 0.43
TRIM28-209ENST00000597423 CDCA5Q96FF9 252 aa17.71■□□□□ 0.43
TRIM28-209ENST00000597423 AS3MTQ9HBK9 375 aa17.71■□□□□ 0.43
TRIM28-209ENST00000597423 PALM3A6NDB9 673 aaPredicted RBP17.7■□□□□ 0.42
TRIM28-209ENST00000597423 JAK2O60674 1132 aa17.7■□□□□ 0.42
TRIM28-209ENST00000597423 FMNL1O95466 1100 aaPredicted RBP17.7■□□□□ 0.42
TRIM28-209ENST00000597423 SLFN13Q68D06 897 aa17.7■□□□□ 0.42
TRIM28-209ENST00000597423 ARMC9Q7Z3E5 817 aa17.7■□□□□ 0.42
TRIM28-209ENST00000597423 LRRC47Q8N1G4 583 aaKnown RBP17.7■□□□□ 0.42
TRIM28-209ENST00000597423 SLC26A6Q9BXS9 759 aa17.7■□□□□ 0.42
TRIM28-209ENST00000597423 MTMR7Q9Y216 660 aa17.7■□□□□ 0.42
TRIM28-209ENST00000597423 TMX2Q9Y320 296 aa17.7■□□□□ 0.42
TRIM28-209ENST00000597423 CSADQ9Y600 493 aa17.7■□□□□ 0.42
TRIM28-209ENST00000597423 WDR33Q9C0J8 1336 aaKnown RBP17.7■□□□□ 0.42
TRIM28-209ENST00000597423 STK36Q9NRP7 1315 aa17.7■□□□□ 0.42
TRIM28-209ENST00000597423 KLRF2D3W0D1 207 aa17.69■□□□□ 0.42
TRIM28-209ENST00000597423 F5H6K3 240 aa17.69■□□□□ 0.42
TRIM28-209ENST00000597423 H3BQV1 296 aa17.69■□□□□ 0.42
TRIM28-209ENST00000597423 PRPF3O43395 683 aaKnown RBP17.69■□□□□ 0.42
TRIM28-209ENST00000597423 RAD21O60216 631 aa17.69■□□□□ 0.42
TRIM28-209ENST00000597423 USP2O75604 605 aaPredicted RBP17.69■□□□□ 0.42
TRIM28-209ENST00000597423 DEXIO95424 95 aa17.69■□□□□ 0.42
TRIM28-209ENST00000597423 XBP1P17861 261 aa17.69■□□□□ 0.42
TRIM28-209ENST00000597423 SLC1A4P43007 532 aa17.69■□□□□ 0.42
TRIM28-209ENST00000597423 KLRC3Q07444 240 aa17.69■□□□□ 0.42
TRIM28-209ENST00000597423 TRIM29Q14134 588 aa17.69■□□□□ 0.42
TRIM28-209ENST00000597423 TTLL12Q14166 644 aaPredicted RBP17.69■□□□□ 0.42
TRIM28-209ENST00000597423 NTRK3Q16288 839 aa17.69■□□□□ 0.42
TRIM28-209ENST00000597423 NOL9Q5SY16 702 aaKnown RBP17.69■□□□□ 0.42
TRIM28-209ENST00000597423 IFFO2Q5TF58 517 aa17.69■□□□□ 0.42
TRIM28-209ENST00000597423 SIAH1Q8IUQ4 282 aa17.69■□□□□ 0.42
TRIM28-209ENST00000597423 RNF26Q9BY78 433 aaPredicted RBP17.69■□□□□ 0.42
TRIM28-209ENST00000597423 GLIS2Q9BZE0 524 aaPredicted RBP17.69■□□□□ 0.42
TRIM28-209ENST00000597423 UNCXA6NJT0 531 aa17.68■□□□□ 0.42
TRIM28-209ENST00000597423 STX6O43752 255 aa17.68■□□□□ 0.42
TRIM28-209ENST00000597423 SNHG28P0DPA3 235 aa17.68■□□□□ 0.42
TRIM28-209ENST00000597423 PDHBP11177 359 aa17.68■□□□□ 0.42
TRIM28-209ENST00000597423 SYT1P21579 422 aa17.68■□□□□ 0.42
TRIM28-209ENST00000597423 USP14P54578 494 aa17.68■□□□□ 0.42
TRIM28-209ENST00000597423 JAG1P78504 1218 aa17.68■□□□□ 0.42
TRIM28-209ENST00000597423 CCDC96Q2M329 555 aa17.68■□□□□ 0.42
TRIM28-209ENST00000597423 GMCL1Q96IK5 515 aa17.68■□□□□ 0.42
TRIM28-209ENST00000597423 FEZ1Q99689 392 aa17.68■□□□□ 0.42
TRIM28-209ENST00000597423 WDR18Q9BV38 432 aa17.68■□□□□ 0.42
TRIM28-209ENST00000597423 MAD2L2Q9UI95 211 aa17.68■□□□□ 0.42
TRIM28-209ENST00000597423 INPP5BP32019 993 aa17.67■□□□□ 0.42
TRIM28-209ENST00000597423 ZNF543Q08ER8 600 aa17.67■□□□□ 0.42
TRIM28-209ENST00000597423 USP17L2Q6R6M4 530 aa17.67■□□□□ 0.42
TRIM28-209ENST00000597423 CLEC10AQ8IUN9 316 aa17.67■□□□□ 0.42
TRIM28-209ENST00000597423 CCDC82Q8N4S0 544 aa17.67■□□□□ 0.42
TRIM28-209ENST00000597423 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.67■□□□□ 0.421e-6■□□□□ 9.5
TRIM28-209ENST00000597423 PHKBQ93100 1093 aa17.67■□□□□ 0.42
TRIM28-209ENST00000597423 ISY1Q9ULR0 285 aaKnown RBP17.67■□□□□ 0.42
TRIM28-209ENST00000597423 V9GY48 417 aaPredicted RBP17.67■□□□□ 0.42
TRIM28-209ENST00000597423 SIPA1L1O43166 1804 aa17.66■□□□□ 0.42
TRIM28-209ENST00000597423 PRKG1Q13976 671 aa17.66■□□□□ 0.42
TRIM28-209ENST00000597423 SHROOM1Q2M3G4 852 aaPredicted RBP17.66■□□□□ 0.42
TRIM28-209ENST00000597423 MAP1SQ66K74 1059 aaPredicted RBP17.66■□□□□ 0.42
TRIM28-209ENST00000597423 NBPF11Q86T75 865 aa17.66■□□□□ 0.42
TRIM28-209ENST00000597423 ANKRD13AQ8IZ07 590 aa17.66■□□□□ 0.42
TRIM28-209ENST00000597423 SRBD1Q8N5C6 995 aaKnown RBP17.66■□□□□ 0.42
TRIM28-209ENST00000597423 ZNF526Q8TF50 670 aaPredicted RBP17.66■□□□□ 0.42
TRIM28-209ENST00000597423 ZKSCAN4Q969J2 545 aaPredicted RBP17.66■□□□□ 0.42
TRIM28-209ENST00000597423 C8orf76Q96K31 380 aa17.66■□□□□ 0.42
TRIM28-209ENST00000597423 ALG1Q9BT22 464 aa17.66■□□□□ 0.42
TRIM28-209ENST00000597423 SPZ1Q9BXG8 430 aa17.66■□□□□ 0.42
TRIM28-209ENST00000597423 KIAA1683Q9H0B3 1180 aa17.66■□□□□ 0.42
TRIM28-209ENST00000597423 NMRK2Q9NPI5 230 aa17.66■□□□□ 0.42
TRIM28-209ENST00000597423 ATP6V1DQ9Y5K8 247 aa17.66■□□□□ 0.42
TRIM28-209ENST00000597423 C19orf81C9J6K1 198 aa17.65■□□□□ 0.42
TRIM28-209ENST00000597423 USP17L10C9JJH3 530 aa17.65■□□□□ 0.42
TRIM28-209ENST00000597423 PLEKHA8P1O95397 391 aa17.65■□□□□ 0.42
TRIM28-209ENST00000597423 NDUFB10O96000 172 aa17.65■□□□□ 0.42
TRIM28-209ENST00000597423 BMP3P12645 472 aa17.65■□□□□ 0.42
TRIM28-209ENST00000597423 FDPSP14324 419 aaKnown RBP17.65■□□□□ 0.42
TRIM28-209ENST00000597423 PTPRAP18433 802 aa17.65■□□□□ 0.42
TRIM28-209ENST00000597423 FKBP1BP68106 108 aa17.65■□□□□ 0.42
TRIM28-209ENST00000597423 MAP3K11Q16584 847 aa17.65■□□□□ 0.42
TRIM28-209ENST00000597423 STAG2Q8N3U4 1231 aa17.65■□□□□ 0.42
TRIM28-209ENST00000597423 ZNF280CQ8ND82 737 aa17.65■□□□□ 0.42
TRIM28-209ENST00000597423 ACER1Q8TDN7 264 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms