RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 RTL9Q8NET4 1388 aa19.36■□□□□ 0.69
VPS53-215ENST00000573028 PHF20Q9BVI0 1012 aa19.36■□□□□ 0.69
VPS53-215ENST00000573028 NIP7Q9Y221 180 aaKnown RBP eCLIP19.36■□□□□ 0.69
VPS53-215ENST00000573028 CTAGE9A4FU28 777 aa19.35■□□□□ 0.69
VPS53-215ENST00000573028 KRT31Q15323 416 aa19.35■□□□□ 0.69
VPS53-215ENST00000573028 EEF2KMTQ96G04 330 aa19.35■□□□□ 0.69
VPS53-215ENST00000573028 CTAGE1Q96RT6 745 aa19.35■□□□□ 0.69
VPS53-215ENST00000573028 RNF225M0QZC1 329 aaPredicted RBP19.35■□□□□ 0.69
VPS53-215ENST00000573028 VEGFAP15692 232 aaPredicted RBP19.35■□□□□ 0.69
VPS53-215ENST00000573028 GSDMAQ96QA5 445 aa19.35■□□□□ 0.69
VPS53-215ENST00000573028 CDC23Q9UJX2 597 aa19.35■□□□□ 0.69
VPS53-215ENST00000573028 LMAN1P49257 510 aa19.34■□□□□ 0.69
VPS53-215ENST00000573028 CNGA4Q8IV77 575 aa19.34■□□□□ 0.69
VPS53-215ENST00000573028 PLIN2Q99541 437 aa19.34■□□□□ 0.69
VPS53-215ENST00000573028 DCCP43146 1447 aa19.34■□□□□ 0.69
VPS53-215ENST00000573028 IL6STP40189 918 aaPredicted RBP19.34■□□□□ 0.69
VPS53-215ENST00000573028 CDKAL1Q5VV42 579 aa19.34■□□□□ 0.69
VPS53-215ENST00000573028 FERMT2Q96AC1 680 aa19.34■□□□□ 0.69
VPS53-215ENST00000573028 ZFP91Q96JP5 570 aaPredicted RBP19.34■□□□□ 0.69
VPS53-215ENST00000573028 USP17L12C9JPN9 530 aa19.34■□□□□ 0.69
VPS53-215ENST00000573028 USP17L21D6R901 530 aa19.34■□□□□ 0.69
VPS53-215ENST00000573028 ACSBG1Q96GR2 724 aa19.34■□□□□ 0.69
VPS53-215ENST00000573028 PNKPQ96T60 521 aa19.34■□□□□ 0.69
VPS53-215ENST00000573028 JAG2Q9Y219 1238 aa19.34■□□□□ 0.69
VPS53-215ENST00000573028 XDHP47989 1333 aa19.33■□□□□ 0.69
VPS53-215ENST00000573028 ERVV-1B6SEH8 477 aa19.33■□□□□ 0.69
VPS53-215ENST00000573028 GPS2Q13227 327 aa19.33■□□□□ 0.69
VPS53-215ENST00000573028 IQUBQ8NA54 791 aa19.33■□□□□ 0.69
VPS53-215ENST00000573028 PDE11AQ9HCR9 933 aa19.33■□□□□ 0.69
VPS53-215ENST00000573028 H3BQF6 201 aa19.33■□□□□ 0.68
VPS53-215ENST00000573028 ADAMTS3O15072 1205 aa19.33■□□□□ 0.68
VPS53-215ENST00000573028 KRT9P35527 623 aa19.33■□□□□ 0.68
VPS53-215ENST00000573028 GDAQ9Y2T3 454 aa19.33■□□□□ 0.68
VPS53-215ENST00000573028 PRPF3O43395 683 aaKnown RBP19.32■□□□□ 0.68
VPS53-215ENST00000573028 ATP8B1O43520 1251 aa19.32■□□□□ 0.68
VPS53-215ENST00000573028 ERVK-24P63145 666 aa19.32■□□□□ 0.68
VPS53-215ENST00000573028 MAPK8IP2Q13387 824 aaPredicted RBP19.32■□□□□ 0.68
VPS53-215ENST00000573028 SH3RF1Q7Z6J0 888 aa19.32■□□□□ 0.68
VPS53-215ENST00000573028 CTCFLQ8NI51 663 aaPredicted RBP19.32■□□□□ 0.68
VPS53-215ENST00000573028 NAA15Q9BXJ9 866 aaKnown RBP19.32■□□□□ 0.68
VPS53-215ENST00000573028 GUCA1BQ9UMX6 200 aa19.32■□□□□ 0.68
VPS53-215ENST00000573028 CCDC151A5D8V7 595 aa19.32■□□□□ 0.68
VPS53-215ENST00000573028 PHACTR2O75167 634 aa19.32■□□□□ 0.68
VPS53-215ENST00000573028 CEP112Q8N8E3 955 aa19.32■□□□□ 0.68
VPS53-215ENST00000573028 NELFBQ8WX92 580 aa19.32■□□□□ 0.68
VPS53-215ENST00000573028 ANKZF1Q9H8Y5 726 aa19.32■□□□□ 0.68
VPS53-215ENST00000573028 UBXN1Q04323 297 aa19.32■□□□□ 0.68
VPS53-215ENST00000573028 FUT2Q10981 343 aa19.32■□□□□ 0.68
VPS53-215ENST00000573028 RASGRP2Q7LDG7 609 aa19.32■□□□□ 0.68
VPS53-215ENST00000573028 ANKRD20A12PQ8NF67 263 aa19.32■□□□□ 0.68
VPS53-215ENST00000573028 VPS18Q9P253 973 aa19.32■□□□□ 0.68
VPS53-215ENST00000573028 TRIM10Q9UDY6 481 aa19.32■□□□□ 0.68
VPS53-215ENST00000573028 TFR2Q9UP52 801 aa19.32■□□□□ 0.68
VPS53-215ENST00000573028 EXOC5O00471 708 aa19.31■□□□□ 0.68
VPS53-215ENST00000573028 PBX1P40424 430 aa19.31■□□□□ 0.68
VPS53-215ENST00000573028 TROAPQ12815 778 aa19.31■□□□□ 0.68
VPS53-215ENST00000573028 SRBD1Q8N5C6 995 aaKnown RBP19.31■□□□□ 0.68
VPS53-215ENST00000573028 RASGRP4Q8TDF6 673 aa19.31■□□□□ 0.68
VPS53-215ENST00000573028 COPB1P53618 953 aaKnown RBP19.31■□□□□ 0.68
VPS53-215ENST00000573028 PAK1Q13153 545 aa19.31■□□□□ 0.68
VPS53-215ENST00000573028 CHP1Q99653 195 aa19.31■□□□□ 0.68
VPS53-215ENST00000573028 ABCB6Q9NP58 842 aa19.31■□□□□ 0.68
VPS53-215ENST00000573028 TOGARAM1Q9Y4F4 1720 aa19.31■□□□□ 0.68
VPS53-215ENST00000573028 TRIM49BA6NDI0 452 aa19.3■□□□□ 0.68
VPS53-215ENST00000573028 KCNJ18B7U540 433 aa19.3■□□□□ 0.68
VPS53-215ENST00000573028 ATP6V1AP38606 617 aa19.3■□□□□ 0.68
VPS53-215ENST00000573028 KCNJ12Q14500 433 aa19.3■□□□□ 0.68
VPS53-215ENST00000573028 NCAPH2Q6IBW4 605 aa19.3■□□□□ 0.68
VPS53-215ENST00000573028 ABHD10Q9NUJ1 306 aa19.3■□□□□ 0.68
VPS53-215ENST00000573028 PAPPAQ13219 1627 aa19.3■□□□□ 0.68
VPS53-215ENST00000573028 NID2Q14112 1375 aa19.3■□□□□ 0.68
VPS53-215ENST00000573028 ENC1O14682 589 aa19.3■□□□□ 0.68
VPS53-215ENST00000573028 NAPGQ99747 312 aaPredicted RBP19.3■□□□□ 0.68
VPS53-215ENST00000573028 GNL3LQ9NVN8 582 aaKnown RBP19.3■□□□□ 0.68
VPS53-215ENST00000573028 ADAM21Q9UKJ8 722 aa19.3■□□□□ 0.68
VPS53-215ENST00000573028 LRP6O75581 1613 aa19.3■□□□□ 0.68
VPS53-215ENST00000573028 BRD3Q15059 726 aa19.3■□□□□ 0.68
VPS53-215ENST00000573028 BICDL1Q6ZP65 573 aa19.3■□□□□ 0.68
VPS53-215ENST00000573028 MTRQ99707 1265 aa19.3■□□□□ 0.68
VPS53-215ENST00000573028 CTAGE15A4D2H0 777 aa19.29■□□□□ 0.68
VPS53-215ENST00000573028 N4BP1O75113 896 aaKnown RBP19.29■□□□□ 0.68
VPS53-215ENST00000573028 BMP15O95972 392 aa19.29■□□□□ 0.68
VPS53-215ENST00000573028 CTAGE8P0CG41 777 aa19.29■□□□□ 0.68
VPS53-215ENST00000573028 IRX5P78411 483 aaPredicted RBP19.29■□□□□ 0.68
VPS53-215ENST00000573028 TMTC3Q6ZXV5 915 aa19.29■□□□□ 0.68
VPS53-215ENST00000573028 CTAGE6Q86UF2 777 aa19.29■□□□□ 0.68
VPS53-215ENST00000573028 TMTC1Q8IUR5 882 aa19.29■□□□□ 0.68
VPS53-215ENST00000573028 CTAGE4Q8IX94 777 aa19.29■□□□□ 0.68
VPS53-215ENST00000573028 TXLNBQ8N3L3 684 aa19.29■□□□□ 0.68
VPS53-215ENST00000573028 GPKOWQ92917 476 aaPredicted RBP eCLIP19.29■□□□□ 0.68
VPS53-215ENST00000573028 TTF2Q9UNY4 1162 aaKnown RBP19.29■□□□□ 0.68
VPS53-215ENST00000573028 STRCP1A6NGW2 1772 aa19.29■□□□□ 0.68
VPS53-215ENST00000573028 CHD4Q14839 1912 aa19.29■□□□□ 0.68
VPS53-215ENST00000573028 FAM193AP78312 1265 aa19.29■□□□□ 0.68
VPS53-215ENST00000573028 ATP2C1P98194 919 aaPredicted RBP19.29■□□□□ 0.68
VPS53-215ENST00000573028 CCDC102AQ96A19 550 aa19.29■□□□□ 0.68
VPS53-215ENST00000573028 RIOK1Q9BRS2 568 aaKnown RBP19.29■□□□□ 0.68
VPS53-215ENST00000573028 CYP2D6P10635 497 aa19.29■□□□□ 0.68
VPS53-215ENST00000573028 CRKLP46109 303 aaKnown RBP19.29■□□□□ 0.68
VPS53-215ENST00000573028 NPY5RQ15761 445 aa19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms