RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 TMX2Q9Y320 296 aa26.94■■□□□ 1.9
CLN3-215ENST00000565236 SPDYE16A6NNV3 312 aaPredicted RBP26.93■■□□□ 1.9
CLN3-215ENST00000565236 GSG1L2A8MUP6 293 aa26.93■■□□□ 1.9
CLN3-215ENST00000565236 RGS2P41220 211 aa26.93■■□□□ 1.9
CLN3-215ENST00000565236 TRIM32Q13049 653 aa26.93■■□□□ 1.9
CLN3-215ENST00000565236 SBK1Q52WX2 424 aa26.93■■□□□ 1.9
CLN3-215ENST00000565236 MORN1Q5T089 497 aa26.93■■□□□ 1.9
CLN3-215ENST00000565236 WDR78Q5VTH9 848 aa26.93■■□□□ 1.9
CLN3-215ENST00000565236 CLEC10AQ8IUN9 316 aa26.93■■□□□ 1.9
CLN3-215ENST00000565236 OTUD7AQ8TE49 926 aaPredicted RBP26.93■■□□□ 1.9
CLN3-215ENST00000565236 TRIB2Q92519 343 aa26.93■■□□□ 1.9
CLN3-215ENST00000565236 LPAR1Q92633 364 aa26.93■■□□□ 1.9
CLN3-215ENST00000565236 USP6NLQ92738 828 aa26.93■■□□□ 1.9
CLN3-215ENST00000565236 BTBD7Q9P203 1132 aa26.93■■□□□ 1.9
CLN3-215ENST00000565236 GPAA1O43292 621 aa26.92■■□□□ 1.9
CLN3-215ENST00000565236 ATP2B2Q01814 1243 aa26.92■■□□□ 1.9
CLN3-215ENST00000565236 PI4K2BQ8TCG2 481 aa26.92■■□□□ 1.9
CLN3-215ENST00000565236 KANSL2Q9H9L4 492 aa26.92■■□□□ 1.9
CLN3-215ENST00000565236 MINDY4BA8MYZ0 360 aa26.91■■□□□ 1.9
CLN3-215ENST00000565236 APPP05067 770 aa26.91■■□□□ 1.9
CLN3-215ENST00000565236 GNAT2P19087 354 aa26.91■■□□□ 1.9
CLN3-215ENST00000565236 MX1P20591 662 aa26.91■■□□□ 1.9
CLN3-215ENST00000565236 KIAA1755Q5JYT7 1200 aa26.91■■□□□ 1.9
CLN3-215ENST00000565236 ANKRD45Q5TZF3 282 aa26.91■■□□□ 1.9
CLN3-215ENST00000565236 CRISPLD2Q9H0B8 497 aa26.91■■□□□ 1.9
CLN3-215ENST00000565236 CEP290O15078 2479 aa26.91■■□□□ 1.9
CLN3-215ENST00000565236 ZKSCAN1P17029 563 aaPredicted RBP26.9■■□□□ 1.9
CLN3-215ENST00000565236 SPICE1Q8N0Z3 855 aa26.9■■□□□ 1.9
CLN3-215ENST00000565236 FSD1Q9BTV5 496 aa26.9■■□□□ 1.9
CLN3-215ENST00000565236 VCPKMTQ9H867 229 aa26.9■■□□□ 1.9
CLN3-215ENST00000565236 MKNK2Q9HBH9 465 aa26.9■■□□□ 1.9
CLN3-215ENST00000565236 IVNS1ABPQ9Y6Y0 642 aa26.9■■□□□ 1.9
CLN3-215ENST00000565236 H0YGN5 161 aa26.89■■□□□ 1.9
CLN3-215ENST00000565236 M0R2C6 588 aa26.89■■□□□ 1.9
CLN3-215ENST00000565236 EEF2P13639 858 aaKnown RBP26.89■■□□□ 1.9
CLN3-215ENST00000565236 TDO2P48775 406 aa26.89■■□□□ 1.9
CLN3-215ENST00000565236 MAP2K5Q13163 448 aa26.89■■□□□ 1.9
CLN3-215ENST00000565236 STK11IPQ8N1F8 1099 aa26.89■■□□□ 1.9
CLN3-215ENST00000565236 APBA2Q99767 749 aa26.89■■□□□ 1.9
CLN3-215ENST00000565236 SLC15A5A6NIM6 579 aa26.88■■□□□ 1.89
CLN3-215ENST00000565236 FLOT1O75955 427 aa26.88■■□□□ 1.89
CLN3-215ENST00000565236 PRKAR2AP13861 404 aaKnown RBP26.88■■□□□ 1.89
CLN3-215ENST00000565236 PTPREP23469 700 aa26.88■■□□□ 1.89
CLN3-215ENST00000565236 PATL2C9JE40 543 aaKnown RBP26.87■■□□□ 1.89
CLN3-215ENST00000565236 DSG3P32926 999 aa26.87■■□□□ 1.89
CLN3-215ENST00000565236 HDAC1Q13547 482 aaPredicted RBP26.87■■□□□ 1.89
CLN3-215ENST00000565236 CCL14Q16627 93 aa26.87■■□□□ 1.89
CLN3-215ENST00000565236 MAP3K21Q5TCX8 1036 aa26.87■■□□□ 1.89
CLN3-215ENST00000565236 MB21D1Q8N884 522 aa26.87■■□□□ 1.89
CLN3-215ENST00000565236 WDR46O15213 610 aaKnown RBP26.86■■□□□ 1.89
CLN3-215ENST00000565236 CACNB2Q08289 660 aaPredicted RBP26.86■■□□□ 1.89
CLN3-215ENST00000565236 PAWRQ96IZ0 340 aaKnown RBP26.86■■□□□ 1.89
CLN3-215ENST00000565236 SEC62Q99442 399 aaKnown RBP26.86■■□□□ 1.89
CLN3-215ENST00000565236 MOV10L1Q9BXT6 1211 aaKnown RBP26.86■■□□□ 1.89
CLN3-215ENST00000565236 NACAP1Q9BZK3 213 aa26.86■■□□□ 1.89
CLN3-215ENST00000565236 GOPCQ9HD26 462 aa26.86■■□□□ 1.89
CLN3-215ENST00000565236 RASA1P20936 1047 aa26.85■■□□□ 1.89
CLN3-215ENST00000565236 HABP4Q5JVS0 413 aaKnown RBP26.85■■□□□ 1.89
CLN3-215ENST00000565236 SAMD1Q6SPF0 538 aaPredicted RBP26.85■■□□□ 1.89
CLN3-215ENST00000565236 IFNL3Q8IZI9 196 aa26.85■■□□□ 1.89
CLN3-215ENST00000565236 ANKLE1Q8NAG6 615 aa26.85■■□□□ 1.89
CLN3-215ENST00000565236 SPATC1LQ9H0A9 340 aa26.85■■□□□ 1.89
CLN3-215ENST00000565236 ZNF287Q9HBT7 754 aa26.85■■□□□ 1.89
CLN3-215ENST00000565236 EPB41L4AQ9HCS5 686 aaPredicted RBP26.85■■□□□ 1.89
CLN3-215ENST00000565236 NR2E3Q9Y5X4 410 aa26.85■■□□□ 1.89
CLN3-215ENST00000565236 RAD21O60216 631 aa26.84■■□□□ 1.89
CLN3-215ENST00000565236 AAMPQ13685 434 aa26.84■■□□□ 1.89
CLN3-215ENST00000565236 PLS1Q14651 629 aa26.84■■□□□ 1.89
CLN3-215ENST00000565236 ZMYM1Q5SVZ6 1142 aa26.84■■□□□ 1.89
CLN3-215ENST00000565236 NECAB2Q7Z6G3 386 aa26.84■■□□□ 1.89
CLN3-215ENST00000565236 GNL3Q9BVP2 549 aaKnown RBP eCLIP26.84■■□□□ 1.89
CLN3-215ENST00000565236 GRB14Q14449 540 aa26.83■■□□□ 1.89
CLN3-215ENST00000565236 MFSD14CQ5VZR4 134 aa26.83■■□□□ 1.89
CLN3-215ENST00000565236 ZNF444Q8N0Y2 327 aaPredicted RBP26.83■■□□□ 1.89
CLN3-215ENST00000565236 ATG4CQ96DT6 458 aa26.83■■□□□ 1.89
CLN3-215ENST00000565236 SALL3Q9BXA9 1300 aa26.83■■□□□ 1.89
CLN3-215ENST00000565236 ROBO3Q96MS0 1386 aa26.83■■□□□ 1.88
CLN3-215ENST00000565236 RLFQ13129 1914 aa26.82■■□□□ 1.88
CLN3-215ENST00000565236 STRNO43815 780 aa26.82■■□□□ 1.88
CLN3-215ENST00000565236 SHCBP1Q8NEM2 672 aa26.82■■□□□ 1.88
CLN3-215ENST00000565236 STAP2Q9UGK3 403 aa26.82■■□□□ 1.88
CLN3-215ENST00000565236 HOXC6P09630 235 aa26.81■■□□□ 1.88
CLN3-215ENST00000565236 ERCC3P19447 782 aa26.81■■□□□ 1.88
CLN3-215ENST00000565236 DPP9Q86TI2 863 aa26.81■■□□□ 1.88
CLN3-215ENST00000565236 DIS3LQ8TF46 1054 aaKnown RBP26.81■■□□□ 1.88
CLN3-215ENST00000565236 NYAP2Q9P242 653 aa26.81■■□□□ 1.88
CLN3-215ENST00000565236 OGDHLQ9ULD0 1010 aa26.81■■□□□ 1.88
CLN3-215ENST00000565236 COLQQ9Y215 455 aaPredicted RBP26.81■■□□□ 1.88
CLN3-215ENST00000565236 EVI5O60447 810 aa26.8■■□□□ 1.88
CLN3-215ENST00000565236 CCND3P30281 292 aaPredicted RBP26.8■■□□□ 1.88
CLN3-215ENST00000565236 PDE1AP54750 535 aa26.8■■□□□ 1.88
CLN3-215ENST00000565236 NCAPG2Q86XI2 1143 aa26.8■■□□□ 1.88
CLN3-215ENST00000565236 NBPF3Q9H094 633 aa26.8■■□□□ 1.88
CLN3-215ENST00000565236 NAPBQ9H115 298 aa26.8■■□□□ 1.88
CLN3-215ENST00000565236 MROH8Q9H579 483 aa26.8■■□□□ 1.88
CLN3-215ENST00000565236 PRDM1O75626 825 aa26.79■■□□□ 1.88
CLN3-215ENST00000565236 SLC3A2P08195 630 aaKnown RBP26.79■■□□□ 1.88
CLN3-215ENST00000565236 FAM83BQ5T0W9 1011 aa26.79■■□□□ 1.88
CLN3-215ENST00000565236 NPLOC4Q8TAT6 608 aa26.79■■□□□ 1.88
CLN3-215ENST00000565236 EVI5LQ96CN4 794 aa26.79■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms