RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 RBM6P78332 1123 aaKnown RBP7.92□□□□□ -1.14
VPS53-212ENST00000572259 RBL2Q08999 1139 aa7.92□□□□□ -1.14
VPS53-212ENST00000572259 SETDB1Q15047 1291 aa7.92□□□□□ -1.14
VPS53-212ENST00000572259 TCEAL1Q15170 157 aa7.92□□□□□ -1.14
VPS53-212ENST00000572259 HGSNATQ68CP4 663 aa7.92□□□□□ -1.14
VPS53-212ENST00000572259 TTBK2Q6IQ55 1244 aa7.92□□□□□ -1.14
VPS53-212ENST00000572259 USP48Q86UV5 1035 aa7.92□□□□□ -1.14
VPS53-212ENST00000572259 TRIM11Q96F44 468 aa7.92□□□□□ -1.14
VPS53-212ENST00000572259 KLHDC7BQ96G42 594 aa7.92□□□□□ -1.14
VPS53-212ENST00000572259 RSRP1Q9BUV0 290 aa7.92□□□□□ -1.14
VPS53-212ENST00000572259 EMILIN2Q9BXX0 1053 aa7.92□□□□□ -1.14
VPS53-212ENST00000572259 TERF2IPQ9NYB0 399 aa7.92□□□□□ -1.14
VPS53-212ENST00000572259 NOP53Q9NZM5 478 aaKnown RBP7.92□□□□□ -1.14
VPS53-212ENST00000572259 ADAMTS8Q9UP79 889 aa7.92□□□□□ -1.14
VPS53-212ENST00000572259 MARF1Q9Y4F3 1742 aaKnown RBP7.92□□□□□ -1.14
VPS53-212ENST00000572259 A0A0A0MRY4 1105 aa7.91□□□□□ -1.14
VPS53-212ENST00000572259 MAFGO15525 162 aa7.91□□□□□ -1.14
VPS53-212ENST00000572259 PEX14O75381 377 aa7.91□□□□□ -1.14
VPS53-212ENST00000572259 MAP4K4O95819 1239 aaPredicted RBP7.91□□□□□ -1.14
VPS53-212ENST00000572259 GBP2P32456 591 aaPredicted RBP7.91□□□□□ -1.14
VPS53-212ENST00000572259 AP3B2Q13367 1082 aa7.91□□□□□ -1.14
VPS53-212ENST00000572259 PRRT3Q5FWE3 981 aa7.91□□□□□ -1.14
VPS53-212ENST00000572259 PCNX4Q63HM2 1172 aa7.91□□□□□ -1.14
VPS53-212ENST00000572259 ZNF746Q6NUN9 644 aaPredicted RBP7.91□□□□□ -1.14
VPS53-212ENST00000572259 SULF2Q8IWU5 870 aa7.91□□□□□ -1.14
VPS53-212ENST00000572259 CORO1BQ9BR76 489 aa7.91□□□□□ -1.14
VPS53-212ENST00000572259 TRIM56Q9BRZ2 755 aaKnown RBP7.91□□□□□ -1.14
VPS53-212ENST00000572259 UBA5Q9GZZ9 404 aa7.91□□□□□ -1.14
VPS53-212ENST00000572259 CBX8Q9HC52 389 aa7.91□□□□□ -1.14
VPS53-212ENST00000572259 FAN1Q9Y2M0 1017 aa7.91□□□□□ -1.14
VPS53-212ENST00000572259 CNTNAP5Q8WYK1 1306 aa7.91□□□□□ -1.14
VPS53-212ENST00000572259 USP47Q96K76 1375 aa7.91□□□□□ -1.14
VPS53-212ENST00000572259 TRPM3Q9HCF6 1732 aaPredicted RBP7.9□□□□□ -1.14
VPS53-212ENST00000572259 TOPAZ1Q8N9V7 1692 aa7.9□□□□□ -1.14
VPS53-212ENST00000572259 NINLQ9Y2I6 1382 aa7.9□□□□□ -1.14
VPS53-212ENST00000572259 TTC21AQ8NDW8 1320 aa7.9□□□□□ -1.14
VPS53-212ENST00000572259 MINDY4BA8MYZ0 360 aa7.9□□□□□ -1.14
VPS53-212ENST00000572259 PAGE1O75459 146 aa7.9□□□□□ -1.14
VPS53-212ENST00000572259 ARNTP27540 789 aa7.9□□□□□ -1.14
VPS53-212ENST00000572259 CD68P34810 354 aaPredicted RBP7.9□□□□□ -1.14
VPS53-212ENST00000572259 LIG3P49916 1009 aa7.9□□□□□ -1.14
VPS53-212ENST00000572259 NLRP12P59046 1061 aa7.9□□□□□ -1.14
VPS53-212ENST00000572259 LRRC14Q15048 493 aa7.9□□□□□ -1.14
VPS53-212ENST00000572259 POU4F3Q15319 338 aa7.9□□□□□ -1.14
VPS53-212ENST00000572259 DIEXFQ68CQ4 756 aaKnown RBP7.9□□□□□ -1.14
VPS53-212ENST00000572259 FBXO11Q86XK2 927 aa7.9□□□□□ -1.14
VPS53-212ENST00000572259 UNC5CLQ8IV45 518 aa7.9□□□□□ -1.14
VPS53-212ENST00000572259 SCARF2Q96GP6 870 aaPredicted RBP7.9□□□□□ -1.14
VPS53-212ENST00000572259 OSBPL2Q9H1P3 480 aa7.9□□□□□ -1.14
VPS53-212ENST00000572259 PRDM11Q9NQV5 511 aa7.9□□□□□ -1.14
VPS53-212ENST00000572259 KBTBD4Q9NVX7 518 aa7.9□□□□□ -1.14
VPS53-212ENST00000572259 CHPF2Q9P2E5 772 aa7.9□□□□□ -1.14
VPS53-212ENST00000572259 ALS2Q96Q42 1657 aa7.89□□□□□ -1.15
VPS53-212ENST00000572259 KTN1Q86UP2 1357 aaKnown RBP7.89□□□□□ -1.15
VPS53-212ENST00000572259 FAM181BA6NEQ2 426 aa7.89□□□□□ -1.15
VPS53-212ENST00000572259 F6X3S4 739 aa7.89□□□□□ -1.15
VPS53-212ENST00000572259 LORP23490 312 aaPredicted RBP7.89□□□□□ -1.15
VPS53-212ENST00000572259 RALBP1Q15311 655 aa7.89□□□□□ -1.15
VPS53-212ENST00000572259 ZNF394Q53GI3 561 aa7.89□□□□□ -1.15
VPS53-212ENST00000572259 NUTM2GQ5VZR2 741 aa7.89□□□□□ -1.15
VPS53-212ENST00000572259 SPTY2D1Q68D10 685 aaPredicted RBP7.89□□□□□ -1.15
VPS53-212ENST00000572259 ERMP1Q7Z2K6 904 aa7.89□□□□□ -1.15
VPS53-212ENST00000572259 ZNF654Q8IZM8 581 aa7.89□□□□□ -1.15
VPS53-212ENST00000572259 FMR1NBQ8N0W7 255 aaPredicted RBP7.89□□□□□ -1.15
VPS53-212ENST00000572259 GALNT11Q8NCW6 608 aa7.89□□□□□ -1.15
VPS53-212ENST00000572259 TMEM74Q96NL1 305 aa7.89□□□□□ -1.15
VPS53-212ENST00000572259 TESK2Q96S53 571 aa7.89□□□□□ -1.15
VPS53-212ENST00000572259 USP26Q9BXU7 913 aa7.89□□□□□ -1.15
VPS53-212ENST00000572259 COPRSQ9NQ92 184 aa7.89□□□□□ -1.15
VPS53-212ENST00000572259 CYP8B1Q9UNU6 501 aa7.89□□□□□ -1.15
VPS53-212ENST00000572259 USP6P35125 1406 aa7.88□□□□□ -1.15
VPS53-212ENST00000572259 FAM83GA6ND36 823 aa7.88□□□□□ -1.15
VPS53-212ENST00000572259 DEAF1O75398 565 aaPredicted RBP7.88□□□□□ -1.15
VPS53-212ENST00000572259 BMP6P22004 513 aa7.88□□□□□ -1.15
VPS53-212ENST00000572259 EVA1CP58658 441 aa7.88□□□□□ -1.15
VPS53-212ENST00000572259 RPS26P62854 115 aaKnown RBP7.88□□□□□ -1.15
VPS53-212ENST00000572259 HNRNPUQ00839 825 aaKnown RBP eCLIP7.88□□□□□ -1.15
VPS53-212ENST00000572259 JAZF1Q86VZ6 243 aa7.88□□□□□ -1.15
VPS53-212ENST00000572259 KCNH5Q8NCM2 988 aa7.88□□□□□ -1.15
VPS53-212ENST00000572259 ZC3H12CQ9C0D7 883 aaKnown RBP7.88□□□□□ -1.15
VPS53-212ENST00000572259 SLC12A5Q9H2X9 1139 aa7.88□□□□□ -1.15
VPS53-212ENST00000572259 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.88□□□□□ -1.15
VPS53-212ENST00000572259 PCDHGB7Q9Y5F8 929 aa7.88□□□□□ -1.15
VPS53-212ENST00000572259 COL4A3BPQ9Y5P4 624 aa7.88□□□□□ -1.15
VPS53-212ENST00000572259 TTC21BQ7Z4L5 1316 aa7.87□□□□□ -1.15
VPS53-212ENST00000572259 FAM229AH3BQW9 127 aa7.87□□□□□ -1.15
VPS53-212ENST00000572259 GCP02774 474 aa7.87□□□□□ -1.15
VPS53-212ENST00000572259 GSTP1P09211 210 aaKnown RBP7.87□□□□□ -1.15
VPS53-212ENST00000572259 MAOBP27338 520 aa7.87□□□□□ -1.15
VPS53-212ENST00000572259 DNAJA1P31689 397 aaKnown RBP7.87□□□□□ -1.15
VPS53-212ENST00000572259 LLGL2Q6P1M3 1020 aa7.87□□□□□ -1.15
VPS53-212ENST00000572259 AGMOQ6ZNB7 445 aa7.87□□□□□ -1.15
VPS53-212ENST00000572259 APBB1IPQ7Z5R6 666 aaPredicted RBP7.87□□□□□ -1.15
VPS53-212ENST00000572259 CCAR1Q8IX12 1150 aaKnown RBP7.87□□□□□ -1.15
VPS53-212ENST00000572259 PHC3Q8NDX5 983 aa7.87□□□□□ -1.15
VPS53-212ENST00000572259 BTG4Q9NY30 223 aa7.87□□□□□ -1.15
VPS53-212ENST00000572259 DDX41Q9UJV9 622 aaKnown RBP7.87□□□□□ -1.15
VPS53-212ENST00000572259 TLR6Q9Y2C9 796 aa7.87□□□□□ -1.15
VPS53-212ENST00000572259 CDK12Q9NYV4 1490 aaPredicted RBP7.87□□□□□ -1.15
VPS53-212ENST00000572259 AKAP12Q02952 1782 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms