RNA–Protein interactions for RNA: ENST00000572750.1

CHD3-215, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 750 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-215ENST00000572750 ZNF213O14771 459 aa18.73■□□□□ 0.59
CHD3-215ENST00000572750 ORC4O43929 436 aa18.73■□□□□ 0.59
CHD3-215ENST00000572750 RANBP6O60518 1105 aaKnown RBP18.73■□□□□ 0.59
CHD3-215ENST00000572750 VCAM1P19320 739 aa18.73■□□□□ 0.59
CHD3-215ENST00000572750 USP14P54578 494 aa18.73■□□□□ 0.59
CHD3-215ENST00000572750 TFAP4Q01664 338 aa18.73■□□□□ 0.59
CHD3-215ENST00000572750 IMMTQ16891 758 aaKnown RBP18.73■□□□□ 0.59
CHD3-215ENST00000572750 SLC17A8Q8NDX2 589 aa18.73■□□□□ 0.59
CHD3-215ENST00000572750 STAG1Q8WVM7 1258 aa18.73■□□□□ 0.59
CHD3-215ENST00000572750 CEP95Q96GE4 821 aa18.73■□□□□ 0.59
CHD3-215ENST00000572750 C12orf42Q96LP6 360 aa18.73■□□□□ 0.59
CHD3-215ENST00000572750 SLC45A1Q9Y2W3 748 aa18.73■□□□□ 0.59
CHD3-215ENST00000572750 TSPY2A6NKD2 308 aa18.72■□□□□ 0.59
CHD3-215ENST00000572750 TLR2O60603 784 aa18.72■□□□□ 0.59
CHD3-215ENST00000572750 FGRP09769 529 aa18.72■□□□□ 0.59
CHD3-215ENST00000572750 KIAA1755Q5JYT7 1200 aa18.72■□□□□ 0.59
CHD3-215ENST00000572750 AKNAD1Q5T1N1 836 aa18.72■□□□□ 0.59
CHD3-215ENST00000572750 NKX2-3Q8TAU0 364 aa18.72■□□□□ 0.59
CHD3-215ENST00000572750 CPA4Q9UI42 421 aa18.72■□□□□ 0.59
CHD3-215ENST00000572750 CTNNA3Q9UI47 895 aa18.72■□□□□ 0.59
CHD3-215ENST00000572750 NMT2O60551 498 aa18.71■□□□□ 0.59
CHD3-215ENST00000572750 CASC1Q6TDU7 716 aa18.71■□□□□ 0.59
CHD3-215ENST00000572750 MFSD6Q6ZSS7 791 aa18.71■□□□□ 0.59
CHD3-215ENST00000572750 SPICE1Q8N0Z3 855 aa18.71■□□□□ 0.59
CHD3-215ENST00000572750 NEDD1Q8NHV4 660 aa18.71■□□□□ 0.59
CHD3-215ENST00000572750 SMCR8Q8TEV9 937 aaPredicted RBP18.71■□□□□ 0.59
CHD3-215ENST00000572750 LSG1Q9H089 658 aaKnown RBP18.71■□□□□ 0.59
CHD3-215ENST00000572750 ASCC2Q9H1I8 757 aaPredicted RBP18.71■□□□□ 0.59
CHD3-215ENST00000572750 SH2D4AQ9H788 454 aa18.71■□□□□ 0.59
CHD3-215ENST00000572750 ANO2Q9NQ90 1003 aa18.71■□□□□ 0.59
CHD3-215ENST00000572750 PNMA3Q9UL41 463 aa18.71■□□□□ 0.59
CHD3-215ENST00000572750 TMX2Q9Y320 296 aa18.71■□□□□ 0.59
CHD3-215ENST00000572750 A0A0G2JMZ2 1700 aa18.71■□□□□ 0.59
CHD3-215ENST00000572750 IRX3P78415 501 aaPredicted RBP18.7■□□□□ 0.58
CHD3-215ENST00000572750 PABPC4Q13310 644 aaKnown RBP eCLIP18.7■□□□□ 0.58
CHD3-215ENST00000572750 KIAA1211Q6ZU35 1233 aa18.7■□□□□ 0.58
CHD3-215ENST00000572750 LRRC47Q8N1G4 583 aaKnown RBP18.7■□□□□ 0.58
CHD3-215ENST00000572750 ARMC5Q96C12 935 aa18.7■□□□□ 0.58
CHD3-215ENST00000572750 RNF41Q9H4P4 317 aaPredicted RBP18.7■□□□□ 0.58
CHD3-215ENST00000572750 RPAP3Q9H6T3 665 aaPredicted RBP18.7■□□□□ 0.58
CHD3-215ENST00000572750 MTMR4Q9NYA4 1195 aa18.7■□□□□ 0.58
CHD3-215ENST00000572750 RBM8AQ9Y5S9 174 aaKnown RBP18.7■□□□□ 0.58
CHD3-215ENST00000572750 U3KPZ7 1027 aaPredicted RBP18.7■□□□□ 0.58
CHD3-215ENST00000572750 RLFQ13129 1914 aa18.7■□□□□ 0.58
CHD3-215ENST00000572750 RAD21O60216 631 aa18.69■□□□□ 0.58
CHD3-215ENST00000572750 PCP11498 1178 aaKnown RBP18.69■□□□□ 0.58
CHD3-215ENST00000572750 VCPKMTQ9H867 229 aa18.69■□□□□ 0.58
CHD3-215ENST00000572750 IL17RBQ9NRM6 502 aa18.69■□□□□ 0.58
CHD3-215ENST00000572750 TAF6LQ9Y6J9 622 aa18.69■□□□□ 0.58
CHD3-215ENST00000572750 MGAMO43451 1857 aa18.69■□□□□ 0.58
CHD3-215ENST00000572750 VCANP13611 3396 aa18.68■□□□□ 0.58
CHD3-215ENST00000572750 ECM2O94769 699 aaPredicted RBP18.68■□□□□ 0.58
CHD3-215ENST00000572750 TTLL1O95922 423 aa18.68■□□□□ 0.58
CHD3-215ENST00000572750 CYP21A2P08686 494 aa18.68■□□□□ 0.58
CHD3-215ENST00000572750 OSBPP22059 807 aa18.68■□□□□ 0.58
CHD3-215ENST00000572750 HOXA7P31268 230 aaPredicted RBP18.68■□□□□ 0.58
CHD3-215ENST00000572750 C17orf99Q6UX52 265 aa18.68■□□□□ 0.58
CHD3-215ENST00000572750 CD99L2Q8TCZ2 262 aa18.68■□□□□ 0.58
CHD3-215ENST00000572750 MAP4K1Q92918 833 aa18.68■□□□□ 0.58
CHD3-215ENST00000572750 TANGO6Q9C0B7 1094 aa18.68■□□□□ 0.58
CHD3-215ENST00000572750 GOPCQ9HD26 462 aa18.68■□□□□ 0.58
CHD3-215ENST00000572750 NYAP2Q9P242 653 aa18.68■□□□□ 0.58
CHD3-215ENST00000572750 CLIP2Q9UDT6 1046 aa18.68■□□□□ 0.58
CHD3-215ENST00000572750 STX8Q9UNK0 236 aa18.68■□□□□ 0.58
CHD3-215ENST00000572750 PTPN22Q9Y2R2 807 aa18.68■□□□□ 0.58
CHD3-215ENST00000572750 B4E1Z4 1266 aa18.67■□□□□ 0.58
CHD3-215ENST00000572750 SP3Q02447 781 aa18.67■□□□□ 0.58
CHD3-215ENST00000572750 LPAR1Q92633 364 aa18.67■□□□□ 0.58
CHD3-215ENST00000572750 USP17L15C9J2P7 530 aa18.66■□□□□ 0.58
CHD3-215ENST00000572750 USP17L13C9JLJ4 530 aa18.66■□□□□ 0.58
CHD3-215ENST00000572750 USP17L11C9JVI0 530 aa18.66■□□□□ 0.58
CHD3-215ENST00000572750 USP17L18D6R9N7 530 aa18.66■□□□□ 0.58
CHD3-215ENST00000572750 USP17L22D6RA61 530 aa18.66■□□□□ 0.58
CHD3-215ENST00000572750 USP17L17D6RBQ6 530 aa18.66■□□□□ 0.58
CHD3-215ENST00000572750 USP17L19D6RCP7 530 aa18.66■□□□□ 0.58
CHD3-215ENST00000572750 USP17L20D6RJB6 530 aa18.66■□□□□ 0.58
CHD3-215ENST00000572750 KDM4AO75164 1064 aa18.66■□□□□ 0.58
CHD3-215ENST00000572750 BCRP11274 1271 aa18.66■□□□□ 0.58
CHD3-215ENST00000572750 HERVK_113P62684 666 aa18.66■□□□□ 0.58
CHD3-215ENST00000572750 USP17L24Q0WX57 530 aa18.66■□□□□ 0.58
CHD3-215ENST00000572750 CHRDL2Q6WN34 429 aa18.66■□□□□ 0.58
CHD3-215ENST00000572750 ANKRD13CQ8N6S4 541 aa18.66■□□□□ 0.58
CHD3-215ENST00000572750 ESR2Q92731 530 aa18.66■□□□□ 0.58
CHD3-215ENST00000572750 NUP88Q99567 741 aaPredicted RBP18.66■□□□□ 0.58
CHD3-215ENST00000572750 P2RX7Q99572 595 aaKnown RBP18.66■□□□□ 0.58
CHD3-215ENST00000572750 RBM27Q9P2N5 1060 aaKnown RBP18.66■□□□□ 0.58
CHD3-215ENST00000572750 COL11A1P12107 1806 aaPredicted RBP18.65■□□□□ 0.58
CHD3-215ENST00000572750 WDR46O15213 610 aaKnown RBP18.65■□□□□ 0.58
CHD3-215ENST00000572750 PEX10O60683 326 aa18.65■□□□□ 0.58
CHD3-215ENST00000572750 NDUFB10O96000 172 aa18.65■□□□□ 0.58
CHD3-215ENST00000572750 CATSPERGQ6ZRH7 1159 aa18.65■□□□□ 0.58
CHD3-215ENST00000572750 STOX1Q6ZVD7 989 aa18.65■□□□□ 0.58
CHD3-215ENST00000572750 RASGRP2Q7LDG7 609 aa18.65■□□□□ 0.58
CHD3-215ENST00000572750 ERO1AQ96HE7 468 aa18.65■□□□□ 0.58
CHD3-215ENST00000572750 ZKSCAN3Q9BRR0 538 aa18.65■□□□□ 0.58
CHD3-215ENST00000572750 ARHGAP39Q9C0H5 1083 aa18.65■□□□□ 0.58
CHD3-215ENST00000572750 F5H6K3 240 aa18.64■□□□□ 0.57
CHD3-215ENST00000572750 LACTBP83111 547 aaPredicted RBP18.64■□□□□ 0.57
CHD3-215ENST00000572750 KLRC3Q07444 240 aa18.64■□□□□ 0.57
CHD3-215ENST00000572750 FAM83BQ5T0W9 1011 aa18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms