RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 DYNLL2Q96FJ2 89 aa12.94□□□□□ -0.34
LIG3-204ENST00000585740 MRIQ9BWK5 157 aa12.94□□□□□ -0.34
LIG3-204ENST00000585740 CBX8Q9HC52 389 aa12.94□□□□□ -0.34
LIG3-204ENST00000585740 RRAGDQ9NQL2 400 aaPredicted RBP12.94□□□□□ -0.34
LIG3-204ENST00000585740 FAM13BQ9NYF5 915 aa12.94□□□□□ -0.34
LIG3-204ENST00000585740 SAP30BPQ9UHR5 308 aaKnown RBP12.94□□□□□ -0.34
LIG3-204ENST00000585740 HOOK1Q9UJC3 728 aaKnown RBP12.94□□□□□ -0.34
LIG3-204ENST00000585740 HPSEQ9Y251 543 aa12.94□□□□□ -0.34
LIG3-204ENST00000585740 PLIN4Q96Q06 1357 aa12.94□□□□□ -0.34
LIG3-204ENST00000585740 TRIM75PA6NK02 468 aa12.93□□□□□ -0.34
LIG3-204ENST00000585740 GOLGA6L19H0YKK7 550 aa12.93□□□□□ -0.34
LIG3-204ENST00000585740 NMT2O60551 498 aa12.93□□□□□ -0.34
LIG3-204ENST00000585740 WDHD1O75717 1129 aaPredicted RBP12.93□□□□□ -0.34
LIG3-204ENST00000585740 PTPREP23469 700 aa12.93□□□□□ -0.34
LIG3-204ENST00000585740 SMARCA1P28370 1054 aa12.93□□□□□ -0.34
LIG3-204ENST00000585740 MARCKSP29966 332 aaPredicted RBP12.93□□□□□ -0.34
LIG3-204ENST00000585740 TRAPPC10P48553 1259 aa12.93□□□□□ -0.34
LIG3-204ENST00000585740 PLCD1P51178 756 aa12.93□□□□□ -0.34
LIG3-204ENST00000585740 HDLBPQ00341 1268 aaKnown RBP12.93□□□□□ -0.34
LIG3-204ENST00000585740 PPP4R3BQ5MIZ7 849 aa12.93□□□□□ -0.34
LIG3-204ENST00000585740 GALNT17Q6IS24 598 aa12.93□□□□□ -0.34
LIG3-204ENST00000585740 CEP57L1Q8IYX8 460 aa12.93□□□□□ -0.34
LIG3-204ENST00000585740 CMTR1Q8N1G2 835 aaKnown RBP12.93□□□□□ -0.34
LIG3-204ENST00000585740 CCDC34Q96HJ3 373 aa12.93□□□□□ -0.34
LIG3-204ENST00000585740 IL17RBQ9NRM6 502 aa12.93□□□□□ -0.34
LIG3-204ENST00000585740 VPS54Q9P1Q0 977 aa12.93□□□□□ -0.34
LIG3-204ENST00000585740 KIAA1468Q9P260 1216 aa12.93□□□□□ -0.34
LIG3-204ENST00000585740 SWAP70Q9UH65 585 aa12.93□□□□□ -0.34
LIG3-204ENST00000585740 TTF2Q9UNY4 1162 aaKnown RBP12.93□□□□□ -0.34
LIG3-204ENST00000585740 C10orf71Q711Q0 1435 aa12.93□□□□□ -0.34
LIG3-204ENST00000585740 SLX4Q8IY92 1834 aa12.92□□□□□ -0.34
LIG3-204ENST00000585740 UBE2Q2LH0YL09 131 aa12.92□□□□□ -0.34
LIG3-204ENST00000585740 TOB1P50616 345 aaPredicted RBP12.92□□□□□ -0.34
LIG3-204ENST00000585740 EVX2Q03828 476 aa12.92□□□□□ -0.34
LIG3-204ENST00000585740 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.92□□□□□ -0.34
LIG3-204ENST00000585740 CCDC148Q8NFR7 591 aa12.92□□□□□ -0.34
LIG3-204ENST00000585740 SNED1Q8TER0 1413 aa12.92□□□□□ -0.34
LIG3-204ENST00000585740 TEKT1Q969V4 418 aa12.92□□□□□ -0.34
LIG3-204ENST00000585740 BPIFA3Q9BQP9 254 aa12.92□□□□□ -0.34
LIG3-204ENST00000585740 DNAJC25Q9H1X3 360 aa12.92□□□□□ -0.34
LIG3-204ENST00000585740 RTN4Q9NQC3 1192 aaKnown RBP12.92□□□□□ -0.34
LIG3-204ENST00000585740 ZKSCAN5Q9Y2L8 839 aa12.92□□□□□ -0.34
LIG3-204ENST00000585740 SRPRBQ9Y5M8 271 aaKnown RBP12.92□□□□□ -0.34
LIG3-204ENST00000585740 BECN2A8MW95 431 aa12.91□□□□□ -0.34
LIG3-204ENST00000585740 HLA-DOAP06340 250 aa12.91□□□□□ -0.34
LIG3-204ENST00000585740 TOP1P11387 765 aaKnown RBP12.91□□□□□ -0.34
LIG3-204ENST00000585740 NOVP48745 357 aa12.91□□□□□ -0.34
LIG3-204ENST00000585740 NLRP5P59047 1200 aa12.91□□□□□ -0.34
LIG3-204ENST00000585740 NR5A1Q13285 461 aa12.91□□□□□ -0.34
LIG3-204ENST00000585740 STRIP1Q5VSL9 837 aa12.91□□□□□ -0.34
LIG3-204ENST00000585740 TMEM47Q9BQJ4 181 aa12.91□□□□□ -0.34
LIG3-204ENST00000585740 CABP5Q9NP86 173 aa12.91□□□□□ -0.34
LIG3-204ENST00000585740 USP40Q9NVE5 1235 aa12.91□□□□□ -0.34
LIG3-204ENST00000585740 PSME4Q14997 1843 aa12.9□□□□□ -0.34
LIG3-204ENST00000585740 BAZ2BQ9UIF8 2168 aaKnown RBP12.9□□□□□ -0.34
LIG3-204ENST00000585740 USP17L3A6NCW0 530 aa12.9□□□□□ -0.34
LIG3-204ENST00000585740 USP17L4A6NCW7 530 aa12.9□□□□□ -0.34
LIG3-204ENST00000585740 PALM3A6NDB9 673 aaPredicted RBP12.9□□□□□ -0.34
LIG3-204ENST00000585740 NLRP12P59046 1061 aa12.9□□□□□ -0.34
LIG3-204ENST00000585740 TPM4P67936 248 aa12.9□□□□□ -0.34
LIG3-204ENST00000585740 HTRA3P83110 453 aa12.9□□□□□ -0.34
LIG3-204ENST00000585740 DOK7Q18PE1 504 aa12.9□□□□□ -0.34
LIG3-204ENST00000585740 KANK3Q6NY19 840 aa12.9□□□□□ -0.34
LIG3-204ENST00000585740 SHC4Q6S5L8 630 aa12.9□□□□□ -0.34
LIG3-204ENST00000585740 USP17L1Q7RTZ2 530 aa12.9□□□□□ -0.34
LIG3-204ENST00000585740 LUZP1Q86V48 1076 aa12.9□□□□□ -0.34
LIG3-204ENST00000585740 CERS5Q8N5B7 392 aa12.9□□□□□ -0.34
LIG3-204ENST00000585740 SLC44A5Q8NCS7 719 aa12.9□□□□□ -0.34
LIG3-204ENST00000585740 OXER1Q8TDS5 423 aa12.9□□□□□ -0.34
LIG3-204ENST00000585740 CCDC12Q8WUD4 166 aaPredicted RBP12.9□□□□□ -0.34
LIG3-204ENST00000585740 TNFRSF25Q93038 417 aa12.9□□□□□ -0.34
LIG3-204ENST00000585740 FERMT2Q96AC1 680 aa12.9□□□□□ -0.34
LIG3-204ENST00000585740 SPZ1Q9BXG8 430 aa12.9□□□□□ -0.34
LIG3-204ENST00000585740 MAD2L2Q9UI95 211 aa12.9□□□□□ -0.34
LIG3-204ENST00000585740 FBXO2Q9UK22 296 aaPredicted RBP12.9□□□□□ -0.34
LIG3-204ENST00000585740 KCNH3Q9ULD8 1083 aa12.9□□□□□ -0.34
LIG3-204ENST00000585740 STX8Q9UNK0 236 aa12.9□□□□□ -0.34
LIG3-204ENST00000585740 ZNF646O15015 1829 aaPredicted RBP12.9□□□□□ -0.34
LIG3-204ENST00000585740 SMTNL1A8MU46 457 aa12.89□□□□□ -0.35
LIG3-204ENST00000585740 hCG_1984214I3L0E3 225 aa12.89□□□□□ -0.35
LIG3-204ENST00000585740 NPM3O75607 178 aaKnown RBP12.89□□□□□ -0.35
LIG3-204ENST00000585740 PARP1P09874 1014 aaKnown RBP12.89□□□□□ -0.35
LIG3-204ENST00000585740 PLCB2Q00722 1185 aa12.89□□□□□ -0.35
LIG3-204ENST00000585740 GABPAQ06546 454 aa12.89□□□□□ -0.35
LIG3-204ENST00000585740 IQCB1Q15051 598 aa12.89□□□□□ -0.35
LIG3-204ENST00000585740 SLC4A8Q2Y0W8 1093 aa12.89□□□□□ -0.35
LIG3-204ENST00000585740 SARM1Q6SZW1 724 aa12.89□□□□□ -0.35
LIG3-204ENST00000585740 TNS4Q8IZW8 715 aa12.89□□□□□ -0.35
LIG3-204ENST00000585740 ZNF713Q8N859 430 aaPredicted RBP12.89□□□□□ -0.35
LIG3-204ENST00000585740 DAGLBQ8NCG7 672 aa12.89□□□□□ -0.35
LIG3-204ENST00000585740 KLRG1Q96E93 195 aa12.89□□□□□ -0.35
LIG3-204ENST00000585740 ZDHHC15Q96MV8 337 aa12.89□□□□□ -0.35
LIG3-204ENST00000585740 PYM1Q9BRP8 204 aaKnown RBP12.89□□□□□ -0.35
LIG3-204ENST00000585740 OSBPL5Q9H0X9 879 aaPredicted RBP12.89□□□□□ -0.35
LIG3-204ENST00000585740 NMRK2Q9NPI5 230 aa12.89□□□□□ -0.35
LIG3-204ENST00000585740 PCDHB6Q9Y5E3 794 aa12.89□□□□□ -0.35
LIG3-204ENST00000585740 F8W031 263 aaPredicted RBP12.88□□□□□ -0.35
LIG3-204ENST00000585740 ZNF500O60304 480 aaPredicted RBP12.88□□□□□ -0.35
LIG3-204ENST00000585740 CDC25BP30305 580 aa12.88□□□□□ -0.35
LIG3-204ENST00000585740 CRKP46108 304 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms