RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 CDC6Q99741 560 aa4.3□□□□□ -1.72
TRAV28-201ENST00000557548 WDR18Q9BV38 432 aa4.3□□□□□ -1.72
TRAV28-201ENST00000557548 WNT10AQ9GZT5 417 aa4.3□□□□□ -1.72
TRAV28-201ENST00000557548 CAAP1Q9H8G2 361 aa4.3□□□□□ -1.72
TRAV28-201ENST00000557548 TJP2Q9UDY2 1190 aa4.3□□□□□ -1.72
TRAV28-201ENST00000557548 MRPS23Q9Y3D9 190 aaKnown RBP4.3□□□□□ -1.72
TRAV28-201ENST00000557548 PCDHGC5Q9Y5F6 944 aa4.3□□□□□ -1.72
TRAV28-201ENST00000557548 TRBV23-1A0A0A0MS06 115 aa4.29□□□□□ -1.72
TRAV28-201ENST00000557548 TRAV20A0A0B4J274 112 aa4.29□□□□□ -1.72
TRAV28-201ENST00000557548 CCDC163A0A0D9SF12 145 aa4.29□□□□□ -1.72
TRAV28-201ENST00000557548 LOC100289279A0A1B0GTE1 492 aa4.29□□□□□ -1.72
TRAV28-201ENST00000557548 PLD2O14939 933 aa4.29□□□□□ -1.72
TRAV28-201ENST00000557548 DDX3YO15523 660 aaKnown RBP4.29□□□□□ -1.72
TRAV28-201ENST00000557548 AOC2O75106 756 aa4.29□□□□□ -1.72
TRAV28-201ENST00000557548 RFPL3O75679 317 aa4.29□□□□□ -1.72
TRAV28-201ENST00000557548 DLGAP3O95886 979 aa4.29□□□□□ -1.72
TRAV28-201ENST00000557548 SOX5P35711 763 aa4.29□□□□□ -1.72
TRAV28-201ENST00000557548 PMS1P54277 932 aaKnown RBP4.29□□□□□ -1.72
TRAV28-201ENST00000557548 YARSP54577 528 aaKnown RBP4.29□□□□□ -1.72
TRAV28-201ENST00000557548 NFKB2Q00653 900 aa4.29□□□□□ -1.72
TRAV28-201ENST00000557548 BBS9Q3SYG4 887 aa4.29□□□□□ -1.72
TRAV28-201ENST00000557548 ZBTB37Q5TC79 503 aa4.29□□□□□ -1.72
TRAV28-201ENST00000557548 C20orf204Q6ZNR8 217 aa4.29□□□□□ -1.72
TRAV28-201ENST00000557548 C8orf86Q6ZUL3 223 aa4.29□□□□□ -1.72
TRAV28-201ENST00000557548 RNF180Q86T96 592 aa4.29□□□□□ -1.72
TRAV28-201ENST00000557548 WFDC8Q8IUA0 241 aa4.29□□□□□ -1.72
TRAV28-201ENST00000557548 RAVER1Q8IY67 606 aaKnown RBP4.29□□□□□ -1.72
TRAV28-201ENST00000557548 TMEM192Q8IY95 271 aa4.29□□□□□ -1.72
TRAV28-201ENST00000557548 GALNT11Q8NCW6 608 aa4.29□□□□□ -1.72
TRAV28-201ENST00000557548 PPP1R14AQ96A00 147 aa4.29□□□□□ -1.72
TRAV28-201ENST00000557548 TMEM87BQ96K49 555 aa4.29□□□□□ -1.72
TRAV28-201ENST00000557548 CLUHP3Q96NS8 147 aa4.29□□□□□ -1.72
TRAV28-201ENST00000557548 KIF2CQ99661 725 aa4.29□□□□□ -1.72
TRAV28-201ENST00000557548 HAUS7Q99871 368 aa4.29□□□□□ -1.72
TRAV28-201ENST00000557548 DPH2Q9BQC3 489 aaPredicted RBP4.29□□□□□ -1.72
TRAV28-201ENST00000557548 DHRS4Q9BTZ2 278 aa4.29□□□□□ -1.72
TRAV28-201ENST00000557548 TARS2Q9BW92 718 aaKnown RBP4.29□□□□□ -1.72
TRAV28-201ENST00000557548 LGR4Q9BXB1 951 aa4.29□□□□□ -1.72
TRAV28-201ENST00000557548 PCMTD2Q9NV79 361 aa4.29□□□□□ -1.72
TRAV28-201ENST00000557548 LRP2BPQ9P2M1 347 aa4.29□□□□□ -1.72
TRAV28-201ENST00000557548 SUCOQ9UBS9 1254 aaKnown RBP4.29□□□□□ -1.72
TRAV28-201ENST00000557548 SUSD2Q9UGT4 822 aa4.29□□□□□ -1.72
TRAV28-201ENST00000557548 MCM8Q9UJA3 840 aa4.29□□□□□ -1.72
TRAV28-201ENST00000557548 THRAP3Q9Y2W1 955 aaKnown RBP4.29□□□□□ -1.72
TRAV28-201ENST00000557548 ANKRD34BA5PLL1 514 aa4.28□□□□□ -1.72
TRAV28-201ENST00000557548 GSG1L2A8MUP6 293 aa4.28□□□□□ -1.72
TRAV28-201ENST00000557548 C9IYK1 514 aa4.28□□□□□ -1.72
TRAV28-201ENST00000557548 TM4SF5O14894 197 aa4.28□□□□□ -1.72
TRAV28-201ENST00000557548 LILRB5O75023 590 aa4.28□□□□□ -1.72
TRAV28-201ENST00000557548 ADAM11O75078 769 aa4.28□□□□□ -1.72
TRAV28-201ENST00000557548 UBOX5O94941 541 aa4.28□□□□□ -1.72
TRAV28-201ENST00000557548 MAP4K4O95819 1239 aaPredicted RBP4.28□□□□□ -1.72
TRAV28-201ENST00000557548 EPHX1P07099 455 aa4.28□□□□□ -1.72
TRAV28-201ENST00000557548 SLFN14P0C7P3 912 aa4.28□□□□□ -1.72
TRAV28-201ENST00000557548 NAT2P11245 290 aa4.28□□□□□ -1.72
TRAV28-201ENST00000557548 CCNFP41002 786 aa4.28□□□□□ -1.72
TRAV28-201ENST00000557548 ZNF143P52747 638 aaPredicted RBP4.28□□□□□ -1.72
TRAV28-201ENST00000557548 PPP2R2AP63151 447 aa4.28□□□□□ -1.72
TRAV28-201ENST00000557548 EXOSC10Q01780 885 aaKnown RBP4.28□□□□□ -1.72
TRAV28-201ENST00000557548 ID3Q02535 119 aa4.28□□□□□ -1.72
TRAV28-201ENST00000557548 RING1Q06587 406 aa4.28□□□□□ -1.72
TRAV28-201ENST00000557548 HSP90AA2PQ14568 343 aaPredicted RBP4.28□□□□□ -1.72
TRAV28-201ENST00000557548 SETDB1Q15047 1291 aa4.28□□□□□ -1.72
TRAV28-201ENST00000557548 FNDC3BQ53EP0 1204 aaKnown RBP4.28□□□□□ -1.72
TRAV28-201ENST00000557548 HP1BP3Q5SSJ5 553 aaPredicted RBP4.28□□□□□ -1.72
TRAV28-201ENST00000557548 HEATR6Q6AI08 1181 aaKnown RBP4.28□□□□□ -1.72
TRAV28-201ENST00000557548 CNNM4Q6P4Q7 775 aa4.28□□□□□ -1.72
TRAV28-201ENST00000557548 SLCO4C1Q6ZQN7 724 aa4.28□□□□□ -1.72
TRAV28-201ENST00000557548 CERS3Q8IU89 383 aa4.28□□□□□ -1.72
TRAV28-201ENST00000557548 MCATQ8IVS2 390 aaKnown RBP4.28□□□□□ -1.72
TRAV28-201ENST00000557548 SLFN12Q8IYM2 578 aa4.28□□□□□ -1.72
TRAV28-201ENST00000557548 KLHL23Q8NBE8 558 aa4.28□□□□□ -1.72
TRAV28-201ENST00000557548 BTBD6Q96KE9 485 aa4.28□□□□□ -1.72
TRAV28-201ENST00000557548 DHRS1Q96LJ7 313 aa4.28□□□□□ -1.72
TRAV28-201ENST00000557548 FGD4Q96M96 766 aa4.28□□□□□ -1.72
TRAV28-201ENST00000557548 IPO9Q96P70 1041 aaKnown RBP4.28□□□□□ -1.72
TRAV28-201ENST00000557548 AARSD1Q9BTE6 412 aaKnown RBP4.28□□□□□ -1.72
TRAV28-201ENST00000557548 RUSC1Q9BVN2 902 aa4.28□□□□□ -1.72
TRAV28-201ENST00000557548 FBRSQ9HAH7 460 aa4.28□□□□□ -1.72
TRAV28-201ENST00000557548 GABBR1Q9UBS5 961 aa4.28□□□□□ -1.72
TRAV28-201ENST00000557548 APEX2Q9UBZ4 518 aa4.28□□□□□ -1.72
TRAV28-201ENST00000557548 EID1Q9Y6B2 187 aa4.28□□□□□ -1.72
TRAV28-201ENST00000557548 CCDC194A0A1B0GVG4 234 aa4.27□□□□□ -1.73
TRAV28-201ENST00000557548 M0R082 166 aa4.27□□□□□ -1.73
TRAV28-201ENST00000557548 RGS13O14921 159 aa4.27□□□□□ -1.73
TRAV28-201ENST00000557548 TMPRSS2O15393 492 aa4.27□□□□□ -1.73
TRAV28-201ENST00000557548 APBA3O96018 575 aa4.27□□□□□ -1.73
TRAV28-201ENST00000557548 ITGAVP06756 1048 aa4.27□□□□□ -1.73
TRAV28-201ENST00000557548 EPXP11678 715 aa4.27□□□□□ -1.73
TRAV28-201ENST00000557548 SDSP20132 328 aa4.27□□□□□ -1.73
TRAV28-201ENST00000557548 ERVK-24P63145 666 aa4.27□□□□□ -1.73
TRAV28-201ENST00000557548 NKG7Q16617 165 aa4.27□□□□□ -1.73
TRAV28-201ENST00000557548 AKAP4Q5JQC9 854 aa4.27□□□□□ -1.73
TRAV28-201ENST00000557548 AXDND1Q5T1B0 1012 aaPredicted RBP4.27□□□□□ -1.73
TRAV28-201ENST00000557548 DCAF15Q66K64 600 aa4.27□□□□□ -1.73
TRAV28-201ENST00000557548 MSL1Q68DK7 614 aa4.27□□□□□ -1.73
TRAV28-201ENST00000557548 ZNF227Q86WZ6 799 aa4.27□□□□□ -1.73
TRAV28-201ENST00000557548 MRPL41Q8IXM3 137 aaKnown RBP4.27□□□□□ -1.73
TRAV28-201ENST00000557548 LRRN4CLQ8ND94 238 aa4.27□□□□□ -1.73
TRAV28-201ENST00000557548 ATL2Q8NHH9 583 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms