RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 EFR3BQ9Y2G0 817 aa5.43□□□□□ -1.54
VPS35-203ENST00000562420 RNF114Q9Y508 228 aa5.43□□□□□ -1.54
VPS35-203ENST00000562420 ST14Q9Y5Y6 855 aa5.43□□□□□ -1.54
VPS35-203ENST00000562420 SLC12A7Q9Y666 1083 aa5.43□□□□□ -1.54
VPS35-203ENST00000562420 SRFP11831 508 aa5.42□□□□□ -1.54
VPS35-203ENST00000562420 ATF4P18848 351 aaPredicted RBP5.42□□□□□ -1.54
VPS35-203ENST00000562420 ITIH2P19823 946 aa5.42□□□□□ -1.54
VPS35-203ENST00000562420 GBP1P32455 592 aa5.42□□□□□ -1.54
VPS35-203ENST00000562420 GIPRP48546 466 aa5.42□□□□□ -1.54
VPS35-203ENST00000562420 TNNI2P48788 182 aa5.42□□□□□ -1.54
VPS35-203ENST00000562420 VPS37DQ86XT2 251 aa5.42□□□□□ -1.54
VPS35-203ENST00000562420 DTWD2Q8NBA8 298 aa5.42□□□□□ -1.54
VPS35-203ENST00000562420 BAHD1Q8TBE0 780 aaPredicted RBP5.42□□□□□ -1.54
VPS35-203ENST00000562420 SMARCC1Q92922 1105 aaPredicted RBP5.42□□□□□ -1.54
VPS35-203ENST00000562420 Q96M66 194 aa5.42□□□□□ -1.54
VPS35-203ENST00000562420 KIF2CQ99661 725 aa5.42□□□□□ -1.54
VPS35-203ENST00000562420 SRRTQ9BXP5 876 aaKnown RBP5.42□□□□□ -1.54
VPS35-203ENST00000562420 GPR62Q9BZJ7 368 aa5.42□□□□□ -1.54
VPS35-203ENST00000562420 CAPN10Q9HC96 672 aa5.42□□□□□ -1.54
VPS35-203ENST00000562420 SEMA3GQ9NS98 782 aa5.42□□□□□ -1.54
VPS35-203ENST00000562420 PRR13Q9NZ81 148 aa5.42□□□□□ -1.54
VPS35-203ENST00000562420 PPT2Q9UMR5 302 aa5.42□□□□□ -1.54
VPS35-203ENST00000562420 CNTNAP4Q9C0A0 1308 aa5.42□□□□□ -1.54
VPS35-203ENST00000562420 PRR33A8MZF0 331 aa5.41□□□□□ -1.54
VPS35-203ENST00000562420 FAM155AB1AL88 458 aaPredicted RBP5.41□□□□□ -1.54
VPS35-203ENST00000562420 GUCY2CP25092 1073 aa5.41□□□□□ -1.54
VPS35-203ENST00000562420 ZC3H6P61129 1189 aaKnown RBP5.41□□□□□ -1.54
VPS35-203ENST00000562420 TNK2Q07912 1038 aa5.41□□□□□ -1.54
VPS35-203ENST00000562420 LSRQ86X29 649 aaPredicted RBP5.41□□□□□ -1.54
VPS35-203ENST00000562420 DHRS1Q96LJ7 313 aa5.41□□□□□ -1.54
VPS35-203ENST00000562420 C8orf37Q96NL8 207 aa5.41□□□□□ -1.54
VPS35-203ENST00000562420 GMLQ99445 158 aa5.41□□□□□ -1.54
VPS35-203ENST00000562420 TRIT1Q9H3H1 467 aaKnown RBP5.41□□□□□ -1.54
VPS35-203ENST00000562420 PAK6Q9NQU5 681 aaPredicted RBP5.41□□□□□ -1.54
VPS35-203ENST00000562420 LMCD1Q9NZU5 365 aa5.41□□□□□ -1.54
VPS35-203ENST00000562420 CLEC3AO75596 197 aa5.4□□□□□ -1.54
VPS35-203ENST00000562420 NASPP49321 788 aaPredicted RBP5.4□□□□□ -1.54
VPS35-203ENST00000562420 CASP7P55210 303 aa5.4□□□□□ -1.54
VPS35-203ENST00000562420 EIF6P56537 245 aaKnown RBP5.4□□□□□ -1.54
VPS35-203ENST00000562420 CHMP4BP1P59074 171 aa5.4□□□□□ -1.54
VPS35-203ENST00000562420 AOC3Q16853 763 aa5.4□□□□□ -1.54
VPS35-203ENST00000562420 NBPF12Q5TAG4 269 aaPredicted RBP5.4□□□□□ -1.54
VPS35-203ENST00000562420 ANGEL2Q5VTE6 544 aaKnown RBP5.4□□□□□ -1.54
VPS35-203ENST00000562420 TMPRSS7Q7RTY8 843 aa5.4□□□□□ -1.54
VPS35-203ENST00000562420 FLCNQ8NFG4 579 aa5.4□□□□□ -1.54
VPS35-203ENST00000562420 ENOX1Q8TC92 643 aaKnown RBP5.4□□□□□ -1.54
VPS35-203ENST00000562420 SHDQ96IW2 340 aa5.4□□□□□ -1.54
VPS35-203ENST00000562420 CRBNQ96SW2 442 aa5.4□□□□□ -1.54
VPS35-203ENST00000562420 ANTXR1Q9H6X2 564 aa5.4□□□□□ -1.54
VPS35-203ENST00000562420 CBX7O95931 251 aa5.39□□□□□ -1.55
VPS35-203ENST00000562420 ACRP10323 421 aa5.39□□□□□ -1.55
VPS35-203ENST00000562420 FUT4P22083 530 aa5.39□□□□□ -1.55
VPS35-203ENST00000562420 PMS1P54277 932 aaKnown RBP5.39□□□□□ -1.55
VPS35-203ENST00000562420 GAB4Q2WGN9 574 aa5.39□□□□□ -1.55
VPS35-203ENST00000562420 BBS9Q3SYG4 887 aa5.39□□□□□ -1.55
VPS35-203ENST00000562420 HSPA12BQ96MM6 686 aa5.39□□□□□ -1.55
VPS35-203ENST00000562420 SLC9A7Q96T83 725 aa5.39□□□□□ -1.55
VPS35-203ENST00000562420 SUCOQ9UBS9 1254 aaKnown RBP5.39□□□□□ -1.55
VPS35-203ENST00000562420 FGRP09769 529 aa5.38□□□□□ -1.55
VPS35-203ENST00000562420 CD8BP10966 210 aa5.38□□□□□ -1.55
VPS35-203ENST00000562420 POLR2BP30876 1174 aaKnown RBP5.38□□□□□ -1.55
VPS35-203ENST00000562420 ARID5AQ03989 594 aa5.38□□□□□ -1.55
VPS35-203ENST00000562420 CBLL1Q75N03 491 aa5.38□□□□□ -1.55
VPS35-203ENST00000562420 SPRED2Q7Z698 418 aa5.38□□□□□ -1.55
VPS35-203ENST00000562420 SLC6A18Q96N87 628 aa5.38□□□□□ -1.55
VPS35-203ENST00000562420 KRTAP4-2Q9BYR5 136 aa5.38□□□□□ -1.55
VPS35-203ENST00000562420 DUSP15Q9H1R2 295 aaPredicted RBP5.38□□□□□ -1.55
VPS35-203ENST00000562420 PHAXQ9H814 394 aaKnown RBP5.38□□□□□ -1.55
VPS35-203ENST00000562420 GPATCH2Q9NW75 528 aa5.38□□□□□ -1.55
VPS35-203ENST00000562420 FZD5Q13467 585 aa5.37□□□□□ -1.55
VPS35-203ENST00000562420 NBPF9Q3BBW0 867 aa5.37□□□□□ -1.55
VPS35-203ENST00000562420 ANKRD39Q53RE8 183 aa5.37□□□□□ -1.55
VPS35-203ENST00000562420 FBXW10Q5XX13 1052 aa5.37□□□□□ -1.55
VPS35-203ENST00000562420 SLC23A3Q6PIS1 610 aa5.37□□□□□ -1.55
VPS35-203ENST00000562420 CCDC81Q6ZN84 652 aa5.37□□□□□ -1.55
VPS35-203ENST00000562420 TSPYL5Q86VY4 417 aaPredicted RBP5.37□□□□□ -1.55
VPS35-203ENST00000562420 TMEM192Q8IY95 271 aa5.37□□□□□ -1.55
VPS35-203ENST00000562420 SYTL5Q8TDW5 730 aaPredicted RBP5.37□□□□□ -1.55
VPS35-203ENST00000562420 H3BS24 57 aa5.36□□□□□ -1.55
VPS35-203ENST00000562420 BNIP3Q12983 259 aa5.36□□□□□ -1.55
VPS35-203ENST00000562420 TNNI3KQ59H18 835 aa5.36□□□□□ -1.55
VPS35-203ENST00000562420 CDKAL1Q5VV42 579 aa5.36□□□□□ -1.55
VPS35-203ENST00000562420 UNC5AQ6ZN44 842 aa5.36□□□□□ -1.55
VPS35-203ENST00000562420 ZNF574Q6ZN55 896 aaPredicted RBP5.36□□□□□ -1.55
VPS35-203ENST00000562420 TP53INP2Q8IXH6 220 aa5.36□□□□□ -1.55
VPS35-203ENST00000562420 CPLX3Q8WVH0 158 aa5.36□□□□□ -1.55
VPS35-203ENST00000562420 CCDC120Q96HB5 630 aa5.36□□□□□ -1.55
VPS35-203ENST00000562420 ASCC2Q9H1I8 757 aaPredicted RBP5.36□□□□□ -1.55
VPS35-203ENST00000562420 ZNF214Q9UL59 606 aaPredicted RBP5.36□□□□□ -1.55
VPS35-203ENST00000562420 ARID1BQ8NFD5 2236 aaPredicted RBP5.36□□□□□ -1.55
VPS35-203ENST00000562420 RANGAP1P46060 587 aaPredicted RBP5.35□□□□□ -1.55
VPS35-203ENST00000562420 NMIQ13287 307 aaPredicted RBP5.35□□□□□ -1.55
VPS35-203ENST00000562420 IKZF1Q13422 519 aa5.35□□□□□ -1.55
VPS35-203ENST00000562420 TTC6Q86TZ1 520 aa5.35□□□□□ -1.55
VPS35-203ENST00000562420 ABI1Q8IZP0 508 aa5.35□□□□□ -1.55
VPS35-203ENST00000562420 ZNF655Q8N720 491 aaPredicted RBP5.35□□□□□ -1.55
VPS35-203ENST00000562420 DAGLBQ8NCG7 672 aa5.35□□□□□ -1.55
VPS35-203ENST00000562420 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.35□□□□□ -1.55
VPS35-203ENST00000562420 HDAC8Q9BY41 377 aa5.35□□□□□ -1.55
VPS35-203ENST00000562420 ATP13A1Q9HD20 1204 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms