RNA–Protein interactions for RNA: ENST00000568153.1

CAPN3-218, Transcript of calpain 3, humanhuman

TSL 5

Gene CAPN3, Length 598 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-218ENST00000568153 MTX1Q13505 466 aa7.55□□□□□ -1.2
CAPN3-218ENST00000568153 COL9A3Q14050 684 aaPredicted RBP7.55□□□□□ -1.2
CAPN3-218ENST00000568153 TTC39BQ5VTQ0 682 aaPredicted RBP7.55□□□□□ -1.2
CAPN3-218ENST00000568153 C20orf204Q6ZNR8 217 aa7.55□□□□□ -1.2
CAPN3-218ENST00000568153 TMC7Q7Z402 723 aa7.55□□□□□ -1.2
CAPN3-218ENST00000568153 C16orf71Q8IYS4 520 aaPredicted RBP7.55□□□□□ -1.2
CAPN3-218ENST00000568153 C1orf127Q8N9H9 656 aa7.55□□□□□ -1.2
CAPN3-218ENST00000568153 CCDC191Q8NCU4 936 aa7.55□□□□□ -1.2
CAPN3-218ENST00000568153 TRPM4Q8TD43 1214 aa7.55□□□□□ -1.2
CAPN3-218ENST00000568153 TRIM11Q96F44 468 aa7.55□□□□□ -1.2
CAPN3-218ENST00000568153 LRRCC1Q9C099 1032 aa7.55□□□□□ -1.2
CAPN3-218ENST00000568153 CHRDQ9H2X0 955 aa7.55□□□□□ -1.2
CAPN3-218ENST00000568153 PRDM6Q9NQX0 595 aa7.55□□□□□ -1.2
CAPN3-218ENST00000568153 CWC25Q9NXE8 425 aaPredicted RBP7.55□□□□□ -1.2
CAPN3-218ENST00000568153 NAGPAQ9UK23 515 aa7.55□□□□□ -1.2
CAPN3-218ENST00000568153 SLC6A14Q9UN76 642 aa7.55□□□□□ -1.2
CAPN3-218ENST00000568153 IBTKQ9P2D0 1353 aaPredicted RBP7.55□□□□□ -1.2
CAPN3-218ENST00000568153 ABCA3Q99758 1704 aa7.55□□□□□ -1.2
CAPN3-218ENST00000568153 PXDNLA1KZ92 1463 aa7.55□□□□□ -1.2
CAPN3-218ENST00000568153 TNS2Q63HR2 1409 aa7.54□□□□□ -1.2
CAPN3-218ENST00000568153 LOC102724428A0A0B4J2F2 783 aa7.54□□□□□ -1.2
CAPN3-218ENST00000568153 ERVV-1B6SEH8 477 aa7.54□□□□□ -1.2
CAPN3-218ENST00000568153 SMARCA5O60264 1052 aaPredicted RBP7.54□□□□□ -1.2
CAPN3-218ENST00000568153 HOXD8P13378 290 aaPredicted RBP7.54□□□□□ -1.2
CAPN3-218ENST00000568153 IL6STP40189 918 aaPredicted RBP7.54□□□□□ -1.2
CAPN3-218ENST00000568153 NRLP54845 237 aa7.54□□□□□ -1.2
CAPN3-218ENST00000568153 SIK1P57059 783 aa7.54□□□□□ -1.2
CAPN3-218ENST00000568153 GPLD1P80108 840 aa7.54□□□□□ -1.2
CAPN3-218ENST00000568153 PLAURQ03405 335 aa7.54□□□□□ -1.2
CAPN3-218ENST00000568153 COL13A1Q5TAT6 717 aaPredicted RBP7.54□□□□□ -1.2
CAPN3-218ENST00000568153 HFE2Q6ZVN8 426 aa7.54□□□□□ -1.2
CAPN3-218ENST00000568153 SUCLG2Q96I99 432 aa7.54□□□□□ -1.2
CAPN3-218ENST00000568153 NSUN5Q96P11 429 aaKnown RBP7.54□□□□□ -1.2
CAPN3-218ENST00000568153 BCL11AQ9H165 835 aa7.54□□□□□ -1.2
CAPN3-218ENST00000568153 EXOC6BQ9Y2D4 811 aa7.54□□□□□ -1.2
CAPN3-218ENST00000568153 NOP58Q9Y2X3 529 aaKnown RBP7.54□□□□□ -1.2
CAPN3-218ENST00000568153 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.54□□□□□ -1.2
CAPN3-218ENST00000568153 PKD1L3Q7Z443 1732 aa7.54□□□□□ -1.2
CAPN3-218ENST00000568153 PARP4Q9UKK3 1724 aaKnown RBP7.54□□□□□ -1.2
CAPN3-218ENST00000568153 KDM3BQ7LBC6 1761 aa7.54□□□□□ -1.2
CAPN3-218ENST00000568153 M0R082 166 aa7.53□□□□□ -1.2
CAPN3-218ENST00000568153 PIK3R2O00459 728 aa7.53□□□□□ -1.2
CAPN3-218ENST00000568153 EIF5BO60841 1220 aaKnown RBP7.53□□□□□ -1.2
CAPN3-218ENST00000568153 G3BP1Q13283 466 aaKnown RBP eCLIP7.53□□□□□ -1.2
CAPN3-218ENST00000568153 PLA2G4EQ3MJ16 856 aa7.53□□□□□ -1.2
CAPN3-218ENST00000568153 HSP90AB3PQ58FF7 597 aa7.53□□□□□ -1.2
CAPN3-218ENST00000568153 BMP2KLQ5H9B9 411 aa7.53□□□□□ -1.2
CAPN3-218ENST00000568153 INTS5Q6P9B9 1019 aaKnown RBP7.53□□□□□ -1.2
CAPN3-218ENST00000568153 ALYREFQ86V81 257 aaKnown RBP7.53□□□□□ -1.2
CAPN3-218ENST00000568153 MICALL1Q8N3F8 863 aa7.53□□□□□ -1.2
CAPN3-218ENST00000568153 ZNF417Q8TAU3 575 aa7.53□□□□□ -1.2
CAPN3-218ENST00000568153 SNX29Q8TEQ0 813 aa7.53□□□□□ -1.2
CAPN3-218ENST00000568153 KIF1BPQ96EK5 621 aa7.53□□□□□ -1.2
CAPN3-218ENST00000568153 ZNF587Q96SQ5 575 aaPredicted RBP7.53□□□□□ -1.2
CAPN3-218ENST00000568153 ISCA1Q9BUE6 129 aa7.53□□□□□ -1.2
CAPN3-218ENST00000568153 BICC1Q9H694 974 aaKnown RBP7.53□□□□□ -1.2
CAPN3-218ENST00000568153 KANSL3Q9P2N6 904 aa7.53□□□□□ -1.2
CAPN3-218ENST00000568153 SCN11AQ9UI33 1791 aa7.53□□□□□ -1.2
CAPN3-218ENST00000568153 KRBA1A5PL33 1030 aa7.52□□□□□ -1.21
CAPN3-218ENST00000568153 J3QW42 95 aa7.52□□□□□ -1.21
CAPN3-218ENST00000568153 CPB1P15086 417 aa7.52□□□□□ -1.21
CAPN3-218ENST00000568153 ANP32AP39687 249 aaKnown RBP7.52□□□□□ -1.21
CAPN3-218ENST00000568153 CRKLP46109 303 aaKnown RBP7.52□□□□□ -1.21
CAPN3-218ENST00000568153 EIF5P55010 431 aaKnown RBP7.52□□□□□ -1.21
CAPN3-218ENST00000568153 ORC1Q13415 861 aa7.52□□□□□ -1.21
CAPN3-218ENST00000568153 OS9Q13438 667 aaPredicted RBP7.52□□□□□ -1.21
CAPN3-218ENST00000568153 C8orf86Q6ZUL3 223 aa7.52□□□□□ -1.21
CAPN3-218ENST00000568153 UBE3BQ7Z3V4 1068 aa7.52□□□□□ -1.21
CAPN3-218ENST00000568153 FAM35AQ86V20 835 aa7.52□□□□□ -1.21
CAPN3-218ENST00000568153 ERC1Q8IUD2 1116 aa7.52□□□□□ -1.21
CAPN3-218ENST00000568153 JARID2Q92833 1246 aaPredicted RBP7.52□□□□□ -1.21
CAPN3-218ENST00000568153 KAZALD1Q96I82 304 aa7.52□□□□□ -1.21
CAPN3-218ENST00000568153 DMRTB1Q96MA1 342 aa7.52□□□□□ -1.21
CAPN3-218ENST00000568153 ASB16Q96NS5 453 aa7.52□□□□□ -1.21
CAPN3-218ENST00000568153 NIF3L1Q9GZT8 377 aa7.52□□□□□ -1.21
CAPN3-218ENST00000568153 UPF2Q9HAU5 1272 aaKnown RBP7.52□□□□□ -1.21
CAPN3-218ENST00000568153 MAP3K15Q6ZN16 1313 aa7.52□□□□□ -1.21
CAPN3-218ENST00000568153 EREGO14944 169 aa7.51□□□□□ -1.21
CAPN3-218ENST00000568153 PHACTR2O75167 634 aa7.51□□□□□ -1.21
CAPN3-218ENST00000568153 NID1P14543 1247 aa7.51□□□□□ -1.21
CAPN3-218ENST00000568153 CES1P23141 567 aa7.51□□□□□ -1.21
CAPN3-218ENST00000568153 PDE1AP54750 535 aa7.51□□□□□ -1.21
CAPN3-218ENST00000568153 CASP7P55210 303 aa7.51□□□□□ -1.21
CAPN3-218ENST00000568153 ITPK1Q13572 414 aa7.51□□□□□ -1.21
CAPN3-218ENST00000568153 HLFQ16534 295 aa7.51□□□□□ -1.21
CAPN3-218ENST00000568153 PCSK7Q16549 785 aa7.51□□□□□ -1.21
CAPN3-218ENST00000568153 ZNF772Q68DY9 489 aaPredicted RBP7.51□□□□□ -1.21
CAPN3-218ENST00000568153 ALKBH8Q96BT7 664 aaKnown RBP7.51□□□□□ -1.21
CAPN3-218ENST00000568153 NOP53Q9NZM5 478 aaKnown RBP7.51□□□□□ -1.21
CAPN3-218ENST00000568153 STAP2Q9UGK3 403 aa7.51□□□□□ -1.21
CAPN3-218ENST00000568153 ZBTB1Q9Y2K1 713 aa7.51□□□□□ -1.21
CAPN3-218ENST00000568153 KCPQ6ZWJ8 1503 aa7.51□□□□□ -1.21
CAPN3-218ENST00000568153 SIPA1L3O60292 1781 aaPredicted RBP7.51□□□□□ -1.21
CAPN3-218ENST00000568153 PALLDQ8WX93 1383 aa7.5□□□□□ -1.21
CAPN3-218ENST00000568153 LRP6O75581 1613 aa7.5□□□□□ -1.21
CAPN3-218ENST00000568153 TREHO43280 583 aa7.5□□□□□ -1.21
CAPN3-218ENST00000568153 KIF4AO95239 1232 aa7.5□□□□□ -1.21
CAPN3-218ENST00000568153 PCCAP05165 728 aaPredicted RBP7.5□□□□□ -1.21
CAPN3-218ENST00000568153 HMGB2P26583 209 aaKnown RBP7.5□□□□□ -1.21
CAPN3-218ENST00000568153 FOXO4P98177 505 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms