RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 ACER1Q8TDN7 264 aa24.16■■□□□ 1.46
CLN3-212ENST00000564574 OTUD5Q96G74 571 aa24.16■■□□□ 1.46
CLN3-212ENST00000564574 WNK4Q96J92 1243 aa24.16■■□□□ 1.46
CLN3-212ENST00000564574 FEZ1Q99689 392 aa24.16■■□□□ 1.46
CLN3-212ENST00000564574 GOPCQ9HD26 462 aa24.16■■□□□ 1.46
CLN3-212ENST00000564574 KCNH4Q9UQ05 1017 aa24.16■■□□□ 1.46
CLN3-212ENST00000564574 ZBTB48P10074 688 aaPredicted RBP24.15■■□□□ 1.46
CLN3-212ENST00000564574 ECE1P42892 770 aa24.15■■□□□ 1.46
CLN3-212ENST00000564574 MCM2P49736 904 aa24.15■■□□□ 1.46
CLN3-212ENST00000564574 BACE1P56817 501 aa24.15■■□□□ 1.46
CLN3-212ENST00000564574 SPP2Q13103 211 aa24.15■■□□□ 1.46
CLN3-212ENST00000564574 SYNE3Q6ZMZ3 975 aa24.15■■□□□ 1.46
CLN3-212ENST00000564574 CATIPQ7Z7H3 387 aa24.15■■□□□ 1.46
CLN3-212ENST00000564574 GMCL1P1Q8NEA9 526 aa24.15■■□□□ 1.46
CLN3-212ENST00000564574 SENP2Q9HC62 589 aa24.15■■□□□ 1.46
CLN3-212ENST00000564574 ZBTB4Q9P1Z0 1013 aaPredicted RBP24.15■■□□□ 1.46
CLN3-212ENST00000564574 SLC12A7Q9Y666 1083 aa24.15■■□□□ 1.46
CLN3-212ENST00000564574 LOC285556D6RIA3 1793 aa24.14■■□□□ 1.46
CLN3-212ENST00000564574 DDAH1O94760 285 aa24.14■■□□□ 1.45
CLN3-212ENST00000564574 CALM1P0DP23 149 aa24.14■■□□□ 1.45
CLN3-212ENST00000564574 CALM2P0DP24 149 aa24.14■■□□□ 1.45
CLN3-212ENST00000564574 CALM3P0DP25 149 aa24.14■■□□□ 1.45
CLN3-212ENST00000564574 ZNF157P51786 506 aaPredicted RBP24.14■■□□□ 1.45
CLN3-212ENST00000564574 RCAN1P53805 252 aa24.14■■□□□ 1.45
CLN3-212ENST00000564574 LRRC47Q8N1G4 583 aaKnown RBP24.14■■□□□ 1.45
CLN3-212ENST00000564574 CNKSR2Q8WXI2 1034 aa24.14■■□□□ 1.45
CLN3-212ENST00000564574 VCPKMTQ9H867 229 aa24.14■■□□□ 1.45
CLN3-212ENST00000564574 KLF18A0A0U1RQI7 1052 aa24.13■■□□□ 1.45
CLN3-212ENST00000564574 TRIM75PA6NK02 468 aa24.13■■□□□ 1.45
CLN3-212ENST00000564574 IRF6O14896 467 aa24.13■■□□□ 1.45
CLN3-212ENST00000564574 APOBRQ0VD83 1088 aa24.13■■□□□ 1.45
CLN3-212ENST00000564574 MTMR2Q13614 643 aa24.13■■□□□ 1.45
CLN3-212ENST00000564574 SH3D19Q5HYK7 790 aa24.13■■□□□ 1.45
CLN3-212ENST00000564574 SPRYD7Q5W111 196 aa24.13■■□□□ 1.45
CLN3-212ENST00000564574 USP17L2Q6R6M4 530 aa24.13■■□□□ 1.45
CLN3-212ENST00000564574 RASAL3Q86YV0 1011 aa24.13■■□□□ 1.45
CLN3-212ENST00000564574 ZNF654Q8IZM8 581 aa24.13■■□□□ 1.45
CLN3-212ENST00000564574 ZNF274Q96GC6 653 aaPredicted RBP24.13■■□□□ 1.45
CLN3-212ENST00000564574 C12orf42Q96LP6 360 aa24.13■■□□□ 1.45
CLN3-212ENST00000564574 MAP3K14Q99558 947 aa24.13■■□□□ 1.45
CLN3-212ENST00000564574 APOA5Q6Q788 366 aa24.12■■□□□ 1.45
CLN3-212ENST00000564574 LPAR1Q92633 364 aa24.12■■□□□ 1.45
CLN3-212ENST00000564574 CCDC102AQ96A19 550 aa24.12■■□□□ 1.45
CLN3-212ENST00000564574 BRPF3Q9ULD4 1205 aa24.12■■□□□ 1.45
CLN3-212ENST00000564574 F5H6K3 240 aa24.11■■□□□ 1.45
CLN3-212ENST00000564574 ZBTB43O43298 467 aa24.11■■□□□ 1.45
CLN3-212ENST00000564574 SLC10A3P09131 477 aa24.11■■□□□ 1.45
CLN3-212ENST00000564574 GJA5P36382 358 aa24.11■■□□□ 1.45
CLN3-212ENST00000564574 KLRC3Q07444 240 aa24.11■■□□□ 1.45
CLN3-212ENST00000564574 TROAPQ12815 778 aa24.11■■□□□ 1.45
CLN3-212ENST00000564574 SNAPC2Q13487 334 aa24.11■■□□□ 1.45
CLN3-212ENST00000564574 SLFN13Q68D06 897 aa24.11■■□□□ 1.45
CLN3-212ENST00000564574 DCAF4Q8WV16 495 aa24.11■■□□□ 1.45
CLN3-212ENST00000564574 ZSCAN31Q96LW9 406 aaPredicted RBP24.11■■□□□ 1.45
CLN3-212ENST00000564574 TMOD4Q9NZQ9 345 aa24.11■■□□□ 1.45
CLN3-212ENST00000564574 LIMCH1Q9UPQ0 1083 aa24.11■■□□□ 1.45
CLN3-212ENST00000564574 A0A0G2JLL6 359 aaPredicted RBP24.1■■□□□ 1.45
CLN3-212ENST00000564574 RASSF10A6NK89 507 aa24.1■■□□□ 1.45
CLN3-212ENST00000564574 SNHG28P0DPA3 235 aa24.1■■□□□ 1.45
CLN3-212ENST00000564574 PRRT2Q7Z6L0 340 aaPredicted RBP24.1■■□□□ 1.45
CLN3-212ENST00000564574 SNX21Q969T3 373 aa24.1■■□□□ 1.45
CLN3-212ENST00000564574 GMCL1Q96IK5 515 aa24.1■■□□□ 1.45
CLN3-212ENST00000564574 NID2Q14112 1375 aa24.1■■□□□ 1.45
CLN3-212ENST00000564574 NDUFB10O96000 172 aa24.09■■□□□ 1.45
CLN3-212ENST00000564574 GTF2A2P52657 109 aa24.09■■□□□ 1.45
CLN3-212ENST00000564574 HMGCS2P54868 508 aa24.09■■□□□ 1.45
CLN3-212ENST00000564574 PPP2R5BQ15173 497 aa24.09■■□□□ 1.45
CLN3-212ENST00000564574 ZYXQ15942 572 aaKnown RBP24.09■■□□□ 1.45
CLN3-212ENST00000564574 PROCA1Q8NCQ7 364 aaPredicted RBP24.09■■□□□ 1.45
CLN3-212ENST00000564574 EMILIN3Q9NT22 766 aa24.09■■□□□ 1.45
CLN3-212ENST00000564574 GOLGA8BA8MQT2 603 aa24.08■■□□□ 1.45
CLN3-212ENST00000564574 WDR46O15213 610 aaKnown RBP24.08■■□□□ 1.45
CLN3-212ENST00000564574 PDHBP11177 359 aa24.08■■□□□ 1.45
CLN3-212ENST00000564574 PDIA3P30101 505 aaKnown RBP24.08■■□□□ 1.45
CLN3-212ENST00000564574 GRM4Q14833 912 aa24.08■■□□□ 1.45
CLN3-212ENST00000564574 DEFB115Q30KQ5 88 aa24.08■■□□□ 1.45
CLN3-212ENST00000564574 IFFO2Q5TF58 517 aa24.08■■□□□ 1.45
CLN3-212ENST00000564574 FASTKD5Q7L8L6 764 aaKnown RBP24.08■■□□□ 1.45
CLN3-212ENST00000564574 CTCFLQ8NI51 663 aaPredicted RBP24.08■■□□□ 1.45
CLN3-212ENST00000564574 NUP133Q8WUM0 1156 aa24.08■■□□□ 1.45
CLN3-212ENST00000564574 SH2B1Q9NRF2 756 aaPredicted RBP24.08■■□□□ 1.45
CLN3-212ENST00000564574 TPCN1Q9ULQ1 816 aa24.08■■□□□ 1.45
CLN3-212ENST00000564574 NAP1L2Q9ULW6 460 aaPredicted RBP24.08■■□□□ 1.45
CLN3-212ENST00000564574 RAD21O60216 631 aa24.07■■□□□ 1.44
CLN3-212ENST00000564574 CETPP11597 493 aa24.07■■□□□ 1.44
CLN3-212ENST00000564574 KIF5BP33176 963 aa24.07■■□□□ 1.44
CLN3-212ENST00000564574 SLC1A4P43007 532 aa24.07■■□□□ 1.44
CLN3-212ENST00000564574 METAP2P50579 478 aaKnown RBP eCLIP24.07■■□□□ 1.44
CLN3-212ENST00000564574 ASPRV1Q53RT3 343 aa24.07■■□□□ 1.44
CLN3-212ENST00000564574 GPATCH4Q5T3I0 446 aaKnown RBP24.07■■□□□ 1.44
CLN3-212ENST00000564574 NOL8Q76FK4 1167 aaKnown RBP24.07■■□□□ 1.44
CLN3-212ENST00000564574 MICU3Q86XE3 530 aa24.07■■□□□ 1.44
CLN3-212ENST00000564574 JMYQ8N9B5 988 aa24.07■■□□□ 1.44
CLN3-212ENST00000564574 CHMP4CQ96CF2 233 aa24.07■■□□□ 1.44
CLN3-212ENST00000564574 RBM28Q9NW13 759 aaKnown RBP24.07■■□□□ 1.44
CLN3-212ENST00000564574 GOLGA8AA7E2F4 631 aa24.06■■□□□ 1.44
CLN3-212ENST00000564574 CD2BP2O95400 341 aaKnown RBP24.06■■□□□ 1.44
CLN3-212ENST00000564574 PARP1P09874 1014 aaKnown RBP24.06■■□□□ 1.44
CLN3-212ENST00000564574 BMP3P12645 472 aa24.06■■□□□ 1.44
CLN3-212ENST00000564574 FANCBQ8NB91 859 aa24.06■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms