RNA–Protein interactions for RNA: ENST00000568566.5

TSC2-223, Transcript of TSC complex subunit 2, human

TSL 3

Gene TSC2, Length 542 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TSC2-223	ENST00000568566	ZNF589	Q86UQ0	364 aa	Predicted RBP	10.06	□□□□□ -0.8
TSC2-223	ENST00000568566	CCAR1	Q8IX12	1150 aa	Known RBP	10.06	□□□□□ -0.8
TSC2-223	ENST00000568566	EVI5L	Q96CN4	794 aa		10.06	□□□□□ -0.8
TSC2-223	ENST00000568566	APBA2	Q99767	749 aa		10.06	□□□□□ -0.8
TSC2-223	ENST00000568566	PORCN	Q9H237	461 aa		10.06	□□□□□ -0.8
TSC2-223	ENST00000568566	HERC5	Q9UII4	1024 aa	Known RBP	10.06	□□□□□ -0.8
TSC2-223	ENST00000568566	PALD1	Q9ULE6	856 aa		10.06	□□□□□ -0.8
TSC2-223	ENST00000568566	GTF3C3	Q9Y5Q9	886 aa		10.06	□□□□□ -0.8
TSC2-223	ENST00000568566	TACC3	Q9Y6A5	838 aa		10.06	□□□□□ -0.8
TSC2-223	ENST00000568566	HOXA7	P31268	230 aa	Predicted RBP	10.05	□□□□□ -0.8
TSC2-223	ENST00000568566	ERVK-9	P63128	1117 aa		10.05	□□□□□ -0.8
TSC2-223	ENST00000568566	ERVK-24	P63145	666 aa		10.05	□□□□□ -0.8
TSC2-223	ENST00000568566	MORN1	Q5T089	497 aa		10.05	□□□□□ -0.8
TSC2-223	ENST00000568566	ERICH6B	Q5W0A0	696 aa		10.05	□□□□□ -0.8
TSC2-223	ENST00000568566	GPR142	Q7Z601	462 aa		10.05	□□□□□ -0.8
TSC2-223	ENST00000568566	TRMT44	Q8IYL2	757 aa	Known RBP	10.05	□□□□□ -0.8
TSC2-223	ENST00000568566	USP6NL	Q92738	828 aa		10.05	□□□□□ -0.8
TSC2-223	ENST00000568566	STRBP	Q96SI9	672 aa	Known RBP	10.05	□□□□□ -0.8
TSC2-223	ENST00000568566	LBHD1	Q9BQE6	289 aa	Predicted RBP	10.05	□□□□□ -0.8
TSC2-223	ENST00000568566	WDR18	Q9BV38	432 aa		10.05	□□□□□ -0.8
TSC2-223	ENST00000568566	DNAJC18	Q9H819	358 aa		10.05	□□□□□ -0.8
TSC2-223	ENST00000568566	CWC22	Q9HCG8	908 aa	Known RBP	10.05	□□□□□ -0.8
TSC2-223	ENST00000568566	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	10.05	□□□□□ -0.8
TSC2-223	ENST00000568566	RBPJL	Q9UBG7	517 aa		10.05	□□□□□ -0.8
TSC2-223	ENST00000568566	CDK5RAP2	Q96SN8	1893 aa		10.04	□□□□□ -0.8
TSC2-223	ENST00000568566	GSG1L2	A8MUP6	293 aa		10.04	□□□□□ -0.8
TSC2-223	ENST00000568566	POTEB2	H3BUK9	544 aa		10.04	□□□□□ -0.8
TSC2-223	ENST00000568566	ASNS	P08243	561 aa		10.04	□□□□□ -0.8
TSC2-223	ENST00000568566	ATN1	P54259	1190 aa	Predicted RBP	10.04	□□□□□ -0.8
TSC2-223	ENST00000568566		Q3C1V9	767 aa		10.04	□□□□□ -0.8
TSC2-223	ENST00000568566	POTEE	Q6S8J3	1075 aa		10.04	□□□□□ -0.8
TSC2-223	ENST00000568566	PLEKHH3	Q7Z736	793 aa		10.04	□□□□□ -0.8
TSC2-223	ENST00000568566	STK11IP	Q8N1F8	1099 aa		10.04	□□□□□ -0.8
TSC2-223	ENST00000568566	APPBP2	Q92624	585 aa		10.04	□□□□□ -0.8
TSC2-223	ENST00000568566	DYNLL2	Q96FJ2	89 aa		10.04	□□□□□ -0.8
TSC2-223	ENST00000568566	TRIM34	Q9BYJ4	488 aa		10.04	□□□□□ -0.8
TSC2-223	ENST00000568566	SENP6	Q9GZR1	1112 aa	Predicted RBP	10.04	□□□□□ -0.8
TSC2-223	ENST00000568566	INCENP	Q9NQS7	918 aa		10.04	□□□□□ -0.8
TSC2-223	ENST00000568566	PI4KB	Q9UBF8	816 aa		10.04	□□□□□ -0.8
TSC2-223	ENST00000568566	LTBP2	Q14767	1821 aa		10.04	□□□□□ -0.8
TSC2-223	ENST00000568566	FLT1	P17948	1338 aa		10.04	□□□□□ -0.8
TSC2-223	ENST00000568566	FOCAD	Q5VW36	1801 aa		10.03	□□□□□ -0.8
TSC2-223	ENST00000568566	C19orf81	C9J6K1	198 aa		10.03	□□□□□ -0.8
TSC2-223	ENST00000568566	USP17L10	C9JJH3	530 aa		10.03	□□□□□ -0.8
TSC2-223	ENST00000568566	GPAA1	O43292	621 aa		10.03	□□□□□ -0.8
TSC2-223	ENST00000568566	CHML	P26374	656 aa		10.03	□□□□□ -0.8
TSC2-223	ENST00000568566	PLCD1	P51178	756 aa		10.03	□□□□□ -0.8
TSC2-223	ENST00000568566	ZYX	Q15942	572 aa	Known RBP	10.03	□□□□□ -0.8
TSC2-223	ENST00000568566	ZNF697	Q5TEC3	545 aa		10.03	□□□□□ -0.8
TSC2-223	ENST00000568566	WDR78	Q5VTH9	848 aa		10.03	□□□□□ -0.8
TSC2-223	ENST00000568566	FAM109B	Q6ICB4	259 aa	Predicted RBP	10.03	□□□□□ -0.8
TSC2-223	ENST00000568566	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	10.03	□□□□□ -0.8
TSC2-223	ENST00000568566	SLC44A5	Q8NCS7	719 aa		10.03	□□□□□ -0.8
TSC2-223	ENST00000568566	NOL10	Q9BSC4	688 aa	Known RBP	10.03	□□□□□ -0.8
TSC2-223	ENST00000568566	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	10.03	□□□□□ -0.8	2e-9	■■■■■ 29.3
TSC2-223	ENST00000568566	DHX36	Q9H2U1	1008 aa	Known RBP	10.03	□□□□□ -0.8
TSC2-223	ENST00000568566	DCP1A	Q9NPI6	582 aa	Predicted RBP	10.03	□□□□□ -0.8
TSC2-223	ENST00000568566	EMILIN3	Q9NT22	766 aa		10.03	□□□□□ -0.8
TSC2-223	ENST00000568566	FLRT1	Q9NZU1	646 aa		10.03	□□□□□ -0.8
TSC2-223	ENST00000568566	ZBTB21	Q9ULJ3	1066 aa		10.03	□□□□□ -0.8
TSC2-223	ENST00000568566	SLC4A4	Q9Y6R1	1079 aa		10.03	□□□□□ -0.8
TSC2-223	ENST00000568566	CNMD	O75829	334 aa		10.02	□□□□□ -0.81
TSC2-223	ENST00000568566	BAG3	O95817	575 aa		10.02	□□□□□ -0.81
TSC2-223	ENST00000568566	CNGA1	P29973	690 aa		10.02	□□□□□ -0.81
TSC2-223	ENST00000568566	USP5	P45974	858 aa		10.02	□□□□□ -0.81
TSC2-223	ENST00000568566	MAP2K5	Q13163	448 aa		10.02	□□□□□ -0.81
TSC2-223	ENST00000568566	MFSD14C	Q5VZR4	134 aa		10.02	□□□□□ -0.81
TSC2-223	ENST00000568566	CWC27	Q6UX04	472 aa	Known RBP	10.02	□□□□□ -0.81
TSC2-223	ENST00000568566	MAFA	Q8NHW3	353 aa	Predicted RBP	10.02	□□□□□ -0.81
TSC2-223	ENST00000568566	GTF3C2	Q8WUA4	911 aa	Predicted RBP	10.02	□□□□□ -0.81
TSC2-223	ENST00000568566	FEZ1	Q99689	392 aa		10.02	□□□□□ -0.81
TSC2-223	ENST00000568566	PRKAG2	Q9UGJ0	569 aa		10.02	□□□□□ -0.81
TSC2-223	ENST00000568566	USP17L12	C9JPN9	530 aa		10.01	□□□□□ -0.81
TSC2-223	ENST00000568566	USP17L21	D6R901	530 aa		10.01	□□□□□ -0.81
TSC2-223	ENST00000568566	GH2	P01242	217 aa		10.01	□□□□□ -0.81
TSC2-223	ENST00000568566	PLCG2	P16885	1265 aa		10.01	□□□□□ -0.81
TSC2-223	ENST00000568566	RTP1	P59025	263 aa		10.01	□□□□□ -0.81
TSC2-223	ENST00000568566	PTH1R	Q03431	593 aa		10.01	□□□□□ -0.81
TSC2-223	ENST00000568566	CTR9	Q6PD62	1173 aa		10.01	□□□□□ -0.81
TSC2-223	ENST00000568566	USP17L2	Q6R6M4	530 aa		10.01	□□□□□ -0.81
TSC2-223	ENST00000568566	CDX2	Q99626	313 aa	Predicted RBP	10.01	□□□□□ -0.81
TSC2-223	ENST00000568566	DDX20	Q9UHI6	824 aa	Known RBP	10.01	□□□□□ -0.81
TSC2-223	ENST00000568566	ATP11B	Q9Y2G3	1177 aa		10.01	□□□□□ -0.81
TSC2-223	ENST00000568566	TAF6L	Q9Y6J9	622 aa		10.01	□□□□□ -0.81
TSC2-223	ENST00000568566	SLC15A5	A6NIM6	579 aa		10	□□□□□ -0.81
TSC2-223	ENST00000568566	DNM1L	O00429	736 aa		10	□□□□□ -0.81
TSC2-223	ENST00000568566	CYP2C19	P33261	490 aa		10	□□□□□ -0.81
TSC2-223	ENST00000568566	CCNA1	P78396	465 aa		10	□□□□□ -0.81
TSC2-223	ENST00000568566	ATP2B2	Q01814	1243 aa		10	□□□□□ -0.81
TSC2-223	ENST00000568566	COL9A3	Q14050	684 aa	Predicted RBP	10	□□□□□ -0.81
TSC2-223	ENST00000568566	SHH	Q15465	462 aa		10	□□□□□ -0.81
TSC2-223	ENST00000568566	C9orf50	Q5SZB4	431 aa		10	□□□□□ -0.81
TSC2-223	ENST00000568566	ZSCAN25	Q6NSZ9	544 aa		10	□□□□□ -0.81
TSC2-223	ENST00000568566	METTL16	Q86W50	562 aa	Known RBP	10	□□□□□ -0.81
TSC2-223	ENST00000568566	TRPV1	Q8NER1	839 aa		10	□□□□□ -0.81
TSC2-223	ENST00000568566	LPAR1	Q92633	364 aa		10	□□□□□ -0.81
TSC2-223	ENST00000568566	CRNKL1	Q9BZJ0	848 aa	Known RBP	10	□□□□□ -0.81
TSC2-223	ENST00000568566	PRDM5	Q9NQX1	630 aa	Predicted RBP	10	□□□□□ -0.81
TSC2-223	ENST00000568566	MCM9	Q9NXL9	1143 aa		10	□□□□□ -0.81
TSC2-223	ENST00000568566	RABGAP1	Q9Y3P9	1069 aa		10	□□□□□ -0.81

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