RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 RTN1Q16799 776 aa12.53□□□□□ -0.4
SS18-213ENST00000579640 CPLX2Q6PUV4 134 aaKnown RBP12.53□□□□□ -0.4
SS18-213ENST00000579640 CLEC10AQ8IUN9 316 aa12.53□□□□□ -0.4
SS18-213ENST00000579640 SIAH1Q8IUQ4 282 aa12.53□□□□□ -0.4
SS18-213ENST00000579640 CCDC83Q8IWF9 413 aa12.53□□□□□ -0.4
SS18-213ENST00000579640 FANCBQ8NB91 859 aa12.53□□□□□ -0.4
SS18-213ENST00000579640 GMCL1P1Q8NEA9 526 aa12.53□□□□□ -0.4
SS18-213ENST00000579640 LLPHQ9BRT6 129 aaKnown RBP12.53□□□□□ -0.4
SS18-213ENST00000579640 TMX2Q9Y320 296 aa12.53□□□□□ -0.4
SS18-213ENST00000579640 TRAF5O00463 557 aa12.53□□□□□ -0.4
SS18-213ENST00000579640 CDKL5O76039 1030 aa12.53□□□□□ -0.4
SS18-213ENST00000579640 ITGBL1O95965 494 aaPredicted RBP12.53□□□□□ -0.4
SS18-213ENST00000579640 CCT2P78371 535 aaKnown RBP12.53□□□□□ -0.4
SS18-213ENST00000579640 GRM4Q14833 912 aa12.53□□□□□ -0.4
SS18-213ENST00000579640 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.53□□□□□ -0.4
SS18-213ENST00000579640 LRRC47Q8N1G4 583 aaKnown RBP12.53□□□□□ -0.4
SS18-213ENST00000579640 NECAB1Q8N987 351 aa12.53□□□□□ -0.4
SS18-213ENST00000579640 ZKSCAN4Q969J2 545 aaPredicted RBP12.53□□□□□ -0.4
SS18-213ENST00000579640 MYL10Q9BUA6 226 aa12.53□□□□□ -0.4
SS18-213ENST00000579640 WDR18Q9BV38 432 aa12.53□□□□□ -0.4
SS18-213ENST00000579640 OTOFQ9HC10 1997 aa12.52□□□□□ -0.4
SS18-213ENST00000579640 CPLX1O14810 134 aa12.52□□□□□ -0.41
SS18-213ENST00000579640 PTPRAP18433 802 aa12.52□□□□□ -0.41
SS18-213ENST00000579640 GNAQP50148 359 aa12.52□□□□□ -0.41
SS18-213ENST00000579640 VGLL4Q14135 290 aa12.52□□□□□ -0.41
SS18-213ENST00000579640 SMC1BQ8NDV3 1235 aa12.52□□□□□ -0.41
SS18-213ENST00000579640 DCAF4Q8WV16 495 aa12.52□□□□□ -0.41
SS18-213ENST00000579640 GOPCQ9HD26 462 aa12.52□□□□□ -0.41
SS18-213ENST00000579640 FZD1Q9UP38 647 aa12.52□□□□□ -0.41
SS18-213ENST00000579640 TRPM7Q96QT4 1865 aa12.51□□□□□ -0.41
SS18-213ENST00000579640 PARP1P09874 1014 aaKnown RBP12.51□□□□□ -0.41
SS18-213ENST00000579640 SNHG28P0DPA3 235 aa12.51□□□□□ -0.41
SS18-213ENST00000579640 RXRAP19793 462 aa12.51□□□□□ -0.41
SS18-213ENST00000579640 ST3GAL1Q11201 340 aa12.51□□□□□ -0.41
SS18-213ENST00000579640 ASPRV1Q53RT3 343 aa12.51□□□□□ -0.41
SS18-213ENST00000579640 LDLRAD1Q5T700 205 aa12.51□□□□□ -0.41
SS18-213ENST00000579640 RAB11FIP4Q86YS3 637 aa12.51□□□□□ -0.41
SS18-213ENST00000579640 C2orf69Q8N8R5 385 aa12.51□□□□□ -0.41
SS18-213ENST00000579640 LZTS2Q9BRK4 669 aa12.51□□□□□ -0.41
SS18-213ENST00000579640 ZNF408Q9H9D4 720 aa12.51□□□□□ -0.41
SS18-213ENST00000579640 GBA2Q9HCG7 927 aaPredicted RBP12.51□□□□□ -0.41
SS18-213ENST00000579640 SNCAIPQ9Y6H5 919 aa12.51□□□□□ -0.41
SS18-213ENST00000579640 A0A1W2PRG0 241 aa12.51□□□□□ -0.41
SS18-213ENST00000579640 F5H6K3 240 aa12.51□□□□□ -0.41
SS18-213ENST00000579640 CELF2O95319 508 aaKnown RBP12.51□□□□□ -0.41
SS18-213ENST00000579640 PDHBP11177 359 aa12.51□□□□□ -0.41
SS18-213ENST00000579640 SLC4A3P48751 1232 aa12.51□□□□□ -0.41
SS18-213ENST00000579640 USP14P54578 494 aa12.51□□□□□ -0.41
SS18-213ENST00000579640 KLRC3Q07444 240 aa12.51□□□□□ -0.41
SS18-213ENST00000579640 GPATCH4Q5T3I0 446 aaKnown RBP12.51□□□□□ -0.41
SS18-213ENST00000579640 SLFN13Q68D06 897 aa12.51□□□□□ -0.41
SS18-213ENST00000579640 CCDC144CPQ8IYA2 1237 aa12.51□□□□□ -0.41
SS18-213ENST00000579640 ZNF280CQ8ND82 737 aa12.51□□□□□ -0.41
SS18-213ENST00000579640 RBM46Q8TBY0 533 aaKnown RBP12.51□□□□□ -0.41
SS18-213ENST00000579640 ACER1Q8TDN7 264 aa12.51□□□□□ -0.41
SS18-213ENST00000579640 GMCL1Q96IK5 515 aa12.51□□□□□ -0.41
SS18-213ENST00000579640 FEZ1Q99689 392 aa12.51□□□□□ -0.41
SS18-213ENST00000579640 KIAA1683Q9H0B3 1180 aa12.51□□□□□ -0.41
SS18-213ENST00000579640 VCPKMTQ9H867 229 aa12.51□□□□□ -0.41
SS18-213ENST00000579640 NCOA5Q9HCD5 579 aaKnown RBP12.51□□□□□ -0.41
SS18-213ENST00000579640 FAM217BQ9NTX9 383 aaPredicted RBP12.51□□□□□ -0.41
SS18-213ENST00000579640 PALM3A6NDB9 673 aaPredicted RBP12.5□□□□□ -0.41
SS18-213ENST00000579640 USP17L10C9JJH3 530 aa12.5□□□□□ -0.41
SS18-213ENST00000579640 TOMM70O94826 608 aa12.5□□□□□ -0.41
SS18-213ENST00000579640 IFNAR1P17181 557 aa12.5□□□□□ -0.41
SS18-213ENST00000579640 SMARCA1P28370 1054 aa12.5□□□□□ -0.41
SS18-213ENST00000579640 CDC27P30260 824 aa12.5□□□□□ -0.41
SS18-213ENST00000579640 ADD1P35611 737 aaKnown RBP12.5□□□□□ -0.41
SS18-213ENST00000579640 ECE1P42892 770 aa12.5□□□□□ -0.41
SS18-213ENST00000579640 HMGN5P82970 282 aaKnown RBP12.5□□□□□ -0.41
SS18-213ENST00000579640 PPATQ06203 517 aa12.5□□□□□ -0.41
SS18-213ENST00000579640 ERO1BQ86YB8 467 aa12.5□□□□□ -0.41
SS18-213ENST00000579640 CWC22Q9HCG8 908 aaKnown RBP12.5□□□□□ -0.41
SS18-213ENST00000579640 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.5□□□□□ -0.41
SS18-213ENST00000579640 MAD2L2Q9UI95 211 aa12.5□□□□□ -0.41
SS18-213ENST00000579640 SMC3Q9UQE7 1217 aa12.5□□□□□ -0.41
SS18-213ENST00000579640 ZHX2Q9Y6X8 837 aa12.5□□□□□ -0.41
SS18-213ENST00000579640 PHIPQ8WWQ0 1821 aa12.5□□□□□ -0.41
SS18-213ENST00000579640 SPDYE5A6NIY4 337 aa12.49□□□□□ -0.41
SS18-213ENST00000579640 C19orf81C9J6K1 198 aa12.49□□□□□ -0.41
SS18-213ENST00000579640 NDUFB10O96000 172 aa12.49□□□□□ -0.41
SS18-213ENST00000579640 SLC1A4P43007 532 aa12.49□□□□□ -0.41
SS18-213ENST00000579640 ZNF543Q08ER8 600 aa12.49□□□□□ -0.41
SS18-213ENST00000579640 NTRK3Q16288 839 aa12.49□□□□□ -0.41
SS18-213ENST00000579640 TMTC3Q6ZXV5 915 aa12.49□□□□□ -0.41
SS18-213ENST00000579640 MOB2Q70IA6 237 aa12.49□□□□□ -0.41
SS18-213ENST00000579640 NSUN7Q8NE18 718 aaKnown RBP12.49□□□□□ -0.41
SS18-213ENST00000579640 SMARCC2Q8TAQ2 1214 aa12.49□□□□□ -0.41
SS18-213ENST00000579640 LPAR1Q92633 364 aa12.49□□□□□ -0.41
SS18-213ENST00000579640 KIF3AQ9Y496 699 aa12.49□□□□□ -0.41
SS18-213ENST00000579640 PASKQ96RG2 1323 aa12.49□□□□□ -0.41
SS18-213ENST00000579640 UBE2Q2LH0YL09 131 aa12.48□□□□□ -0.41
SS18-213ENST00000579640 BACE1P56817 501 aa12.48□□□□□ -0.41
SS18-213ENST00000579640 FMR1Q06787 632 aaKnown RBP eCLIP12.48□□□□□ -0.41
SS18-213ENST00000579640 SPP2Q13103 211 aa12.48□□□□□ -0.41
SS18-213ENST00000579640 USP17L2Q6R6M4 530 aa12.48□□□□□ -0.41
SS18-213ENST00000579640 CCDC84Q86UT8 332 aaPredicted RBP12.48□□□□□ -0.41
SS18-213ENST00000579640 TRIM22Q8IYM9 498 aa12.48□□□□□ -0.41
SS18-213ENST00000579640 ELP3Q9H9T3 547 aa12.48□□□□□ -0.41
SS18-213ENST00000579640 RBM27Q9P2N5 1060 aaKnown RBP12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms