RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 APPBP2Q92624 585 aa5.48□□□□□ -1.53
LIMA1-214ENST00000552783 AIDAQ96BJ3 306 aa5.48□□□□□ -1.53
LIMA1-214ENST00000552783 PIH1D3Q9NQM4 214 aaKnown RBP5.48□□□□□ -1.53
LIMA1-214ENST00000552783 EHD2Q9NZN4 543 aa5.48□□□□□ -1.53
LIMA1-214ENST00000552783 WWC3Q9ULE0 1092 aa5.48□□□□□ -1.53
LIMA1-214ENST00000552783 FAM169AQ9Y6X4 670 aa5.48□□□□□ -1.53
LIMA1-214ENST00000552783 MST1RQ04912 1400 aa5.48□□□□□ -1.53
LIMA1-214ENST00000552783 STRCQ7RTU9 1775 aa5.48□□□□□ -1.53
LIMA1-214ENST00000552783 ARFGEF2Q9Y6D5 1785 aa5.48□□□□□ -1.53
LIMA1-214ENST00000552783 TTC26A0AVF1 554 aa5.48□□□□□ -1.53
LIMA1-214ENST00000552783 MYO1FO00160 1098 aa5.48□□□□□ -1.53
LIMA1-214ENST00000552783 FECHP22830 423 aa5.48□□□□□ -1.53
LIMA1-214ENST00000552783 HNRNPH1P31943 449 aaKnown RBP5.48□□□□□ -1.53
LIMA1-214ENST00000552783 KRT9P35527 623 aa5.48□□□□□ -1.53
LIMA1-214ENST00000552783 KLK7P49862 253 aa5.48□□□□□ -1.53
LIMA1-214ENST00000552783 PMS1P54277 932 aaKnown RBP5.48□□□□□ -1.53
LIMA1-214ENST00000552783 SLC7A5Q01650 507 aa5.48□□□□□ -1.53
LIMA1-214ENST00000552783 WHAMMP3Q1A5X7 153 aa5.48□□□□□ -1.53
LIMA1-214ENST00000552783 WDR59Q6PJI9 974 aa5.48□□□□□ -1.53
LIMA1-214ENST00000552783 BICDL1Q6ZP65 573 aa5.48□□□□□ -1.53
LIMA1-214ENST00000552783 CADPS2Q86UW7 1296 aa5.48□□□□□ -1.53
LIMA1-214ENST00000552783 DNAJC10Q8IXB1 793 aa5.48□□□□□ -1.53
LIMA1-214ENST00000552783 SYMPKQ92797 1274 aaKnown RBP5.48□□□□□ -1.53
LIMA1-214ENST00000552783 ARL8AQ96BM9 186 aa5.48□□□□□ -1.53
LIMA1-214ENST00000552783 NUP88Q99567 741 aaPredicted RBP5.48□□□□□ -1.53
LIMA1-214ENST00000552783 SELENOOQ9BVL4 669 aa5.48□□□□□ -1.53
LIMA1-214ENST00000552783 DDX24Q9GZR7 859 aaKnown RBP eCLIP5.48□□□□□ -1.53
LIMA1-214ENST00000552783 MED4Q9NPJ6 270 aa5.48□□□□□ -1.53
LIMA1-214ENST00000552783 DMGDHQ9UI17 866 aaKnown RBP5.48□□□□□ -1.53
LIMA1-214ENST00000552783 TRIM49BA6NDI0 452 aa5.47□□□□□ -1.53
LIMA1-214ENST00000552783 MINDY4BA8MYZ0 360 aa5.47□□□□□ -1.53
LIMA1-214ENST00000552783 PES1O00541 588 aaKnown RBP5.47□□□□□ -1.53
LIMA1-214ENST00000552783 MYO1BO43795 1136 aa5.47□□□□□ -1.53
LIMA1-214ENST00000552783 CPP00450 1065 aa5.47□□□□□ -1.53
LIMA1-214ENST00000552783 ERCC5P28715 1186 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-214ENST00000552783 TDO2P48775 406 aa5.47□□□□□ -1.53
LIMA1-214ENST00000552783 PSEN1P49768 467 aa5.47□□□□□ -1.53
LIMA1-214ENST00000552783 STIM1Q13586 685 aa5.47□□□□□ -1.53
LIMA1-214ENST00000552783 TMEM67Q5HYA8 995 aa5.47□□□□□ -1.53
LIMA1-214ENST00000552783 MMS22LQ6ZRQ5 1243 aa5.47□□□□□ -1.53
LIMA1-214ENST00000552783 IRF2BP1Q8IU81 584 aa5.47□□□□□ -1.53
LIMA1-214ENST00000552783 SH2D3CQ8N5H7 860 aa5.47□□□□□ -1.53
LIMA1-214ENST00000552783 PSMB7Q99436 277 aa5.47□□□□□ -1.53
LIMA1-214ENST00000552783 EPB41L4AQ9HCS5 686 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-214ENST00000552783 RGPD5Q99666 1765 aa5.47□□□□□ -1.53
LIMA1-214ENST00000552783 MYH13Q9UKX3 1938 aa5.47□□□□□ -1.53
LIMA1-214ENST00000552783 OVOS2A0A0G2JMS6 1433 aa5.47□□□□□ -1.53
LIMA1-214ENST00000552783 XDHP47989 1333 aa5.47□□□□□ -1.53
LIMA1-214ENST00000552783 N4BP3O15049 544 aa5.47□□□□□ -1.53
LIMA1-214ENST00000552783 PRKAB2O43741 272 aa5.47□□□□□ -1.53
LIMA1-214ENST00000552783 SHOX2O60902 331 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-214ENST00000552783 NDUFA10O95299 355 aa5.47□□□□□ -1.53
LIMA1-214ENST00000552783 STARD3NLO95772 234 aa5.47□□□□□ -1.53
LIMA1-214ENST00000552783 VEGFAP15692 232 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-214ENST00000552783 PIP4K2BP78356 416 aa5.47□□□□□ -1.53
LIMA1-214ENST00000552783 CYP27A1Q02318 531 aa5.47□□□□□ -1.53
LIMA1-214ENST00000552783 TCIRG1Q13488 830 aa5.47□□□□□ -1.53
LIMA1-214ENST00000552783 CTR9Q6PD62 1173 aa5.47□□□□□ -1.53
LIMA1-214ENST00000552783 SH3RF1Q7Z6J0 888 aa5.47□□□□□ -1.53
LIMA1-214ENST00000552783 EFCAB13Q8IY85 973 aa5.47□□□□□ -1.53
LIMA1-214ENST00000552783 TSEN2Q8NCE0 465 aaKnown RBP5.47□□□□□ -1.53
LIMA1-214ENST00000552783 SMARCC1Q92922 1105 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-214ENST00000552783 GNL3LQ9NVN8 582 aaKnown RBP5.47□□□□□ -1.53
LIMA1-214ENST00000552783 GDAQ9Y2T3 454 aa5.47□□□□□ -1.53
LIMA1-214ENST00000552783 SRPRBQ9Y5M8 271 aaKnown RBP5.47□□□□□ -1.53
LIMA1-214ENST00000552783 EPN1Q9Y6I3 576 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-214ENST00000552783 MYH10P35580 1976 aa5.47□□□□□ -1.53
LIMA1-214ENST00000552783 SPATA31A3Q5VYP0 1347 aa5.47□□□□□ -1.53
LIMA1-214ENST00000552783 A0A087WUV0 522 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-214ENST00000552783 POTEB2H3BUK9 544 aa5.47□□□□□ -1.53
LIMA1-214ENST00000552783 ERLIN2O94905 339 aa5.47□□□□□ -1.53
LIMA1-214ENST00000552783 SSRP1Q08945 709 aaKnown RBP5.47□□□□□ -1.53
LIMA1-214ENST00000552783 TTMPQ5BVD1 217 aa5.47□□□□□ -1.53
LIMA1-214ENST00000552783 KCTD16Q68DU8 428 aa5.47□□□□□ -1.53
LIMA1-214ENST00000552783 SUGP1Q8IWZ8 645 aaKnown RBP5.47□□□□□ -1.53
LIMA1-214ENST00000552783 RASSF8Q8NHQ8 419 aa5.47□□□□□ -1.53
LIMA1-214ENST00000552783 BCAS4Q8TDM0 211 aa5.47□□□□□ -1.53
LIMA1-214ENST00000552783 MYCBPQ99417 103 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-214ENST00000552783 NAA15Q9BXJ9 866 aaKnown RBP5.47□□□□□ -1.53
LIMA1-214ENST00000552783 GPR108Q9NPR9 543 aa5.47□□□□□ -1.53
LIMA1-214ENST00000552783 AGPAT5Q9NUQ2 364 aa5.47□□□□□ -1.53
LIMA1-214ENST00000552783 TTF2Q9UNY4 1162 aaKnown RBP5.47□□□□□ -1.53
LIMA1-214ENST00000552783 ZNF532Q9HCE3 1301 aa5.46□□□□□ -1.53
LIMA1-214ENST00000552783 ERICH2A1L162 156 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 RASSF10A6NK89 507 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 IFIT3O14879 490 aaKnown RBP5.46□□□□□ -1.54
LIMA1-214ENST00000552783 ADAMTS2O95450 1211 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 FMNL1O95466 1100 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-214ENST00000552783 CHRM1P11229 460 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-214ENST00000552783 IL2RBP14784 551 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 IBSPP21815 317 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-214ENST00000552783 CXCR5P32302 372 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 SAFBQ15424 915 aaKnown RBP eCLIP5.46□□□□□ -1.54
LIMA1-214ENST00000552783 IL17AQ16552 155 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 MCTP2Q6DN12 878 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 CCNI2Q6ZMN8 369 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-214ENST00000552783 KRT26Q7Z3Y9 468 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 CCDC148Q8NFR7 591 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 NAPBQ9H115 298 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 BRMS1Q9HCU9 246 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 141.5 ms