RNA–Protein interactions for RNA: ENST00000589285.1

ZNF540-207, Transcript of zinc finger protein 540, humanhuman

Gene ZNF540, Length 3,106 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-207ENST00000589285 CDC37L1Q7L3B6 337 aa4.68□□□□□ -1.66
ZNF540-207ENST00000589285 ALYREFQ86V81 257 aaKnown RBP4.68□□□□□ -1.66
ZNF540-207ENST00000589285 CLEC10AQ8IUN9 316 aa4.68□□□□□ -1.66
ZNF540-207ENST00000589285 EZH1Q92800 747 aaPredicted RBP4.68□□□□□ -1.66
ZNF540-207ENST00000589285 KIF2CQ99661 725 aa4.68□□□□□ -1.66
ZNF540-207ENST00000589285 WNT10AQ9GZT5 417 aa4.68□□□□□ -1.66
ZNF540-207ENST00000589285 TPX2Q9ULW0 747 aaKnown RBP4.68□□□□□ -1.66
ZNF540-207ENST00000589285 ARHGAP5Q13017 1502 aa4.67□□□□□ -1.66
ZNF540-207ENST00000589285 KIF3BO15066 747 aa4.67□□□□□ -1.66
ZNF540-207ENST00000589285 CBX7O95931 251 aa4.67□□□□□ -1.66
ZNF540-207ENST00000589285 OVOS1Q6IE37 1185 aa4.67□□□□□ -1.66
ZNF540-207ENST00000589285 NPM2Q86SE8 214 aaKnown RBP4.67□□□□□ -1.66
ZNF540-207ENST00000589285 PREX1Q8TCU6 1659 aa4.67□□□□□ -1.66
ZNF540-207ENST00000589285 ARHGEF12Q9NZN5 1544 aa4.67□□□□□ -1.66
ZNF540-207ENST00000589285 PTPRKQ15262 1439 aa4.67□□□□□ -1.66
ZNF540-207ENST00000589285 SCAPERQ9BY12 1400 aa4.67□□□□□ -1.66
ZNF540-207ENST00000589285 IGLV1-40P01703 118 aa4.67□□□□□ -1.66
ZNF540-207ENST00000589285 NASPP49321 788 aaPredicted RBP4.67□□□□□ -1.66
ZNF540-207ENST00000589285 RPS26P62854 115 aaKnown RBP4.67□□□□□ -1.66
ZNF540-207ENST00000589285 FAM13CQ8NE31 585 aa4.67□□□□□ -1.66
ZNF540-207ENST00000589285 ANAPC16Q96DE5 110 aa4.67□□□□□ -1.66
ZNF540-207ENST00000589285 ZC3H7BQ9UGR2 993 aaKnown RBP4.67□□□□□ -1.66
ZNF540-207ENST00000589285 INPP5FQ9Y2H2 1132 aa4.67□□□□□ -1.66
ZNF540-207ENST00000589285 LMTK3Q96Q04 1460 aa4.67□□□□□ -1.66
ZNF540-207ENST00000589285 MYOM3Q5VTT5 1437 aa4.67□□□□□ -1.66
ZNF540-207ENST00000589285 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP4.66□□□□□ -1.66
ZNF540-207ENST00000589285 MEIS1O00470 390 aa4.66□□□□□ -1.66
ZNF540-207ENST00000589285 EOMESO95936 686 aa4.66□□□□□ -1.66
ZNF540-207ENST00000589285 ACRP10323 421 aa4.66□□□□□ -1.66
ZNF540-207ENST00000589285 XP32Q5T750 250 aa4.66□□□□□ -1.66
ZNF540-207ENST00000589285 PAOXQ6QHF9 649 aa4.66□□□□□ -1.66
ZNF540-207ENST00000589285 RAB3GAP2Q9H2M9 1393 aa4.66□□□□□ -1.66
ZNF540-207ENST00000589285 HECW2Q9P2P5 1572 aa4.66□□□□□ -1.66
ZNF540-207ENST00000589285 LETMD1Q6P1Q0 360 aa4.66□□□□□ -1.66
ZNF540-207ENST00000589285 NFXL1Q6ZNB6 911 aa4.66□□□□□ -1.66
ZNF540-207ENST00000589285 PHACTR4Q8IZ21 702 aa4.66□□□□□ -1.66
ZNF540-207ENST00000589285 TMEM87BQ96K49 555 aa4.66□□□□□ -1.66
ZNF540-207ENST00000589285 OSBPL1AQ9BXW6 950 aa4.66□□□□□ -1.66
ZNF540-207ENST00000589285 ZFYVE1Q9HBF4 777 aa4.66□□□□□ -1.66
ZNF540-207ENST00000589285 PRDM10Q9NQV6 1147 aa4.66□□□□□ -1.66
ZNF540-207ENST00000589285 PPP1R1BQ9UD71 204 aaPredicted RBP4.66□□□□□ -1.66
ZNF540-207ENST00000589285 SPAG9O60271 1321 aaKnown RBP4.66□□□□□ -1.66
ZNF540-207ENST00000589285 SHISA3A0PJX4 238 aa4.66□□□□□ -1.66
ZNF540-207ENST00000589285 FANCGO15287 622 aa4.66□□□□□ -1.66
ZNF540-207ENST00000589285 PPP2R5EQ16537 467 aa4.66□□□□□ -1.66
ZNF540-207ENST00000589285 Q8N3U1 123 aa4.66□□□□□ -1.66
ZNF540-207ENST00000589285 TNKS2Q9H2K2 1166 aa4.66□□□□□ -1.66
ZNF540-207ENST00000589285 COL17A1Q9UMD9 1497 aaPredicted RBP4.65□□□□□ -1.66
ZNF540-207ENST00000589285 TP53P04637 393 aaPredicted RBP4.65□□□□□ -1.66
ZNF540-207ENST00000589285 H2AFB1P0C5Y9 115 aa4.65□□□□□ -1.66
ZNF540-207ENST00000589285 H2AFB2P0C5Z0 115 aa4.65□□□□□ -1.66
ZNF540-207ENST00000589285 FGD1P98174 961 aa4.65□□□□□ -1.66
ZNF540-207ENST00000589285 CWF19L2Q2TBE0 894 aaKnown RBP4.65□□□□□ -1.66
ZNF540-207ENST00000589285 SPRED2Q7Z698 418 aa4.65□□□□□ -1.66
ZNF540-207ENST00000589285 MICAL1Q8TDZ2 1067 aa4.65□□□□□ -1.66
ZNF540-207ENST00000589285 DBNDD2Q9BQY9 259 aa4.65□□□□□ -1.66
ZNF540-207ENST00000589285 IGSF5Q9NSI5 407 aa4.65□□□□□ -1.66
ZNF540-207ENST00000589285 PLAGL2Q9UPG8 496 aa4.65□□□□□ -1.66
ZNF540-207ENST00000589285 GPATCH8Q9UKJ3 1502 aaKnown RBP4.65□□□□□ -1.67
ZNF540-207ENST00000589285 KDM5AP29375 1690 aaKnown RBP4.65□□□□□ -1.67
ZNF540-207ENST00000589285 SLC9A7Q96T83 725 aa4.65□□□□□ -1.67
ZNF540-207ENST00000589285 POLR3GLQ9BT43 218 aa4.65□□□□□ -1.67
ZNF540-207ENST00000589285 SLC22A31A6NKX4 558 aa4.64□□□□□ -1.67
ZNF540-207ENST00000589285 C9IYK1 514 aa4.64□□□□□ -1.67
ZNF540-207ENST00000589285 CYP26A1O43174 497 aa4.64□□□□□ -1.67
ZNF540-207ENST00000589285 NKPD1Q17RQ9 610 aa4.64□□□□□ -1.67
ZNF540-207ENST00000589285 UVSSAQ2YD98 709 aa4.64□□□□□ -1.67
ZNF540-207ENST00000589285 NKD1Q969G9 470 aa4.64□□□□□ -1.67
ZNF540-207ENST00000589285 FERD3LQ96RJ6 166 aa4.64□□□□□ -1.67
ZNF540-207ENST00000589285 CCSER2Q9H7U1 834 aa4.64□□□□□ -1.67
ZNF540-207ENST00000589285 TRAPPC8Q9Y2L5 1435 aa4.64□□□□□ -1.67
ZNF540-207ENST00000589285 CCDC85CA6NKD9 419 aa4.64□□□□□ -1.67
ZNF540-207ENST00000589285 B2RBV5 119 aa4.64□□□□□ -1.67
ZNF540-207ENST00000589285 UBOX5O94941 541 aa4.64□□□□□ -1.67
ZNF540-207ENST00000589285 CEBPAP49715 358 aaPredicted RBP4.64□□□□□ -1.67
ZNF540-207ENST00000589285 MAP7Q14244 749 aa4.64□□□□□ -1.67
ZNF540-207ENST00000589285 HID1Q8IV36 788 aa4.64□□□□□ -1.67
ZNF540-207ENST00000589285 Q96M66 194 aa4.64□□□□□ -1.67
ZNF540-207ENST00000589285 ETFBP38117 255 aa4.63□□□□□ -1.67
ZNF540-207ENST00000589285 GALK1P51570 392 aa4.63□□□□□ -1.67
ZNF540-207ENST00000589285 MPP2Q14168 576 aa4.63□□□□□ -1.67
ZNF540-207ENST00000589285 DCAF15Q66K64 600 aa4.63□□□□□ -1.67
ZNF540-207ENST00000589285 MCATQ8IVS2 390 aaKnown RBP4.63□□□□□ -1.67
ZNF540-207ENST00000589285 FANCAO15360 1455 aa4.63□□□□□ -1.67
ZNF540-207ENST00000589285 POGZQ7Z3K3 1410 aa4.63□□□□□ -1.67
ZNF540-207ENST00000589285 EHBP1L1Q8N3D4 1523 aa4.63□□□□□ -1.67
ZNF540-207ENST00000589285 SUPT6HQ7KZ85 1726 aaKnown RBP4.63□□□□□ -1.67
ZNF540-207ENST00000589285 OGFOD3Q6PK18 319 aa4.63□□□□□ -1.67
ZNF540-207ENST00000589285 PPP1R13LQ8WUF5 828 aa4.63□□□□□ -1.67
ZNF540-207ENST00000589285 GPRASP2Q96D09 838 aa4.63□□□□□ -1.67
ZNF540-207ENST00000589285 PCOLCE2Q9UKZ9 415 aa4.63□□□□□ -1.67
ZNF540-207ENST00000589285 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP4.63□□□□□ -1.67
ZNF540-207ENST00000589285 CAMSAP2Q08AD1 1489 aa4.63□□□□□ -1.67
ZNF540-207ENST00000589285 H3BS24 57 aa4.63□□□□□ -1.67
ZNF540-207ENST00000589285 ZPBP2Q6X784 338 aa4.63□□□□□ -1.67
ZNF540-207ENST00000589285 TMEM192Q8IY95 271 aa4.63□□□□□ -1.67
ZNF540-207ENST00000589285 ATG4CQ96DT6 458 aa4.63□□□□□ -1.67
ZNF540-207ENST00000589285 ATP13A1Q9HD20 1204 aa4.63□□□□□ -1.67
ZNF540-207ENST00000589285 SYCP2Q9BX26 1530 aa4.63□□□□□ -1.67
ZNF540-207ENST00000589285 NUP155O75694 1391 aa4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms