RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 TRMT44Q8IYL2 757 aaKnown RBP12.04□□□□□ -0.48
SS18-207ENST00000577636 FAM227BQ96M60 508 aa12.04□□□□□ -0.48
SS18-207ENST00000577636 LBHD1Q9BQE6 289 aaPredicted RBP12.04□□□□□ -0.48
SS18-207ENST00000577636 WDR18Q9BV38 432 aa12.04□□□□□ -0.48
SS18-207ENST00000577636 LSG1Q9H089 658 aaKnown RBP12.04□□□□□ -0.48
SS18-207ENST00000577636 PORCNQ9H237 461 aa12.04□□□□□ -0.48
SS18-207ENST00000577636 SNRKQ9NRH2 765 aa12.04□□□□□ -0.48
SS18-207ENST00000577636 RBPJLQ9UBG7 517 aa12.04□□□□□ -0.48
SS18-207ENST00000577636 SAP30BPQ9UHR5 308 aaKnown RBP12.04□□□□□ -0.48
SS18-207ENST00000577636 PDS5AQ29RF7 1337 aaKnown RBP12.04□□□□□ -0.48
SS18-207ENST00000577636 CCDC171Q6TFL3 1326 aa12.04□□□□□ -0.48
SS18-207ENST00000577636 PHIPQ8WWQ0 1821 aa12.04□□□□□ -0.48
SS18-207ENST00000577636 C19orf81C9J6K1 198 aa12.03□□□□□ -0.48
SS18-207ENST00000577636 K7ELQ4 463 aaPredicted RBP12.03□□□□□ -0.48
SS18-207ENST00000577636 BAG3O95817 575 aa12.03□□□□□ -0.48
SS18-207ENST00000577636 ASNSP08243 561 aa12.03□□□□□ -0.48
SS18-207ENST00000577636 HOXA7P31268 230 aaPredicted RBP12.03□□□□□ -0.48
SS18-207ENST00000577636 LHX8Q68G74 356 aa12.03□□□□□ -0.48
SS18-207ENST00000577636 NAA16Q6N069 864 aaPredicted RBP12.03□□□□□ -0.48
SS18-207ENST00000577636 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.03□□□□□ -0.48
SS18-207ENST00000577636 EDC3Q96F86 508 aaKnown RBP12.03□□□□□ -0.48
SS18-207ENST00000577636 KIF2CQ99661 725 aa12.03□□□□□ -0.48
SS18-207ENST00000577636 DHX36Q9H2U1 1008 aaKnown RBP12.03□□□□□ -0.48
SS18-207ENST00000577636 PALD1Q9ULE6 856 aa12.03□□□□□ -0.48
SS18-207ENST00000577636 PTPRFP10586 1907 aa12.03□□□□□ -0.48
SS18-207ENST00000577636 A0A0D9SFI3 127 aa12.02□□□□□ -0.49
SS18-207ENST00000577636 ZBTB22O15209 634 aa12.02□□□□□ -0.49
SS18-207ENST00000577636 COL6A1P12109 1028 aa12.02□□□□□ -0.49
SS18-207ENST00000577636 PSMA5P28066 241 aa12.02□□□□□ -0.49
SS18-207ENST00000577636 ARID4AP29374 1257 aaPredicted RBP12.02□□□□□ -0.49
SS18-207ENST00000577636 HOXD11P31277 338 aaPredicted RBP12.02□□□□□ -0.49
SS18-207ENST00000577636 MCAMP43121 646 aa12.02□□□□□ -0.49
SS18-207ENST00000577636 ZAP70P43403 619 aa12.02□□□□□ -0.49
SS18-207ENST00000577636 NEK4P51957 841 aa12.02□□□□□ -0.49
SS18-207ENST00000577636 FOXP4Q8IVH2 680 aaPredicted RBP12.02□□□□□ -0.49
SS18-207ENST00000577636 U3KPZ7 1027 aaPredicted RBP12.02□□□□□ -0.49
SS18-207ENST00000577636 A0A0C4DFX4 3053 aa12.02□□□□□ -0.49
SS18-207ENST00000577636 DDX60LQ5H9U9 1706 aaKnown RBP12.01□□□□□ -0.49
SS18-207ENST00000577636 MYCNP04198 464 aaPredicted RBP12.01□□□□□ -0.49
SS18-207ENST00000577636 ATP2B2Q01814 1243 aa12.01□□□□□ -0.49
SS18-207ENST00000577636 MAP3K12Q12852 859 aa12.01□□□□□ -0.49
SS18-207ENST00000577636 MAP2K5Q13163 448 aa12.01□□□□□ -0.49
SS18-207ENST00000577636 KRT32Q14532 448 aa12.01□□□□□ -0.49
SS18-207ENST00000577636 MORN1Q5T089 497 aa12.01□□□□□ -0.49
SS18-207ENST00000577636 MFSD14CQ5VZR4 134 aa12.01□□□□□ -0.49
SS18-207ENST00000577636 USP17L2Q6R6M4 530 aa12.01□□□□□ -0.49
SS18-207ENST00000577636 USP6NLQ92738 828 aa12.01□□□□□ -0.49
SS18-207ENST00000577636 GUCD1Q96NT3 240 aa12.01□□□□□ -0.49
SS18-207ENST00000577636 FEZ1Q99689 392 aa12.01□□□□□ -0.49
SS18-207ENST00000577636 APBA2Q99767 749 aa12.01□□□□□ -0.49
SS18-207ENST00000577636 DNAJC18Q9H819 358 aa12.01□□□□□ -0.49
SS18-207ENST00000577636 EMILIN3Q9NT22 766 aa12.01□□□□□ -0.49
SS18-207ENST00000577636 PRKAG2Q9UGJ0 569 aa12.01□□□□□ -0.49
SS18-207ENST00000577636 POTEB2H3BUK9 544 aa12□□□□□ -0.49
SS18-207ENST00000577636 GH2P01242 217 aa12□□□□□ -0.49
SS18-207ENST00000577636 HLA-DOAP06340 250 aa12□□□□□ -0.49
SS18-207ENST00000577636 PLCG2P16885 1265 aa12□□□□□ -0.49
SS18-207ENST00000577636 ZMYM1Q5SVZ6 1142 aa12□□□□□ -0.49
SS18-207ENST00000577636 MAP4K1Q92918 833 aa12□□□□□ -0.49
SS18-207ENST00000577636 IL17RAQ96F46 866 aa12□□□□□ -0.49
SS18-207ENST00000577636 FLRT1Q9NZU1 646 aa12□□□□□ -0.49
SS18-207ENST00000577636 ZBTB21Q9ULJ3 1066 aa12□□□□□ -0.49
SS18-207ENST00000577636 RBM8AQ9Y5S9 174 aaKnown RBP12□□□□□ -0.49
SS18-207ENST00000577636 IDH1O75874 414 aaKnown RBP11.99□□□□□ -0.49
SS18-207ENST00000577636 DYNLL1P63167 89 aaKnown RBP11.99□□□□□ -0.49
SS18-207ENST00000577636 RAB3GAP1Q15042 981 aa11.99□□□□□ -0.49
SS18-207ENST00000577636 ZNF697Q5TEC3 545 aa11.99□□□□□ -0.49
SS18-207ENST00000577636 ANO1Q5XXA6 986 aa11.99□□□□□ -0.49
SS18-207ENST00000577636 POTEEQ6S8J3 1075 aa11.99□□□□□ -0.49
SS18-207ENST00000577636 GTF3C2Q8WUA4 911 aaPredicted RBP11.99□□□□□ -0.49
SS18-207ENST00000577636 APPBP2Q92624 585 aa11.99□□□□□ -0.49
SS18-207ENST00000577636 IL25Q9H293 177 aa11.99□□□□□ -0.49
SS18-207ENST00000577636 SLKQ9H2G2 1235 aaPredicted RBP11.99□□□□□ -0.49
SS18-207ENST00000577636 PRDM5Q9NQX1 630 aaPredicted RBP11.99□□□□□ -0.49
SS18-207ENST00000577636 DDX20Q9UHI6 824 aaKnown RBP11.99□□□□□ -0.49
SS18-207ENST00000577636 CTNNA3Q9UI47 895 aa11.99□□□□□ -0.49
SS18-207ENST00000577636 ATP11BQ9Y2G3 1177 aa11.99□□□□□ -0.49
SS18-207ENST00000577636 SNX14Q9Y5W7 946 aa11.99□□□□□ -0.49
SS18-207ENST00000577636 FLT1P17948 1338 aa11.99□□□□□ -0.49
SS18-207ENST00000577636 USP17L15C9J2P7 530 aa11.98□□□□□ -0.49
SS18-207ENST00000577636 USP17L13C9JLJ4 530 aa11.98□□□□□ -0.49
SS18-207ENST00000577636 USP17L11C9JVI0 530 aa11.98□□□□□ -0.49
SS18-207ENST00000577636 USP17L18D6R9N7 530 aa11.98□□□□□ -0.49
SS18-207ENST00000577636 USP17L22D6RA61 530 aa11.98□□□□□ -0.49
SS18-207ENST00000577636 USP17L17D6RBQ6 530 aa11.98□□□□□ -0.49
SS18-207ENST00000577636 USP17L19D6RCP7 530 aa11.98□□□□□ -0.49
SS18-207ENST00000577636 USP17L20D6RJB6 530 aa11.98□□□□□ -0.49
SS18-207ENST00000577636 CNMDO75829 334 aa11.98□□□□□ -0.49
SS18-207ENST00000577636 PTPREP23469 700 aa11.98□□□□□ -0.49
SS18-207ENST00000577636 CYP2C19P33261 490 aa11.98□□□□□ -0.49
SS18-207ENST00000577636 USP5P45974 858 aa11.98□□□□□ -0.49
SS18-207ENST00000577636 RTP1P59025 263 aa11.98□□□□□ -0.49
SS18-207ENST00000577636 CCNA1P78396 465 aa11.98□□□□□ -0.49
SS18-207ENST00000577636 PTH1RQ03431 593 aa11.98□□□□□ -0.49
SS18-207ENST00000577636 USP17L24Q0WX57 530 aa11.98□□□□□ -0.49
SS18-207ENST00000577636 GJC2Q5T442 439 aaPredicted RBP11.98□□□□□ -0.49
SS18-207ENST00000577636 SLC9C2Q5TAH2 1124 aa11.98□□□□□ -0.49
SS18-207ENST00000577636 CREB3L3Q68CJ9 461 aa11.98□□□□□ -0.49
SS18-207ENST00000577636 ADGRA1Q86SQ6 560 aa11.98□□□□□ -0.49
SS18-207ENST00000577636 SPRYD3Q8NCJ5 442 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms