RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 USP17L24Q0WX57 530 aa11.45□□□□□ -0.58
SYNE2-224ENST00000557024 TFCP2Q12800 502 aa11.45□□□□□ -0.58
SYNE2-224ENST00000557024 GRB14Q14449 540 aa11.45□□□□□ -0.58
SYNE2-224ENST00000557024 SNX17Q15036 470 aa11.45□□□□□ -0.58
SYNE2-224ENST00000557024 TGFBRAP1Q8WUH2 860 aa11.45□□□□□ -0.58
SYNE2-224ENST00000557024 FEZ1Q99689 392 aa11.45□□□□□ -0.58
SYNE2-224ENST00000557024 NOL10Q9BSC4 688 aaKnown RBP11.45□□□□□ -0.58
SYNE2-224ENST00000557024 COPRSQ9NQ92 184 aa11.45□□□□□ -0.58
SYNE2-224ENST00000557024 AATFQ9NY61 560 aaKnown RBP eCLIP11.45□□□□□ -0.58
SYNE2-224ENST00000557024 BTBD7Q9P203 1132 aa11.45□□□□□ -0.58
SYNE2-224ENST00000557024 PALD1Q9ULE6 856 aa11.45□□□□□ -0.58
SYNE2-224ENST00000557024 FLT1P17948 1338 aa11.44□□□□□ -0.58
SYNE2-224ENST00000557024 GH2P01242 217 aa11.44□□□□□ -0.58
SYNE2-224ENST00000557024 DNAJB2P25686 324 aa11.44□□□□□ -0.58
SYNE2-224ENST00000557024 TLE2Q04725 743 aa11.44□□□□□ -0.58
SYNE2-224ENST00000557024 GORABQ5T7V8 394 aa11.44□□□□□ -0.58
SYNE2-224ENST00000557024 METTL16Q86W50 562 aaKnown RBP11.44□□□□□ -0.58
SYNE2-224ENST00000557024 FOXP4Q8IVH2 680 aaPredicted RBP11.44□□□□□ -0.58
SYNE2-224ENST00000557024 PPM1EQ8WY54 764 aa11.44□□□□□ -0.58
SYNE2-224ENST00000557024 SLC39A7Q92504 469 aa11.44□□□□□ -0.58
SYNE2-224ENST00000557024 FAM122AQ96E09 287 aa11.44□□□□□ -0.58
SYNE2-224ENST00000557024 NEUROD6Q96NK8 337 aa11.44□□□□□ -0.58
SYNE2-224ENST00000557024 GINM1Q9NU53 330 aa11.44□□□□□ -0.58
SYNE2-224ENST00000557024 LRP2BPQ9P2M1 347 aa11.44□□□□□ -0.58
SYNE2-224ENST00000557024 SAP30BPQ9UHR5 308 aaKnown RBP11.44□□□□□ -0.58
SYNE2-224ENST00000557024 AKAP2Q9Y2D5 859 aa11.44□□□□□ -0.58
SYNE2-224ENST00000557024 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.44□□□□□ -0.58
SYNE2-224ENST00000557024 ATAD5Q96QE3 1844 aa11.44□□□□□ -0.58
SYNE2-224ENST00000557024 TTLL13PA6NNM8 815 aa11.43□□□□□ -0.58
SYNE2-224ENST00000557024 IGHA2P01877 340 aa11.43□□□□□ -0.58
SYNE2-224ENST00000557024 C7P10643 843 aa11.43□□□□□ -0.58
SYNE2-224ENST00000557024 DPP9Q86TI2 863 aa11.43□□□□□ -0.58
SYNE2-224ENST00000557024 ADAMTS19Q8TE59 1207 aa11.43□□□□□ -0.58
SYNE2-224ENST00000557024 C12orf42Q96LP6 360 aa11.43□□□□□ -0.58
SYNE2-224ENST00000557024 ZNF576Q9H609 170 aa11.43□□□□□ -0.58
SYNE2-224ENST00000557024 FRMPD3Q5JV73 1810 aa11.42□□□□□ -0.58
SYNE2-224ENST00000557024 ZBED9Q6R2W3 1325 aa11.42□□□□□ -0.58
SYNE2-224ENST00000557024 SEPT4O43236 478 aa11.42□□□□□ -0.58
SYNE2-224ENST00000557024 BAG3O95817 575 aa11.42□□□□□ -0.58
SYNE2-224ENST00000557024 CLTBP09497 229 aa11.42□□□□□ -0.58
SYNE2-224ENST00000557024 VCAM1P19320 739 aa11.42□□□□□ -0.58
SYNE2-224ENST00000557024 ADORA2AP29274 412 aa11.42□□□□□ -0.58
SYNE2-224ENST00000557024 LRRC41Q15345 812 aa11.42□□□□□ -0.58
SYNE2-224ENST00000557024 FAM47AQ5JRC9 791 aa11.42□□□□□ -0.58
SYNE2-224ENST00000557024 PRAMEF19Q5SWL8 479 aa11.42□□□□□ -0.58
SYNE2-224ENST00000557024 OLFML2BQ68BL8 750 aa11.42□□□□□ -0.58
SYNE2-224ENST00000557024 NAA16Q6N069 864 aaPredicted RBP11.42□□□□□ -0.58
SYNE2-224ENST00000557024 CATSPERGQ6ZRH7 1159 aa11.42□□□□□ -0.58
SYNE2-224ENST00000557024 METRNQ9UJH8 293 aa11.42□□□□□ -0.58
SYNE2-224ENST00000557024 TACC3Q9Y6A5 838 aa11.42□□□□□ -0.58
SYNE2-224ENST00000557024 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.41□□□□□ -0.58
SYNE2-224ENST00000557024 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.41□□□□□ -0.58
SYNE2-224ENST00000557024 SPDYE16A6NNV3 312 aaPredicted RBP11.41□□□□□ -0.58
SYNE2-224ENST00000557024 PQBP1O60828 265 aaKnown RBP11.41□□□□□ -0.58
SYNE2-224ENST00000557024 HLA-DOAP06340 250 aa11.41□□□□□ -0.58
SYNE2-224ENST00000557024 RAG1P15918 1043 aa11.41□□□□□ -0.58
SYNE2-224ENST00000557024 PLCG2P16885 1265 aa11.41□□□□□ -0.58
SYNE2-224ENST00000557024 ARID4AP29374 1257 aaPredicted RBP11.41□□□□□ -0.58
SYNE2-224ENST00000557024 MCAMP43121 646 aa11.41□□□□□ -0.58
SYNE2-224ENST00000557024 FPGSQ05932 587 aa11.41□□□□□ -0.58
SYNE2-224ENST00000557024 RAB3GAP1Q15042 981 aa11.41□□□□□ -0.58
SYNE2-224ENST00000557024 C1orf53Q5VUE5 145 aa11.41□□□□□ -0.58
SYNE2-224ENST00000557024 LBX2Q6XYB7 198 aa11.41□□□□□ -0.58
SYNE2-224ENST00000557024 ADGRA1Q86SQ6 560 aa11.41□□□□□ -0.58
SYNE2-224ENST00000557024 ACER1Q8TDN7 264 aa11.41□□□□□ -0.58
SYNE2-224ENST00000557024 ATXN2LQ8WWM7 1075 aaKnown RBP11.41□□□□□ -0.58
SYNE2-224ENST00000557024 TIFAQ96CG3 184 aa11.41□□□□□ -0.58
SYNE2-224ENST00000557024 ASB2Q96Q27 587 aa11.41□□□□□ -0.58
SYNE2-224ENST00000557024 KIAA1683Q9H0B3 1180 aa11.41□□□□□ -0.58
SYNE2-224ENST00000557024 RPAP3Q9H6T3 665 aaPredicted RBP11.41□□□□□ -0.58
SYNE2-224ENST00000557024 SNRKQ9NRH2 765 aa11.41□□□□□ -0.58
SYNE2-224ENST00000557024 BMP2KQ9NSY1 1161 aaPredicted RBP11.41□□□□□ -0.58
SYNE2-224ENST00000557024 THEGQ9P2T0 379 aa11.41□□□□□ -0.58
SYNE2-224ENST00000557024 SIPA1L1O43166 1804 aa11.4□□□□□ -0.58
SYNE2-224ENST00000557024 KIAA0355O15063 1070 aa11.4□□□□□ -0.58
SYNE2-224ENST00000557024 COBLO75128 1261 aa11.4□□□□□ -0.58
SYNE2-224ENST00000557024 TIE1P35590 1138 aa11.4□□□□□ -0.58
SYNE2-224ENST00000557024 USP14P54578 494 aa11.4□□□□□ -0.58
SYNE2-224ENST00000557024 PPP4CP60510 307 aa11.4□□□□□ -0.58
SYNE2-224ENST00000557024 MAP3K12Q12852 859 aa11.4□□□□□ -0.58
SYNE2-224ENST00000557024 ATF7IPQ6VMQ6 1270 aa11.4□□□□□ -0.58
SYNE2-224ENST00000557024 UHRF1Q96T88 793 aaPredicted RBP11.4□□□□□ -0.58
SYNE2-224ENST00000557024 GAS2L1Q99501 681 aaPredicted RBP11.4□□□□□ -0.58
SYNE2-224ENST00000557024 MEIS3Q99687 375 aa11.4□□□□□ -0.58
SYNE2-224ENST00000557024 MOV10L1Q9BXT6 1211 aaKnown RBP11.4□□□□□ -0.58
SYNE2-224ENST00000557024 PRDM12Q9H4Q4 367 aa11.4□□□□□ -0.58
SYNE2-224ENST00000557024 SMC4Q9NTJ3 1288 aa11.4□□□□□ -0.58
SYNE2-224ENST00000557024 PHF24Q9UPV7 400 aa11.4□□□□□ -0.58
SYNE2-224ENST00000557024 SRGAP3O43295 1099 aa11.39□□□□□ -0.59
SYNE2-224ENST00000557024 CCDC85BQ15834 202 aaPredicted RBP11.39□□□□□ -0.59
SYNE2-224ENST00000557024 TMEM39AQ9NV64 488 aa11.39□□□□□ -0.59
SYNE2-224ENST00000557024 HDAC5Q9UQL6 1122 aa11.39□□□□□ -0.59
SYNE2-224ENST00000557024 ZNF521Q96K83 1311 aa11.38□□□□□ -0.59
SYNE2-224ENST00000557024 BDP1A6H8Y1 2624 aa11.38□□□□□ -0.59
SYNE2-224ENST00000557024 STRNO43815 780 aa11.38□□□□□ -0.59
SYNE2-224ENST00000557024 PGK1P00558 417 aa11.38□□□□□ -0.59
SYNE2-224ENST00000557024 UQCRFS1P1P0C7P4 283 aa11.38□□□□□ -0.59
SYNE2-224ENST00000557024 ERCC3P19447 782 aa11.38□□□□□ -0.59
SYNE2-224ENST00000557024 PBX2P40425 430 aa11.38□□□□□ -0.59
SYNE2-224ENST00000557024 DYNLL1P63167 89 aaKnown RBP11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms