RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 RBM27Q9P2N5 1060 aaKnown RBP13.05□□□□□ -0.32
SHMT2-220ENST00000555634 ZNF112Q9UJU3 913 aa13.05□□□□□ -0.32
SHMT2-220ENST00000555634 TPCN1Q9ULQ1 816 aa13.05□□□□□ -0.32
SHMT2-220ENST00000555634 MTMR7Q9Y216 660 aa13.05□□□□□ -0.32
SHMT2-220ENST00000555634 TACC3Q9Y6A5 838 aa13.05□□□□□ -0.32
SHMT2-220ENST00000555634 PARP14Q460N5 1801 aa13.04□□□□□ -0.32
SHMT2-220ENST00000555634 IGKV6D-41A0A0C4DH26 115 aa13.04□□□□□ -0.32
SHMT2-220ENST00000555634 PFKFB2O60825 505 aa13.04□□□□□ -0.32
SHMT2-220ENST00000555634 TOMM70O94826 608 aa13.04□□□□□ -0.32
SHMT2-220ENST00000555634 INPP5BP32019 993 aa13.04□□□□□ -0.32
SHMT2-220ENST00000555634 EVCP57679 992 aa13.04□□□□□ -0.32
SHMT2-220ENST00000555634 HMGN5P82970 282 aaKnown RBP13.04□□□□□ -0.32
SHMT2-220ENST00000555634 IKQ13123 557 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-220ENST00000555634 VGLL4Q14135 290 aa13.04□□□□□ -0.32
SHMT2-220ENST00000555634 GPATCH4Q5T3I0 446 aaKnown RBP13.04□□□□□ -0.32
SHMT2-220ENST00000555634 GMCL1P1Q8NEA9 526 aa13.04□□□□□ -0.32
SHMT2-220ENST00000555634 LPAR1Q92633 364 aa13.04□□□□□ -0.32
SHMT2-220ENST00000555634 LLPHQ9BRT6 129 aaKnown RBP13.04□□□□□ -0.32
SHMT2-220ENST00000555634 TMOD4Q9NZQ9 345 aa13.04□□□□□ -0.32
SHMT2-220ENST00000555634 SMC3Q9UQE7 1217 aa13.04□□□□□ -0.32
SHMT2-220ENST00000555634 USP17L10C9JJH3 530 aa13.03□□□□□ -0.32
SHMT2-220ENST00000555634 TRAF5O00463 557 aa13.03□□□□□ -0.32
SHMT2-220ENST00000555634 PDIA3P30101 505 aaKnown RBP13.03□□□□□ -0.32
SHMT2-220ENST00000555634 SLC1A4P43007 532 aa13.03□□□□□ -0.32
SHMT2-220ENST00000555634 FSTL1Q12841 308 aa13.03□□□□□ -0.32
SHMT2-220ENST00000555634 MAP3K11Q16584 847 aa13.03□□□□□ -0.32
SHMT2-220ENST00000555634 ERO1BQ86YB8 467 aa13.03□□□□□ -0.32
SHMT2-220ENST00000555634 CCDC83Q8IWF9 413 aa13.03□□□□□ -0.32
SHMT2-220ENST00000555634 CCDC144CPQ8IYA2 1237 aa13.03□□□□□ -0.32
SHMT2-220ENST00000555634 FAM184AQ8NB25 1140 aa13.03□□□□□ -0.32
SHMT2-220ENST00000555634 FANCBQ8NB91 859 aa13.03□□□□□ -0.32
SHMT2-220ENST00000555634 ZNF280CQ8ND82 737 aa13.03□□□□□ -0.32
SHMT2-220ENST00000555634 WASF1Q92558 559 aa13.03□□□□□ -0.32
SHMT2-220ENST00000555634 ZKSCAN4Q969J2 545 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-220ENST00000555634 INTS4Q96HW7 963 aaKnown RBP13.03□□□□□ -0.32
SHMT2-220ENST00000555634 C19orf81C9J6K1 198 aa13.02□□□□□ -0.33
SHMT2-220ENST00000555634 USP2O75604 605 aaPredicted RBP13.02□□□□□ -0.33
SHMT2-220ENST00000555634 CD2BP2O95400 341 aaKnown RBP13.02□□□□□ -0.33
SHMT2-220ENST00000555634 PDIA4P13667 645 aaKnown RBP13.02□□□□□ -0.33
SHMT2-220ENST00000555634 PTPRAP18433 802 aa13.02□□□□□ -0.33
SHMT2-220ENST00000555634 PDCP20941 246 aa13.02□□□□□ -0.33
SHMT2-220ENST00000555634 CCT2P78371 535 aaKnown RBP13.02□□□□□ -0.33
SHMT2-220ENST00000555634 GRM4Q14833 912 aa13.02□□□□□ -0.33
SHMT2-220ENST00000555634 ME3Q16798 604 aa13.02□□□□□ -0.33
SHMT2-220ENST00000555634 SLFN13Q68D06 897 aa13.02□□□□□ -0.33
SHMT2-220ENST00000555634 RCSD1Q6JBY9 416 aa13.02□□□□□ -0.33
SHMT2-220ENST00000555634 CLEC10AQ8IUN9 316 aa13.02□□□□□ -0.33
SHMT2-220ENST00000555634 MKL1Q969V6 931 aa13.02□□□□□ -0.33
SHMT2-220ENST00000555634 LARP6Q9BRS8 491 aaKnown RBP13.02□□□□□ -0.33
SHMT2-220ENST00000555634 MYL10Q9BUA6 226 aa13.02□□□□□ -0.33
SHMT2-220ENST00000555634 WDR18Q9BV38 432 aa13.02□□□□□ -0.33
SHMT2-220ENST00000555634 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.02□□□□□ -0.335e-8■■■□□ 18.8
SHMT2-220ENST00000555634 KIAA1683Q9H0B3 1180 aa13.02□□□□□ -0.33
SHMT2-220ENST00000555634 VCPKMTQ9H867 229 aa13.02□□□□□ -0.33
SHMT2-220ENST00000555634 ELP3Q9H9T3 547 aa13.02□□□□□ -0.33
SHMT2-220ENST00000555634 GPHNQ9NQX3 736 aaPredicted RBP13.02□□□□□ -0.33
SHMT2-220ENST00000555634 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.02□□□□□ -0.33
SHMT2-220ENST00000555634 SEC63Q9UGP8 760 aaKnown RBP13.02□□□□□ -0.33
SHMT2-220ENST00000555634 BRPF3Q9ULD4 1205 aa13.02□□□□□ -0.33
SHMT2-220ENST00000555634 TMX2Q9Y320 296 aa13.02□□□□□ -0.33
SHMT2-220ENST00000555634 TRIM75PA6NK02 468 aa13.01□□□□□ -0.33
SHMT2-220ENST00000555634 KIF3CO14782 793 aa13.01□□□□□ -0.33
SHMT2-220ENST00000555634 SLURP2P0DP57 97 aa13.01□□□□□ -0.33
SHMT2-220ENST00000555634 XBP1P17861 261 aa13.01□□□□□ -0.33
SHMT2-220ENST00000555634 RXRAP19793 462 aa13.01□□□□□ -0.33
SHMT2-220ENST00000555634 NOVP48745 357 aa13.01□□□□□ -0.33
SHMT2-220ENST00000555634 PPATQ06203 517 aa13.01□□□□□ -0.33
SHMT2-220ENST00000555634 MTMR2Q13614 643 aa13.01□□□□□ -0.33
SHMT2-220ENST00000555634 TRIM29Q14134 588 aa13.01□□□□□ -0.33
SHMT2-220ENST00000555634 ZYXQ15942 572 aaKnown RBP13.01□□□□□ -0.33
SHMT2-220ENST00000555634 USP17L2Q6R6M4 530 aa13.01□□□□□ -0.33
SHMT2-220ENST00000555634 SLC10A4Q96EP9 437 aa13.01□□□□□ -0.33
SHMT2-220ENST00000555634 OTUD5Q96G74 571 aa13.01□□□□□ -0.33
SHMT2-220ENST00000555634 GMCL1Q96IK5 515 aa13.01□□□□□ -0.33
SHMT2-220ENST00000555634 CWC22Q9HCG8 908 aaKnown RBP13.01□□□□□ -0.33
SHMT2-220ENST00000555634 SNCAIPQ9Y6H5 919 aa13.01□□□□□ -0.33
SHMT2-220ENST00000555634 ZHX2Q9Y6X8 837 aa13.01□□□□□ -0.33
SHMT2-220ENST00000555634 MYH15Q9Y2K3 1946 aa13.01□□□□□ -0.33
SHMT2-220ENST00000555634 STK36Q9NRP7 1315 aa13□□□□□ -0.33
SHMT2-220ENST00000555634 SPDYE5A6NIY4 337 aa13□□□□□ -0.33
SHMT2-220ENST00000555634 F5H6K3 240 aa13□□□□□ -0.33
SHMT2-220ENST00000555634 WDR46O15213 610 aaKnown RBP13□□□□□ -0.33
SHMT2-220ENST00000555634 PDHBP11177 359 aa13□□□□□ -0.33
SHMT2-220ENST00000555634 GUCY1A2P33402 732 aa13□□□□□ -0.33
SHMT2-220ENST00000555634 STAT2P52630 851 aa13□□□□□ -0.33
SHMT2-220ENST00000555634 KLRC3Q07444 240 aa13□□□□□ -0.33
SHMT2-220ENST00000555634 SSRP1Q08945 709 aaKnown RBP13□□□□□ -0.33
SHMT2-220ENST00000555634 SCRN1Q12765 414 aa13□□□□□ -0.33
SHMT2-220ENST00000555634 TROAPQ12815 778 aa13□□□□□ -0.33
SHMT2-220ENST00000555634 TRAF1Q13077 416 aa13□□□□□ -0.33
SHMT2-220ENST00000555634 PABPC4Q13310 644 aaKnown RBP eCLIP13□□□□□ -0.33
SHMT2-220ENST00000555634 PPIL2Q13356 520 aa13□□□□□ -0.33
SHMT2-220ENST00000555634 CUL4AQ13619 759 aa13□□□□□ -0.33
SHMT2-220ENST00000555634 PPP1R3FQ6ZSY5 799 aaPredicted RBP13□□□□□ -0.33
SHMT2-220ENST00000555634 RAB11FIP4Q86YS3 637 aa13□□□□□ -0.33
SHMT2-220ENST00000555634 NECAB1Q8N987 351 aa13□□□□□ -0.33
SHMT2-220ENST00000555634 TANGO6Q9C0B7 1094 aa13□□□□□ -0.33
SHMT2-220ENST00000555634 ABT1Q9ULW3 272 aaKnown RBP13□□□□□ -0.33
SHMT2-220ENST00000555634 CTDP1Q9Y5B0 961 aaPredicted RBP13□□□□□ -0.33
SHMT2-220ENST00000555634 COL11A1P12107 1806 aaPredicted RBP12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms