RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 RTEL1Q9NZ71 1219 aa6.88□□□□□ -1.31
SCFD1-218ENST00000556256 GPR160Q9UJ42 338 aa6.88□□□□□ -1.31
SCFD1-218ENST00000556256 RFXAPO00287 272 aa6.87□□□□□ -1.31
SCFD1-218ENST00000556256 KRTAP10-2P60368 255 aa6.87□□□□□ -1.31
SCFD1-218ENST00000556256 CHRNEQ04844 493 aa6.87□□□□□ -1.31
SCFD1-218ENST00000556256 PDE4BQ07343 736 aa6.87□□□□□ -1.31
SCFD1-218ENST00000556256 AGMOQ6ZNB7 445 aa6.87□□□□□ -1.31
SCFD1-218ENST00000556256 ADAM30Q9UKF2 790 aa6.87□□□□□ -1.31
SCFD1-218ENST00000556256 NOTOA8MTQ0 251 aa6.86□□□□□ -1.31
SCFD1-218ENST00000556256 ATP2B2Q01814 1243 aa6.86□□□□□ -1.31
SCFD1-218ENST00000556256 CCDC85BQ15834 202 aaPredicted RBP6.86□□□□□ -1.31
SCFD1-218ENST00000556256 ZSCAN29Q8IWY8 852 aaPredicted RBP6.86□□□□□ -1.31
SCFD1-218ENST00000556256 CXorf38Q8TB03 319 aa6.86□□□□□ -1.31
SCFD1-218ENST00000556256 LINC01599Q8WXQ3 324 aa6.86□□□□□ -1.31
SCFD1-218ENST00000556256 OTOL1A6NHN0 477 aaPredicted RBP6.85□□□□□ -1.31
SCFD1-218ENST00000556256 UPK3BL1B0FP48 263 aa6.85□□□□□ -1.31
SCFD1-218ENST00000556256 UPK3BL2E5RIL1 263 aa6.85□□□□□ -1.31
SCFD1-218ENST00000556256 PI3P19957 117 aa6.85□□□□□ -1.31
SCFD1-218ENST00000556256 TEKQ02763 1124 aa6.85□□□□□ -1.31
SCFD1-218ENST00000556256 PDE4CQ08493 712 aa6.85□□□□□ -1.31
SCFD1-218ENST00000556256 SKOR2Q2VWA4 1001 aaPredicted RBP6.85□□□□□ -1.31
SCFD1-218ENST00000556256 ANKS4BQ8N8V4 417 aa6.85□□□□□ -1.31
SCFD1-218ENST00000556256 CYB5D2Q8WUJ1 264 aa6.85□□□□□ -1.31
SCFD1-218ENST00000556256 MIR1-1HGQ9H1L0 117 aa6.85□□□□□ -1.31
SCFD1-218ENST00000556256 OR14I1A6ND48 311 aa6.84□□□□□ -1.31
SCFD1-218ENST00000556256 SASH1O94885 1247 aa6.84□□□□□ -1.31
SCFD1-218ENST00000556256 EFEMP2O95967 443 aa6.84□□□□□ -1.31
SCFD1-218ENST00000556256 DUSP4Q13115 394 aa6.84□□□□□ -1.31
SCFD1-218ENST00000556256 MAP3K11Q16584 847 aa6.84□□□□□ -1.31
SCFD1-218ENST00000556256 TSNAXIP1Q2TAA8 658 aa6.84□□□□□ -1.31
SCFD1-218ENST00000556256 GGNQ86UU5 652 aa6.84□□□□□ -1.31
SCFD1-218ENST00000556256 SIRT2Q8IXJ6 389 aa6.84□□□□□ -1.31
SCFD1-218ENST00000556256 DACT3Q96B18 629 aaPredicted RBP6.84□□□□□ -1.31
SCFD1-218ENST00000556256 SIGLEC10Q96LC7 697 aa6.84□□□□□ -1.31
SCFD1-218ENST00000556256 MBD1Q9UIS9 605 aaPredicted RBP6.84□□□□□ -1.31
SCFD1-218ENST00000556256 ZNF281Q9Y2X9 895 aa6.84□□□□□ -1.31
SCFD1-218ENST00000556256 CORINQ9Y5Q5 1042 aa6.84□□□□□ -1.31
SCFD1-218ENST00000556256 GTF3C3Q9Y5Q9 886 aa6.84□□□□□ -1.31
SCFD1-218ENST00000556256 IRAK3Q9Y616 596 aa6.84□□□□□ -1.31
SCFD1-218ENST00000556256 SHISA3A0PJX4 238 aa6.83□□□□□ -1.32
SCFD1-218ENST00000556256 TFE3P19532 575 aaPredicted RBP6.83□□□□□ -1.32
SCFD1-218ENST00000556256 LIG3P49916 1009 aa6.83□□□□□ -1.32
SCFD1-218ENST00000556256 SRSF3P84103 164 aaKnown RBP6.83□□□□□ -1.32
SCFD1-218ENST00000556256 RPL6Q02878 288 aaKnown RBP6.83□□□□□ -1.32
SCFD1-218ENST00000556256 PRRT2Q7Z6L0 340 aaPredicted RBP6.83□□□□□ -1.32
SCFD1-218ENST00000556256 RNF141Q8WVD5 230 aa6.83□□□□□ -1.32
SCFD1-218ENST00000556256 FRMD6Q96NE9 622 aa6.83□□□□□ -1.32
SCFD1-218ENST00000556256 ASB16Q96NS5 453 aa6.83□□□□□ -1.32
SCFD1-218ENST00000556256 G6PC3Q9BUM1 346 aa6.83□□□□□ -1.32
SCFD1-218ENST00000556256 RBM47A0AV96 593 aaKnown RBP6.82□□□□□ -1.32
SCFD1-218ENST00000556256 ADGRF1Q5T601 910 aa6.82□□□□□ -1.32
SCFD1-218ENST00000556256 NLRX1Q86UT6 975 aa6.82□□□□□ -1.32
SCFD1-218ENST00000556256 JARID2Q92833 1246 aaPredicted RBP6.82□□□□□ -1.32
SCFD1-218ENST00000556256 EPB41L4AQ9HCS5 686 aaPredicted RBP6.82□□□□□ -1.32
SCFD1-218ENST00000556256 PLCG1P19174 1290 aa6.81□□□□□ -1.32
SCFD1-218ENST00000556256 EIF4BP23588 611 aaKnown RBP6.81□□□□□ -1.32
SCFD1-218ENST00000556256 AFF3P51826 1226 aaKnown RBP6.81□□□□□ -1.32
SCFD1-218ENST00000556256 NFKB2Q00653 900 aa6.81□□□□□ -1.32
SCFD1-218ENST00000556256 FAM13CQ8NE31 585 aa6.81□□□□□ -1.32
SCFD1-218ENST00000556256 FEZF2Q8TBJ5 459 aa6.81□□□□□ -1.32
SCFD1-218ENST00000556256 SIRT5Q9NXA8 310 aa6.81□□□□□ -1.32
SCFD1-218ENST00000556256 LDHBP07195 334 aaKnown RBP6.8□□□□□ -1.32
SCFD1-218ENST00000556256 P4HBP07237 508 aaKnown RBP6.8□□□□□ -1.32
SCFD1-218ENST00000556256 YARSP54577 528 aaKnown RBP6.8□□□□□ -1.32
SCFD1-218ENST00000556256 EPHB3P54753 998 aa6.8□□□□□ -1.32
SCFD1-218ENST00000556256 KRTAP5-3Q6L8H2 238 aa6.8□□□□□ -1.32
SCFD1-218ENST00000556256 KREMEN1Q96MU8 473 aa6.8□□□□□ -1.32
SCFD1-218ENST00000556256 CNTD2Q9H8S5 307 aa6.8□□□□□ -1.32
SCFD1-218ENST00000556256 SLC22A31A6NKX4 558 aa6.79□□□□□ -1.32
SCFD1-218ENST00000556256 HRKO00198 91 aa6.79□□□□□ -1.32
SCFD1-218ENST00000556256 CELA3BP08861 270 aa6.79□□□□□ -1.32
SCFD1-218ENST00000556256 GNA15P30679 374 aa6.79□□□□□ -1.32
SCFD1-218ENST00000556256 VIPR1P32241 457 aa6.79□□□□□ -1.32
SCFD1-218ENST00000556256 VMACQ2NL98 169 aa6.79□□□□□ -1.32
SCFD1-218ENST00000556256 TMEM201Q5SNT2 666 aa6.79□□□□□ -1.32
SCFD1-218ENST00000556256 SLFN12Q8IYM2 578 aa6.79□□□□□ -1.32
SCFD1-218ENST00000556256 ZDHHC14Q8IZN3 488 aa6.79□□□□□ -1.32
SCFD1-218ENST00000556256 N4BP3O15049 544 aa6.78□□□□□ -1.32
SCFD1-218ENST00000556256 RPL10P27635 214 aaKnown RBP6.78□□□□□ -1.32
SCFD1-218ENST00000556256 TNNI2P48788 182 aa6.78□□□□□ -1.32
SCFD1-218ENST00000556256 CLEC16AQ2KHT3 1053 aa6.78□□□□□ -1.32
SCFD1-218ENST00000556256 TLR6Q9Y2C9 796 aa6.78□□□□□ -1.32
SCFD1-218ENST00000556256 USP2O75604 605 aaPredicted RBP6.77□□□□□ -1.33
SCFD1-218ENST00000556256 SDHBP21912 280 aa6.77□□□□□ -1.33
SCFD1-218ENST00000556256 YBX1P67809 324 aaKnown RBP6.77□□□□□ -1.33
SCFD1-218ENST00000556256 SLC14A2Q15849 920 aa6.77□□□□□ -1.33
SCFD1-218ENST00000556256 USHBP1Q8N6Y0 703 aa6.77□□□□□ -1.33
SCFD1-218ENST00000556256 SYT8Q8NBV8 401 aa6.77□□□□□ -1.33
SCFD1-218ENST00000556256 ASPNQ9BXN1 380 aa6.77□□□□□ -1.33
SCFD1-218ENST00000556256 CRTAC1Q9NQ79 661 aa6.77□□□□□ -1.33
SCFD1-218ENST00000556256 AK5Q9Y6K8 562 aa6.77□□□□□ -1.33
SCFD1-218ENST00000556256 NRDCO43847 1150 aa6.76□□□□□ -1.33
SCFD1-218ENST00000556256 BRD1O95696 1058 aa6.76□□□□□ -1.33
SCFD1-218ENST00000556256 RNF111Q6ZNA4 994 aa6.76□□□□□ -1.33
SCFD1-218ENST00000556256 TMEFF1Q8IYR6 380 aa6.76□□□□□ -1.33
SCFD1-218ENST00000556256 ZMYM5Q9UJ78 669 aa6.76□□□□□ -1.33
SCFD1-218ENST00000556256 CHURC1-FNTBB4DL54 471 aa6.75□□□□□ -1.33
SCFD1-218ENST00000556256 IRS4O14654 1257 aaPredicted RBP6.75□□□□□ -1.33
SCFD1-218ENST00000556256 ADRB1P08588 477 aa6.75□□□□□ -1.33
SCFD1-218ENST00000556256 ERICH6BQ5W0A0 696 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms