RNA–Protein interactions for RNA: ENST00000570086.5

CMC2-222, Transcript of C-X9-C motif containing 2, human

TSL 3

Gene CMC2, Length 801 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CMC2-222	ENST00000570086	PTPRA	P18433	802 aa		18.38	■□□□□ 0.53
CMC2-222	ENST00000570086	YY1	P25490	414 aa		18.38	■□□□□ 0.53
CMC2-222	ENST00000570086	SCRN1	Q12765	414 aa		18.38	■□□□□ 0.53
CMC2-222	ENST00000570086	STK3	Q13188	491 aa		18.38	■□□□□ 0.53
CMC2-222	ENST00000570086	FANCB	Q8NB91	859 aa		18.38	■□□□□ 0.53
CMC2-222	ENST00000570086	SMC1B	Q8NDV3	1235 aa		18.38	■□□□□ 0.53
CMC2-222	ENST00000570086	GMCL1P1	Q8NEA9	526 aa		18.38	■□□□□ 0.53
CMC2-222	ENST00000570086	WDR18	Q9BV38	432 aa		18.38	■□□□□ 0.53
CMC2-222	ENST00000570086	RBM28	Q9NW13	759 aa	Known RBP	18.38	■□□□□ 0.53
CMC2-222	ENST00000570086	TMX2	Q9Y320	296 aa		18.38	■□□□□ 0.53
CMC2-222	ENST00000570086	PTPRF	P10586	1907 aa		18.38	■□□□□ 0.53
CMC2-222	ENST00000570086	MYH6	P13533	1939 aa		18.38	■□□□□ 0.53
CMC2-222	ENST00000570086	KIF5B	P33176	963 aa		18.37	■□□□□ 0.53
CMC2-222	ENST00000570086	VGLL4	Q14135	290 aa		18.37	■□□□□ 0.53
CMC2-222	ENST00000570086	GRM4	Q14833	912 aa		18.37	■□□□□ 0.53
CMC2-222	ENST00000570086	RTN1	Q16799	776 aa		18.37	■□□□□ 0.53
CMC2-222	ENST00000570086	LDLRAD1	Q5T700	205 aa		18.37	■□□□□ 0.53
CMC2-222	ENST00000570086	CCDC83	Q8IWF9	413 aa		18.37	■□□□□ 0.53
CMC2-222	ENST00000570086	LRRC47	Q8N1G4	583 aa	Known RBP	18.37	■□□□□ 0.53
CMC2-222	ENST00000570086	NECAB1	Q8N987	351 aa		18.37	■□□□□ 0.53
CMC2-222	ENST00000570086	CTCFL	Q8NI51	663 aa	Predicted RBP	18.37	■□□□□ 0.53
CMC2-222	ENST00000570086	NUP133	Q8WUM0	1156 aa		18.37	■□□□□ 0.53
CMC2-222	ENST00000570086	LLPH	Q9BRT6	129 aa	Known RBP	18.37	■□□□□ 0.53
CMC2-222	ENST00000570086	MYL10	Q9BUA6	226 aa		18.37	■□□□□ 0.53
CMC2-222	ENST00000570086	GBA2	Q9HCG7	927 aa	Predicted RBP	18.37	■□□□□ 0.53
CMC2-222	ENST00000570086	GOPC	Q9HD26	462 aa		18.37	■□□□□ 0.53
CMC2-222	ENST00000570086	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	18.37	■□□□□ 0.53
CMC2-222	ENST00000570086	SNCAIP	Q9Y6H5	919 aa		18.37	■□□□□ 0.53
CMC2-222	ENST00000570086	CELF2	O95319	508 aa	Known RBP	18.36	■□□□□ 0.53
CMC2-222	ENST00000570086	HSP90AA1	P07900	732 aa	Known RBP	18.36	■□□□□ 0.53
CMC2-222	ENST00000570086	SNHG28	P0DPA3	235 aa		18.36	■□□□□ 0.53
CMC2-222	ENST00000570086	GNAQ	P50148	359 aa		18.36	■□□□□ 0.53
CMC2-222	ENST00000570086	CCT2	P78371	535 aa	Known RBP	18.36	■□□□□ 0.53
CMC2-222	ENST00000570086	ST3GAL1	Q11201	340 aa		18.36	■□□□□ 0.53
CMC2-222	ENST00000570086	CPLX2	Q6PUV4	134 aa	Known RBP	18.36	■□□□□ 0.53
CMC2-222	ENST00000570086	C2orf69	Q8N8R5	385 aa		18.36	■□□□□ 0.53
CMC2-222	ENST00000570086	RBM46	Q8TBY0	533 aa	Known RBP	18.36	■□□□□ 0.53
CMC2-222	ENST00000570086	ZNF408	Q9H9D4	720 aa		18.36	■□□□□ 0.53
CMC2-222	ENST00000570086	PASK	Q96RG2	1323 aa		18.35	■□□□□ 0.53
CMC2-222	ENST00000570086		A0A1W2PRG0	241 aa		18.35	■□□□□ 0.53
CMC2-222	ENST00000570086	TOMM70	O94826	608 aa		18.35	■□□□□ 0.53
CMC2-222	ENST00000570086	PDHB	P11177	359 aa		18.35	■□□□□ 0.53
CMC2-222	ENST00000570086	RXRA	P19793	462 aa		18.35	■□□□□ 0.53
CMC2-222	ENST00000570086	FMR1	Q06787	632 aa	Known RBP eCLIP	18.35	■□□□□ 0.53
CMC2-222	ENST00000570086	ASPRV1	Q53RT3	343 aa		18.35	■□□□□ 0.53
CMC2-222	ENST00000570086	RAB11FIP4	Q86YS3	637 aa		18.35	■□□□□ 0.53
CMC2-222	ENST00000570086	ZNF280C	Q8ND82	737 aa		18.35	■□□□□ 0.53
CMC2-222	ENST00000570086	ACER1	Q8TDN7	264 aa		18.35	■□□□□ 0.53
CMC2-222	ENST00000570086	DCAF4	Q8WV16	495 aa		18.35	■□□□□ 0.53
CMC2-222	ENST00000570086	KIAA1683	Q9H0B3	1180 aa		18.35	■□□□□ 0.53
CMC2-222	ENST00000570086	VCPKMT	Q9H867	229 aa		18.35	■□□□□ 0.53
CMC2-222	ENST00000570086	FAM217B	Q9NTX9	383 aa	Predicted RBP	18.35	■□□□□ 0.53
CMC2-222	ENST00000570086	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	18.35	■□□□□ 0.53
CMC2-222	ENST00000570086		F5H6K3	240 aa		18.34	■□□□□ 0.53
CMC2-222	ENST00000570086	CPLX1	O14810	134 aa		18.34	■□□□□ 0.53
CMC2-222	ENST00000570086	CDKL5	O76039	1030 aa		18.34	■□□□□ 0.53
CMC2-222	ENST00000570086	PARP1	P09874	1014 aa	Known RBP	18.34	■□□□□ 0.53
CMC2-222	ENST00000570086	CDC27	P30260	824 aa		18.34	■□□□□ 0.53
CMC2-222	ENST00000570086	ECE1	P42892	770 aa		18.34	■□□□□ 0.53
CMC2-222	ENST00000570086	USP14	P54578	494 aa		18.34	■□□□□ 0.53
CMC2-222	ENST00000570086	KLRC3	Q07444	240 aa		18.34	■□□□□ 0.53
CMC2-222	ENST00000570086	SLFN13	Q68D06	897 aa		18.34	■□□□□ 0.53
CMC2-222	ENST00000570086	MOB2	Q70IA6	237 aa		18.34	■□□□□ 0.53
CMC2-222	ENST00000570086	ERO1B	Q86YB8	467 aa		18.34	■□□□□ 0.53
CMC2-222	ENST00000570086	CCDC144CP	Q8IYA2	1237 aa		18.34	■□□□□ 0.53
CMC2-222	ENST00000570086	GMCL1	Q96IK5	515 aa		18.34	■□□□□ 0.53
CMC2-222	ENST00000570086	FEZ1	Q99689	392 aa		18.34	■□□□□ 0.53
CMC2-222	ENST00000570086	LZTS2	Q9BRK4	669 aa		18.34	■□□□□ 0.53
CMC2-222	ENST00000570086	NCOA5	Q9HCD5	579 aa	Known RBP	18.34	■□□□□ 0.53
CMC2-222	ENST00000570086	ZHX2	Q9Y6X8	837 aa		18.34	■□□□□ 0.53
CMC2-222	ENST00000570086	PALM3	A6NDB9	673 aa	Predicted RBP	18.33	■□□□□ 0.52
CMC2-222	ENST00000570086	SPDYE5	A6NIY4	337 aa		18.33	■□□□□ 0.52
CMC2-222	ENST00000570086	C19orf81	C9J6K1	198 aa		18.33	■□□□□ 0.52
CMC2-222	ENST00000570086	USP17L10	C9JJH3	530 aa		18.33	■□□□□ 0.52
CMC2-222	ENST00000570086	UBE2Q2L	H0YL09	131 aa		18.33	■□□□□ 0.52
CMC2-222	ENST00000570086	PPAT	Q06203	517 aa		18.33	■□□□□ 0.52
CMC2-222	ENST00000570086	GPATCH4	Q5T3I0	446 aa	Known RBP	18.33	■□□□□ 0.52
CMC2-222	ENST00000570086	CCDC84	Q86UT8	332 aa	Predicted RBP	18.33	■□□□□ 0.52
CMC2-222	ENST00000570086	ZNF784	Q8NCA9	323 aa	Predicted RBP	18.33	■□□□□ 0.52
CMC2-222	ENST00000570086	LPAR1	Q92633	364 aa		18.33	■□□□□ 0.52
CMC2-222	ENST00000570086	MAD2L2	Q9UI95	211 aa		18.33	■□□□□ 0.52
CMC2-222	ENST00000570086	AFG3L2	Q9Y4W6	797 aa		18.33	■□□□□ 0.52
CMC2-222	ENST00000570086	NDUFB10	O96000	172 aa		18.32	■□□□□ 0.52
CMC2-222	ENST00000570086	IFNAR1	P17181	557 aa		18.32	■□□□□ 0.52
CMC2-222	ENST00000570086	SMARCA1	P28370	1054 aa		18.32	■□□□□ 0.52
CMC2-222	ENST00000570086	ADD1	P35611	737 aa	Known RBP	18.32	■□□□□ 0.52
CMC2-222	ENST00000570086	SLC4A3	P48751	1232 aa		18.32	■□□□□ 0.52
CMC2-222	ENST00000570086	HMGN5	P82970	282 aa	Known RBP	18.32	■□□□□ 0.52
CMC2-222	ENST00000570086	ZNF543	Q08ER8	600 aa		18.32	■□□□□ 0.52
CMC2-222	ENST00000570086	FSTL1	Q12841	308 aa		18.32	■□□□□ 0.52
CMC2-222	ENST00000570086	NTRK3	Q16288	839 aa		18.32	■□□□□ 0.52
CMC2-222	ENST00000570086	CST9	Q5W186	159 aa		18.32	■□□□□ 0.52
CMC2-222	ENST00000570086	TMTC3	Q6ZXV5	915 aa		18.32	■□□□□ 0.52
CMC2-222	ENST00000570086	NSUN7	Q8NE18	718 aa	Known RBP	18.32	■□□□□ 0.52
CMC2-222	ENST00000570086	SMARCC2	Q8TAQ2	1214 aa		18.32	■□□□□ 0.52
CMC2-222	ENST00000570086	CLMN	Q96JQ2	1002 aa		18.32	■□□□□ 0.52
CMC2-222	ENST00000570086	ELP3	Q9H9T3	547 aa		18.32	■□□□□ 0.52
CMC2-222	ENST00000570086	LOC285556	D6RIA3	1793 aa		18.32	■□□□□ 0.52
CMC2-222	ENST00000570086	STK36	Q9NRP7	1315 aa		18.31	■□□□□ 0.52
CMC2-222	ENST00000570086	CTDNEP1	O95476	244 aa		18.31	■□□□□ 0.52

Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms