RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 TROAPQ12815 778 aa14.93□□□□□ -0.02
CLK3-214ENST00000564096 GRM4Q14833 912 aa14.93□□□□□ -0.02
CLK3-214ENST00000564096 ASPRV1Q53RT3 343 aa14.93□□□□□ -0.02
CLK3-214ENST00000564096 ARMC9Q7Z3E5 817 aa14.93□□□□□ -0.02
CLK3-214ENST00000564096 RAB11FIP4Q86YS3 637 aa14.93□□□□□ -0.02
CLK3-214ENST00000564096 CLEC10AQ8IUN9 316 aa14.93□□□□□ -0.02
CLK3-214ENST00000564096 CCDC144CPQ8IYA2 1237 aa14.93□□□□□ -0.02
CLK3-214ENST00000564096 TRIM22Q8IYM9 498 aa14.93□□□□□ -0.02
CLK3-214ENST00000564096 FANCBQ8NB91 859 aa14.93□□□□□ -0.02
CLK3-214ENST00000564096 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.93□□□□□ -0.02
CLK3-214ENST00000564096 KLRG1Q96E93 195 aa14.93□□□□□ -0.02
CLK3-214ENST00000564096 LZTS2Q9BRK4 669 aa14.93□□□□□ -0.02
CLK3-214ENST00000564096 FOXD4L1Q9NU39 408 aa14.93□□□□□ -0.02
CLK3-214ENST00000564096 PTPDC1A2A3K4 754 aa14.92□□□□□ -0.02
CLK3-214ENST00000564096 USP17L5A8MUK1 530 aa14.92□□□□□ -0.02
CLK3-214ENST00000564096 PARP1P09874 1014 aaKnown RBP14.92□□□□□ -0.02
CLK3-214ENST00000564096 POTEIP0CG38 1075 aa14.92□□□□□ -0.02
CLK3-214ENST00000564096 POTEJP0CG39 1038 aa14.92□□□□□ -0.02
CLK3-214ENST00000564096 GUCY1A2P33402 732 aa14.92□□□□□ -0.02
CLK3-214ENST00000564096 FKBP1BP68106 108 aa14.92□□□□□ -0.02
CLK3-214ENST00000564096 ST3GAL1Q11201 340 aa14.92□□□□□ -0.02
CLK3-214ENST00000564096 RRP1BQ14684 758 aaKnown RBP14.92□□□□□ -0.02
CLK3-214ENST00000564096 CHADLQ6NUI6 762 aa14.92□□□□□ -0.02
CLK3-214ENST00000564096 FAM184AQ8NB25 1140 aa14.92□□□□□ -0.02
CLK3-214ENST00000564096 SPRYD3Q8NCJ5 442 aa14.92□□□□□ -0.02
CLK3-214ENST00000564096 GMCL1P1Q8NEA9 526 aa14.92□□□□□ -0.02
CLK3-214ENST00000564096 DCAF4Q8WV16 495 aa14.92□□□□□ -0.02
CLK3-214ENST00000564096 MKL1Q969V6 931 aa14.92□□□□□ -0.02
CLK3-214ENST00000564096 NCOA5Q9HCD5 579 aaKnown RBP14.92□□□□□ -0.02
CLK3-214ENST00000564096 RBM27Q9P2N5 1060 aaKnown RBP14.92□□□□□ -0.02
CLK3-214ENST00000564096 PAPPA2Q9BXP8 1791 aa14.92□□□□□ -0.02
CLK3-214ENST00000564096 STK36Q9NRP7 1315 aa14.92□□□□□ -0.02
CLK3-214ENST00000564096 RAD21O60216 631 aa14.91□□□□□ -0.02
CLK3-214ENST00000564096 PDIA4P13667 645 aaKnown RBP14.91□□□□□ -0.02
CLK3-214ENST00000564096 PDCP20941 246 aa14.91□□□□□ -0.02
CLK3-214ENST00000564096 INPP5BP32019 993 aa14.91□□□□□ -0.02
CLK3-214ENST00000564096 MAP3K9P80192 1104 aa14.91□□□□□ -0.02
CLK3-214ENST00000564096 AKAP17AQ02040 695 aaKnown RBP14.91□□□□□ -0.02
CLK3-214ENST00000564096 PRKG1Q13976 671 aa14.91□□□□□ -0.02
CLK3-214ENST00000564096 CCDC96Q2M329 555 aa14.91□□□□□ -0.02
CLK3-214ENST00000564096 GPATCH4Q5T3I0 446 aaKnown RBP14.91□□□□□ -0.02
CLK3-214ENST00000564096 TMTC3Q6ZXV5 915 aa14.91□□□□□ -0.02
CLK3-214ENST00000564096 ANKRD13AQ8IZ07 590 aa14.91□□□□□ -0.02
CLK3-214ENST00000564096 WASF1Q92558 559 aa14.91□□□□□ -0.02
CLK3-214ENST00000564096 ISY1Q9ULR0 285 aaKnown RBP14.91□□□□□ -0.02
CLK3-214ENST00000564096 MTMR7Q9Y216 660 aa14.91□□□□□ -0.02
CLK3-214ENST00000564096 UNCXA6NJT0 531 aa14.9□□□□□ -0.02
CLK3-214ENST00000564096 PDHBP11177 359 aa14.9□□□□□ -0.02
CLK3-214ENST00000564096 SLC1A4P43007 532 aa14.9□□□□□ -0.02
CLK3-214ENST00000564096 USP14P54578 494 aa14.9□□□□□ -0.02
CLK3-214ENST00000564096 MAP3K11Q16584 847 aa14.9□□□□□ -0.02
CLK3-214ENST00000564096 SHROOM1Q2M3G4 852 aaPredicted RBP14.9□□□□□ -0.02
CLK3-214ENST00000564096 NSUN7Q8NE18 718 aaKnown RBP14.9□□□□□ -0.02
CLK3-214ENST00000564096 ZNF408Q9H9D4 720 aa14.9□□□□□ -0.02
CLK3-214ENST00000564096 CIZ1Q9ULV3 898 aaPredicted RBP14.9□□□□□ -0.02
CLK3-214ENST00000564096 TMX2Q9Y320 296 aa14.9□□□□□ -0.02
CLK3-214ENST00000564096 ATAD5Q96QE3 1844 aa14.89□□□□□ -0.03
CLK3-214ENST00000564096 USP2O75604 605 aaPredicted RBP14.89□□□□□ -0.03
CLK3-214ENST00000564096 SNHG28P0DPA3 235 aa14.89□□□□□ -0.03
CLK3-214ENST00000564096 IFNAR1P17181 557 aa14.89□□□□□ -0.03
CLK3-214ENST00000564096 PTPRAP18433 802 aa14.89□□□□□ -0.03
CLK3-214ENST00000564096 GJB2P29033 226 aa14.89□□□□□ -0.03
CLK3-214ENST00000564096 CDC27P30260 824 aa14.89□□□□□ -0.03
CLK3-214ENST00000564096 C1QTNF8P60827 252 aa14.89□□□□□ -0.03
CLK3-214ENST00000564096 JAG1P78504 1218 aa14.89□□□□□ -0.03
CLK3-214ENST00000564096 VGLL4Q14135 290 aa14.89□□□□□ -0.03
CLK3-214ENST00000564096 SLFN13Q68D06 897 aa14.89□□□□□ -0.03
CLK3-214ENST00000564096 SMARCC2Q8TAQ2 1214 aa14.89□□□□□ -0.03
CLK3-214ENST00000564096 LPAR1Q92633 364 aa14.89□□□□□ -0.03
CLK3-214ENST00000564096 ZKSCAN4Q969J2 545 aaPredicted RBP14.89□□□□□ -0.03
CLK3-214ENST00000564096 GMCL1Q96IK5 515 aa14.89□□□□□ -0.03
CLK3-214ENST00000564096 RNF26Q9BY78 433 aaPredicted RBP14.89□□□□□ -0.03
CLK3-214ENST00000564096 VCPKMTQ9H867 229 aa14.89□□□□□ -0.03
CLK3-214ENST00000564096 FMNL1O95466 1100 aaPredicted RBP14.88□□□□□ -0.03
CLK3-214ENST00000564096 NDUFB10O96000 172 aa14.88□□□□□ -0.03
CLK3-214ENST00000564096 ADD1P35611 737 aaKnown RBP14.88□□□□□ -0.03
CLK3-214ENST00000564096 SSRP1Q08945 709 aaKnown RBP14.88□□□□□ -0.03
CLK3-214ENST00000564096 ZNF543Q08ER8 600 aa14.88□□□□□ -0.03
CLK3-214ENST00000564096 ZNF280CQ8ND82 737 aa14.88□□□□□ -0.03
CLK3-214ENST00000564096 WDR18Q9BV38 432 aa14.88□□□□□ -0.03
CLK3-214ENST00000564096 SLC26A6Q9BXS9 759 aa14.88□□□□□ -0.03
CLK3-214ENST00000564096 KIAA1683Q9H0B3 1180 aa14.88□□□□□ -0.03
CLK3-214ENST00000564096 SNCAIPQ9Y6H5 919 aa14.88□□□□□ -0.03
CLK3-214ENST00000564096 PALM3A6NDB9 673 aaPredicted RBP14.87□□□□□ -0.03
CLK3-214ENST00000564096 USP17L10C9JJH3 530 aa14.87□□□□□ -0.03
CLK3-214ENST00000564096 F5H6K3 240 aa14.87□□□□□ -0.03
CLK3-214ENST00000564096 TRAF5O00463 557 aa14.87□□□□□ -0.03
CLK3-214ENST00000564096 JAK2O60674 1132 aa14.87□□□□□ -0.03
CLK3-214ENST00000564096 CELF2O95319 508 aaKnown RBP14.87□□□□□ -0.03
CLK3-214ENST00000564096 DEXIO95424 95 aa14.87□□□□□ -0.03
CLK3-214ENST00000564096 SMARCA1P28370 1054 aa14.87□□□□□ -0.03
CLK3-214ENST00000564096 ECE1P42892 770 aa14.87□□□□□ -0.03
CLK3-214ENST00000564096 KLRC3Q07444 240 aa14.87□□□□□ -0.03
CLK3-214ENST00000564096 C2orf69Q8N8R5 385 aa14.87□□□□□ -0.03
CLK3-214ENST00000564096 SMC1BQ8NDV3 1235 aa14.87□□□□□ -0.03
CLK3-214ENST00000564096 RBM46Q8TBY0 533 aaKnown RBP14.87□□□□□ -0.03
CLK3-214ENST00000564096 DDX11Q96FC9 970 aa14.87□□□□□ -0.03
CLK3-214ENST00000564096 SPZ1Q9BXG8 430 aa14.87□□□□□ -0.03
CLK3-214ENST00000564096 GBA2Q9HCG7 927 aaPredicted RBP14.87□□□□□ -0.03
CLK3-214ENST00000564096 FAM217BQ9NTX9 383 aaPredicted RBP14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms