RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 EAF1Q96JC9 268 aaPredicted RBP4.22□□□□□ -1.73
VPS35-208ENST00000568612 COX4I2Q96KJ9 171 aa4.22□□□□□ -1.73
VPS35-208ENST00000568612 NT5C1AQ9BXI3 368 aa4.22□□□□□ -1.73
VPS35-208ENST00000568612 LRRC3Q9BY71 257 aa4.22□□□□□ -1.73
VPS35-208ENST00000568612 CARS2Q9HA77 564 aaKnown RBP4.22□□□□□ -1.73
VPS35-208ENST00000568612 ATP13A1Q9HD20 1204 aa4.22□□□□□ -1.73
VPS35-208ENST00000568612 KCNQ5Q9NR82 932 aa4.22□□□□□ -1.73
VPS35-208ENST00000568612 KCNH3Q9ULD8 1083 aa4.22□□□□□ -1.73
VPS35-208ENST00000568612 PITPNM2Q9BZ72 1349 aa4.21□□□□□ -1.73
VPS35-208ENST00000568612 PRR36Q9H6K5 1346 aa4.21□□□□□ -1.73
VPS35-208ENST00000568612 FAM86C2PA6NEL3 165 aa4.21□□□□□ -1.74
VPS35-208ENST00000568612 UNCXA6NJT0 531 aa4.21□□□□□ -1.74
VPS35-208ENST00000568612 LRRN2O75325 713 aa4.21□□□□□ -1.74
VPS35-208ENST00000568612 POLR2BP30876 1174 aaKnown RBP4.21□□□□□ -1.74
VPS35-208ENST00000568612 CLCQ05315 142 aa4.21□□□□□ -1.74
VPS35-208ENST00000568612 TNK2Q07912 1038 aa4.21□□□□□ -1.74
VPS35-208ENST00000568612 OVOS1Q6IE37 1185 aa4.21□□□□□ -1.74
VPS35-208ENST00000568612 C22orf34Q6ZV56 151 aa4.21□□□□□ -1.74
VPS35-208ENST00000568612 WFDC3Q8IUB2 231 aa4.21□□□□□ -1.74
VPS35-208ENST00000568612 SLFN12Q8IYM2 578 aa4.21□□□□□ -1.74
VPS35-208ENST00000568612 PPP1R13LQ8WUF5 828 aa4.21□□□□□ -1.74
VPS35-208ENST00000568612 ANP32BQ92688 251 aaKnown RBP4.21□□□□□ -1.74
VPS35-208ENST00000568612 FERD3LQ96RJ6 166 aa4.21□□□□□ -1.74
VPS35-208ENST00000568612 GMIPQ9P107 970 aa4.21□□□□□ -1.74
VPS35-208ENST00000568612 COL17A1Q9UMD9 1497 aaPredicted RBP4.2□□□□□ -1.74
VPS35-208ENST00000568612 SLC22A31A6NKX4 558 aa4.2□□□□□ -1.74
VPS35-208ENST00000568612 CLGNO14967 610 aa4.2□□□□□ -1.74
VPS35-208ENST00000568612 RNASE1P07998 156 aaKnown RBP4.2□□□□□ -1.74
VPS35-208ENST00000568612 VAMP1P23763 118 aa4.2□□□□□ -1.74
VPS35-208ENST00000568612 RGS3P49796 1198 aa4.2□□□□□ -1.74
VPS35-208ENST00000568612 MMP14P50281 582 aa4.2□□□□□ -1.74
VPS35-208ENST00000568612 FAM193AP78312 1265 aa4.2□□□□□ -1.74
VPS35-208ENST00000568612 SETQ01105 290 aaPredicted RBP4.2□□□□□ -1.74
VPS35-208ENST00000568612 CLEC16AQ2KHT3 1053 aa4.2□□□□□ -1.74
VPS35-208ENST00000568612 AXDND1Q5T1B0 1012 aaPredicted RBP4.2□□□□□ -1.74
VPS35-208ENST00000568612 CREG2Q8IUH2 290 aa4.2□□□□□ -1.74
VPS35-208ENST00000568612 ZNF654Q8IZM8 581 aa4.2□□□□□ -1.74
VPS35-208ENST00000568612 RNF141Q8WVD5 230 aa4.2□□□□□ -1.74
VPS35-208ENST00000568612 ZNF622Q969S3 477 aaKnown RBP eCLIP4.2□□□□□ -1.74
VPS35-208ENST00000568612 Q96M66 194 aa4.2□□□□□ -1.74
VPS35-208ENST00000568612 KREMEN1Q96MU8 473 aa4.2□□□□□ -1.74
VPS35-208ENST00000568612 PSMD1Q99460 953 aa4.2□□□□□ -1.74
VPS35-208ENST00000568612 TRIT1Q9H3H1 467 aaKnown RBP4.2□□□□□ -1.74
VPS35-208ENST00000568612 ANTXR1Q9H6X2 564 aa4.2□□□□□ -1.74
VPS35-208ENST00000568612 SEMA3GQ9NS98 782 aa4.2□□□□□ -1.74
VPS35-208ENST00000568612 MBNL3Q9NUK0 354 aaKnown RBP4.2□□□□□ -1.74
VPS35-208ENST00000568612 ADAMTS6Q9UKP5 1117 aa4.2□□□□□ -1.74
VPS35-208ENST00000568612 ST14Q9Y5Y6 855 aa4.2□□□□□ -1.74
VPS35-208ENST00000568612 WASH4PA8MWX3 477 aa4.19□□□□□ -1.74
VPS35-208ENST00000568612 BIN1O00499 593 aa4.19□□□□□ -1.74
VPS35-208ENST00000568612 RGS13O14921 159 aa4.19□□□□□ -1.74
VPS35-208ENST00000568612 PAX4O43316 350 aa4.19□□□□□ -1.74
VPS35-208ENST00000568612 ATE1O95260 518 aa4.19□□□□□ -1.74
VPS35-208ENST00000568612 TPP2P29144 1249 aaPredicted RBP4.19□□□□□ -1.74
VPS35-208ENST00000568612 RACK1P63244 317 aaKnown RBP4.19□□□□□ -1.74
VPS35-208ENST00000568612 IRX3P78415 501 aaPredicted RBP4.19□□□□□ -1.74
VPS35-208ENST00000568612 SLC23A3Q6PIS1 610 aa4.19□□□□□ -1.74
VPS35-208ENST00000568612 NLRC3Q7RTR2 1065 aa4.19□□□□□ -1.74
VPS35-208ENST00000568612 THAP5Q7Z6K1 395 aa4.19□□□□□ -1.74
VPS35-208ENST00000568612 NT5DC4Q86YG4 428 aa4.19□□□□□ -1.74
VPS35-208ENST00000568612 SLITRK4Q8IW52 837 aa4.19□□□□□ -1.74
VPS35-208ENST00000568612 SMAP1Q8IYB5 467 aaPredicted RBP4.19□□□□□ -1.74
VPS35-208ENST00000568612 REXO1Q8N1G1 1221 aaKnown RBP4.19□□□□□ -1.74
VPS35-208ENST00000568612 DTWD2Q8NBA8 298 aa4.19□□□□□ -1.74
VPS35-208ENST00000568612 LRRN4CLQ8ND94 238 aa4.19□□□□□ -1.74
VPS35-208ENST00000568612 PIWIL2Q8TC59 973 aaKnown RBP4.19□□□□□ -1.74
VPS35-208ENST00000568612 ATG4CQ96DT6 458 aa4.19□□□□□ -1.74
VPS35-208ENST00000568612 ZNF512BQ96KM6 892 aaPredicted RBP4.19□□□□□ -1.74
VPS35-208ENST00000568612 ZNF830Q96NB3 372 aaPredicted RBP4.19□□□□□ -1.74
VPS35-208ENST00000568612 ASCC2Q9H1I8 757 aaPredicted RBP4.19□□□□□ -1.74
VPS35-208ENST00000568612 EHMT1Q9H9B1 1298 aa4.19□□□□□ -1.74
VPS35-208ENST00000568612 GPATCH2Q9NW75 528 aa4.19□□□□□ -1.74
VPS35-208ENST00000568612 SLAMF8Q9P0V8 285 aa4.19□□□□□ -1.74
VPS35-208ENST00000568612 KIAA1522Q9P206 1035 aaPredicted RBP4.19□□□□□ -1.74
VPS35-208ENST00000568612 DDX41Q9UJV9 622 aaKnown RBP4.19□□□□□ -1.74
VPS35-208ENST00000568612 NISCHQ9Y2I1 1504 aa4.19□□□□□ -1.74
VPS35-208ENST00000568612 LTKP29376 864 aa4.18□□□□□ -1.74
VPS35-208ENST00000568612 RBM25P49756 843 aaKnown RBP4.18□□□□□ -1.74
VPS35-208ENST00000568612 RNF4P78317 190 aa4.18□□□□□ -1.74
VPS35-208ENST00000568612 HDLBPQ00341 1268 aaKnown RBP4.18□□□□□ -1.74
VPS35-208ENST00000568612 PAK2Q13177 524 aa4.18□□□□□ -1.74
VPS35-208ENST00000568612 LRRFIP1Q32MZ4 808 aaKnown RBP4.18□□□□□ -1.74
VPS35-208ENST00000568612 UTP14CQ5TAP6 766 aaKnown RBP4.18□□□□□ -1.74
VPS35-208ENST00000568612 CBLL1Q75N03 491 aa4.18□□□□□ -1.74
VPS35-208ENST00000568612 CERS3Q8IU89 383 aa4.18□□□□□ -1.74
VPS35-208ENST00000568612 TMEM40Q8WWA1 233 aa4.18□□□□□ -1.74
VPS35-208ENST00000568612 SYTL4Q96C24 671 aaPredicted RBP4.18□□□□□ -1.74
VPS35-208ENST00000568612 ASPNQ9BXN1 380 aa4.18□□□□□ -1.74
VPS35-208ENST00000568612 MKRN2Q9H000 416 aaKnown RBP4.18□□□□□ -1.74
VPS35-208ENST00000568612 PDCL3Q9H2J4 239 aa4.18□□□□□ -1.74
VPS35-208ENST00000568612 TMEM51Q9NW97 253 aa4.18□□□□□ -1.74
VPS35-208ENST00000568612 DUSP13Q9UII6 198 aa4.18□□□□□ -1.74
VPS35-208ENST00000568612 PPT2Q9UMR5 302 aa4.18□□□□□ -1.74
VPS35-208ENST00000568612 EPB41L3Q9Y2J2 1087 aaPredicted RBP4.18□□□□□ -1.74
VPS35-208ENST00000568612 RNF114Q9Y508 228 aa4.18□□□□□ -1.74
VPS35-208ENST00000568612 CLEC3AO75596 197 aa4.17□□□□□ -1.74
VPS35-208ENST00000568612 UBOX5O94941 541 aa4.17□□□□□ -1.74
VPS35-208ENST00000568612 NME1P15531 152 aaKnown RBP4.17□□□□□ -1.74
VPS35-208ENST00000568612 PTMSP20962 102 aa4.17□□□□□ -1.74
VPS35-208ENST00000568612 CDCP2Q5VXM1 449 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms