RNA–Protein interactions for RNA: ENST00000556342.1

SYNE2-221, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 5

Gene SYNE2, Length 572 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-221ENST00000556342 DEFB123Q8N688 67 aa13.14□□□□□ -0.31
SYNE2-221ENST00000556342 SNRKQ9NRH2 765 aa13.14□□□□□ -0.31
SYNE2-221ENST00000556342 GINM1Q9NU53 330 aa13.14□□□□□ -0.31
SYNE2-221ENST00000556342 RBPJLQ9UBG7 517 aa13.14□□□□□ -0.31
SYNE2-221ENST00000556342 ZBTB21Q9ULJ3 1066 aa13.14□□□□□ -0.31
SYNE2-221ENST00000556342 DDX60LQ5H9U9 1706 aaKnown RBP13.13□□□□□ -0.31
SYNE2-221ENST00000556342 PLXNB2O15031 1838 aa13.13□□□□□ -0.31
SYNE2-221ENST00000556342 COL6A1P12109 1028 aa13.13□□□□□ -0.31
SYNE2-221ENST00000556342 TRIM27P14373 513 aa13.13□□□□□ -0.31
SYNE2-221ENST00000556342 ERVK-9P63128 1117 aa13.13□□□□□ -0.31
SYNE2-221ENST00000556342 ERVK-24P63145 666 aa13.13□□□□□ -0.31
SYNE2-221ENST00000556342 CACNB2Q08289 660 aaPredicted RBP13.13□□□□□ -0.31
SYNE2-221ENST00000556342 Q3C1V9 767 aa13.13□□□□□ -0.31
SYNE2-221ENST00000556342 GPR142Q7Z601 462 aa13.13□□□□□ -0.31
SYNE2-221ENST00000556342 GTF3C2Q8WUA4 911 aaPredicted RBP13.13□□□□□ -0.31
SYNE2-221ENST00000556342 USP6NLQ92738 828 aa13.13□□□□□ -0.31
SYNE2-221ENST00000556342 TRIM34Q9BYJ4 488 aa13.13□□□□□ -0.31
SYNE2-221ENST00000556342 PORCNQ9H237 461 aa13.13□□□□□ -0.31
SYNE2-221ENST00000556342 PALD1Q9ULE6 856 aa13.13□□□□□ -0.31
SYNE2-221ENST00000556342 SIPA1L1O43166 1804 aa13.13□□□□□ -0.31
SYNE2-221ENST00000556342 CYP2E1P05181 493 aaPredicted RBP13.12□□□□□ -0.31
SYNE2-221ENST00000556342 RGS2P41220 211 aa13.12□□□□□ -0.31
SYNE2-221ENST00000556342 CCL14Q16627 93 aa13.12□□□□□ -0.31
SYNE2-221ENST00000556342 TNNI3KQ59H18 835 aa13.12□□□□□ -0.31
SYNE2-221ENST00000556342 TTC39AQ5SRH9 613 aa13.12□□□□□ -0.31
SYNE2-221ENST00000556342 MORN1Q5T089 497 aa13.12□□□□□ -0.31
SYNE2-221ENST00000556342 Q7L0L9 218 aa13.12□□□□□ -0.31
SYNE2-221ENST00000556342 CCAR1Q8IX12 1150 aaKnown RBP13.12□□□□□ -0.31
SYNE2-221ENST00000556342 APBA2Q99767 749 aa13.12□□□□□ -0.31
SYNE2-221ENST00000556342 DBNDD2Q9BQY9 259 aa13.12□□□□□ -0.31
SYNE2-221ENST00000556342 PAGR1Q9BTK6 254 aa13.12□□□□□ -0.31
SYNE2-221ENST00000556342 UBE2OQ9C0C9 1292 aaKnown RBP13.12□□□□□ -0.31
SYNE2-221ENST00000556342 GPR108Q9NPR9 543 aa13.12□□□□□ -0.31
SYNE2-221ENST00000556342 FPGT-TNNI3KV9GXZ4 949 aa13.12□□□□□ -0.31
SYNE2-221ENST00000556342 IPO8O15397 1037 aaKnown RBP13.11□□□□□ -0.31
SYNE2-221ENST00000556342 IGSF3O75054 1194 aa13.11□□□□□ -0.31
SYNE2-221ENST00000556342 HLA-DOAP06340 250 aa13.11□□□□□ -0.31
SYNE2-221ENST00000556342 COL9A1P20849 921 aa13.11□□□□□ -0.31
SYNE2-221ENST00000556342 CCND3P30281 292 aaPredicted RBP13.11□□□□□ -0.31
SYNE2-221ENST00000556342 CCDC158Q5M9N0 1113 aa13.11□□□□□ -0.31
SYNE2-221ENST00000556342 USP17L2Q6R6M4 530 aa13.11□□□□□ -0.31
SYNE2-221ENST00000556342 PLEKHH3Q7Z736 793 aa13.11□□□□□ -0.31
SYNE2-221ENST00000556342 SAP30BPQ9UHR5 308 aaKnown RBP13.11□□□□□ -0.31
SYNE2-221ENST00000556342 TNNQ9UQP3 1299 aa13.11□□□□□ -0.31
SYNE2-221ENST00000556342 STXBP5LQ9Y2K9 1186 aa13.11□□□□□ -0.31
SYNE2-221ENST00000556342 MAST2Q6P0Q8 1798 aa13.1□□□□□ -0.31
SYNE2-221ENST00000556342 GRXCR2A6NFK2 248 aa13.1□□□□□ -0.31
SYNE2-221ENST00000556342 GH2P01242 217 aa13.1□□□□□ -0.31
SYNE2-221ENST00000556342 ZAP70P43403 619 aa13.1□□□□□ -0.31
SYNE2-221ENST00000556342 LRRC26Q2I0M4 334 aa13.1□□□□□ -0.31
SYNE2-221ENST00000556342 ATF7IPQ6VMQ6 1270 aa13.1□□□□□ -0.31
SYNE2-221ENST00000556342 ZNF512BQ96KM6 892 aaPredicted RBP13.1□□□□□ -0.31
SYNE2-221ENST00000556342 C12orf42Q96LP6 360 aa13.1□□□□□ -0.31
SYNE2-221ENST00000556342 PIH1D3Q9NQM4 214 aaKnown RBP13.1□□□□□ -0.31
SYNE2-221ENST00000556342 MTMR10Q9NXD2 777 aa13.1□□□□□ -0.31
SYNE2-221ENST00000556342 RABGAP1Q9Y3P9 1069 aa13.1□□□□□ -0.31
SYNE2-221ENST00000556342 DYNLL1P63167 89 aaKnown RBP13.09□□□□□ -0.31
SYNE2-221ENST00000556342 MAP2K5Q13163 448 aa13.09□□□□□ -0.31
SYNE2-221ENST00000556342 OS9Q13438 667 aaPredicted RBP13.09□□□□□ -0.31
SYNE2-221ENST00000556342 FRAT1Q92837 279 aaPredicted RBP13.09□□□□□ -0.31
SYNE2-221ENST00000556342 CLUAP1Q96AJ1 413 aa13.09□□□□□ -0.31
SYNE2-221ENST00000556342 FEZ1Q99689 392 aa13.09□□□□□ -0.31
SYNE2-221ENST00000556342 CWC22Q9HCG8 908 aaKnown RBP13.09□□□□□ -0.31
SYNE2-221ENST00000556342 LAMA2P24043 3122 aaKnown RBP13.09□□□□□ -0.31
SYNE2-221ENST00000556342 DNAH12Q6ZR08 3092 aa13.09□□□□□ -0.31
SYNE2-221ENST00000556342 BHMG1C9JSJ3 638 aaPredicted RBP13.08□□□□□ -0.32
SYNE2-221ENST00000556342 BCAR3O75815 825 aa13.08□□□□□ -0.32
SYNE2-221ENST00000556342 CNMDO75829 334 aa13.08□□□□□ -0.32
SYNE2-221ENST00000556342 CYP7A1P22680 504 aa13.08□□□□□ -0.32
SYNE2-221ENST00000556342 CCNA1P78396 465 aa13.08□□□□□ -0.32
SYNE2-221ENST00000556342 MDM2Q00987 491 aaPredicted RBP13.08□□□□□ -0.32
SYNE2-221ENST00000556342 ZYXQ15942 572 aaKnown RBP13.08□□□□□ -0.32
SYNE2-221ENST00000556342 UNC80Q8N2C7 3258 aa13.07□□□□□ -0.32
SYNE2-221ENST00000556342 USP17L15C9J2P7 530 aa13.07□□□□□ -0.32
SYNE2-221ENST00000556342 USP17L13C9JLJ4 530 aa13.07□□□□□ -0.32
SYNE2-221ENST00000556342 USP17L11C9JVI0 530 aa13.07□□□□□ -0.32
SYNE2-221ENST00000556342 USP17L18D6R9N7 530 aa13.07□□□□□ -0.32
SYNE2-221ENST00000556342 USP17L22D6RA61 530 aa13.07□□□□□ -0.32
SYNE2-221ENST00000556342 USP17L17D6RBQ6 530 aa13.07□□□□□ -0.32
SYNE2-221ENST00000556342 USP17L19D6RCP7 530 aa13.07□□□□□ -0.32
SYNE2-221ENST00000556342 USP17L20D6RJB6 530 aa13.07□□□□□ -0.32
SYNE2-221ENST00000556342 MAP3K7O43318 606 aa13.07□□□□□ -0.32
SYNE2-221ENST00000556342 SURF6O75683 361 aaKnown RBP13.07□□□□□ -0.32
SYNE2-221ENST00000556342 GLRX3O76003 335 aaKnown RBP13.07□□□□□ -0.32
SYNE2-221ENST00000556342 USP17L24Q0WX57 530 aa13.07□□□□□ -0.32
SYNE2-221ENST00000556342 MFSD14CQ5VZR4 134 aa13.07□□□□□ -0.32
SYNE2-221ENST00000556342 TATDN1Q6P1N9 297 aa13.07□□□□□ -0.32
SYNE2-221ENST00000556342 CERS3Q8IU89 383 aa13.07□□□□□ -0.32
SYNE2-221ENST00000556342 SSH3Q8TE77 659 aa13.07□□□□□ -0.32
SYNE2-221ENST00000556342 EDC3Q96F86 508 aaKnown RBP13.07□□□□□ -0.32
SYNE2-221ENST00000556342 KIAA1683Q9H0B3 1180 aa13.07□□□□□ -0.32
SYNE2-221ENST00000556342 EHD4Q9H223 541 aa13.07□□□□□ -0.32
SYNE2-221ENST00000556342 FLRT1Q9NZU1 646 aa13.07□□□□□ -0.32
SYNE2-221ENST00000556342 SERPINB13Q9UIV8 391 aa13.07□□□□□ -0.32
SYNE2-221ENST00000556342 DBNLQ9UJU6 430 aaKnown RBP13.07□□□□□ -0.32
SYNE2-221ENST00000556342 NDUFB9Q9Y6M9 179 aa13.07□□□□□ -0.32
SYNE2-221ENST00000556342 SLC15A5A6NIM6 579 aa13.06□□□□□ -0.32
SYNE2-221ENST00000556342 IDH1O75874 414 aaKnown RBP13.06□□□□□ -0.32
SYNE2-221ENST00000556342 HOXC6P09630 235 aa13.06□□□□□ -0.32
SYNE2-221ENST00000556342 VCAM1P19320 739 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms