RNA–Protein interactions for RNA: ENST00000550160.5

CNOT2-223, Transcript of CCR4-NOT transcription complex subunit 2, human

TSL 5

Gene CNOT2, Length 993 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT2-223	ENST00000550160	NOL9	Q5SY16	702 aa	Known RBP	13.55	□□□□□ -0.24
CNOT2-223	ENST00000550160	CHADL	Q6NUI6	762 aa		13.55	□□□□□ -0.24
CNOT2-223	ENST00000550160	PLCD3	Q8N3E9	789 aa		13.55	□□□□□ -0.24
CNOT2-223	ENST00000550160	NECAB1	Q8N987	351 aa		13.55	□□□□□ -0.24
CNOT2-223	ENST00000550160	LLPH	Q9BRT6	129 aa	Known RBP	13.55	□□□□□ -0.24
CNOT2-223	ENST00000550160	MYL10	Q9BUA6	226 aa		13.55	□□□□□ -0.24
CNOT2-223	ENST00000550160	KIF3A	Q9Y496	699 aa		13.55	□□□□□ -0.24
CNOT2-223	ENST00000550160	NID2	Q14112	1375 aa		13.55	□□□□□ -0.24
CNOT2-223	ENST00000550160	USP17L5	A8MUK1	530 aa		13.54	□□□□□ -0.24
CNOT2-223	ENST00000550160	USP2	O75604	605 aa	Predicted RBP	13.54	□□□□□ -0.24
CNOT2-223	ENST00000550160	INPP5B	P32019	993 aa		13.54	□□□□□ -0.24
CNOT2-223	ENST00000550160	GUCY1A2	P33402	732 aa		13.54	□□□□□ -0.24
CNOT2-223	ENST00000550160	GNAQ	P50148	359 aa		13.54	□□□□□ -0.24
CNOT2-223	ENST00000550160	FKBP1B	P68106	108 aa		13.54	□□□□□ -0.24
CNOT2-223	ENST00000550160	MAP3K9	P80192	1104 aa		13.54	□□□□□ -0.24
CNOT2-223	ENST00000550160	SCRN1	Q12765	414 aa		13.54	□□□□□ -0.24
CNOT2-223	ENST00000550160	RRP1B	Q14684	758 aa	Known RBP	13.54	□□□□□ -0.24
CNOT2-223	ENST00000550160	CLEC10A	Q8IUN9	316 aa		13.54	□□□□□ -0.24
CNOT2-223	ENST00000550160	FANCB	Q8NB91	859 aa		13.54	□□□□□ -0.24
CNOT2-223	ENST00000550160	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	13.54	□□□□□ -0.24
CNOT2-223	ENST00000550160	MKL1	Q969V6	931 aa		13.54	□□□□□ -0.24
CNOT2-223	ENST00000550160	FEZ1	Q99689	392 aa		13.54	□□□□□ -0.24
CNOT2-223	ENST00000550160	CWC22	Q9HCG8	908 aa	Known RBP	13.54	□□□□□ -0.24
CNOT2-223	ENST00000550160	GOPC	Q9HD26	462 aa		13.54	□□□□□ -0.24
CNOT2-223	ENST00000550160	HPS5	Q9UPZ3	1129 aa		13.54	□□□□□ -0.24
CNOT2-223	ENST00000550160	SMC3	Q9UQE7	1217 aa		13.54	□□□□□ -0.24
CNOT2-223	ENST00000550160	GREB1L	Q9C091	1923 aa	Predicted RBP	13.54	□□□□□ -0.24
CNOT2-223	ENST00000550160	POLR2A	P24928	1970 aa	Known RBP	13.53	□□□□□ -0.24
CNOT2-223	ENST00000550160	RAD21	O60216	631 aa		13.53	□□□□□ -0.24
CNOT2-223	ENST00000550160	RXRA	P19793	462 aa		13.53	□□□□□ -0.24
CNOT2-223	ENST00000550160	HMGN5	P82970	282 aa	Known RBP	13.53	□□□□□ -0.24
CNOT2-223	ENST00000550160	TROAP	Q12815	778 aa		13.53	□□□□□ -0.24
CNOT2-223	ENST00000550160	RAB11FIP4	Q86YS3	637 aa		13.53	□□□□□ -0.24
CNOT2-223	ENST00000550160	CCDC144CP	Q8IYA2	1237 aa		13.53	□□□□□ -0.24
CNOT2-223	ENST00000550160	ANKRD13A	Q8IZ07	590 aa		13.53	□□□□□ -0.24
CNOT2-223	ENST00000550160	LRRC47	Q8N1G4	583 aa	Known RBP	13.53	□□□□□ -0.24
CNOT2-223	ENST00000550160	SPRYD3	Q8NCJ5	442 aa		13.53	□□□□□ -0.24
CNOT2-223	ENST00000550160	ZNF408	Q9H9D4	720 aa		13.53	□□□□□ -0.24
CNOT2-223	ENST00000550160	NCOA5	Q9HCD5	579 aa	Known RBP	13.53	□□□□□ -0.24
CNOT2-223	ENST00000550160	MTMR7	Q9Y216	660 aa		13.53	□□□□□ -0.24
CNOT2-223	ENST00000550160	UNCX	A6NJT0	531 aa		13.52	□□□□□ -0.25
CNOT2-223	ENST00000550160	PARP1	P09874	1014 aa	Known RBP	13.52	□□□□□ -0.25
CNOT2-223	ENST00000550160	PTPRA	P18433	802 aa		13.52	□□□□□ -0.25
CNOT2-223	ENST00000550160	JAG1	P78504	1218 aa		13.52	□□□□□ -0.25
CNOT2-223	ENST00000550160	GRM4	Q14833	912 aa		13.52	□□□□□ -0.25
CNOT2-223	ENST00000550160	MAP3K11	Q16584	847 aa		13.52	□□□□□ -0.25
CNOT2-223	ENST00000550160	SHROOM1	Q2M3G4	852 aa	Predicted RBP	13.52	□□□□□ -0.25
CNOT2-223	ENST00000550160	ASPRV1	Q53RT3	343 aa		13.52	□□□□□ -0.25
CNOT2-223	ENST00000550160	GPATCH4	Q5T3I0	446 aa	Known RBP	13.52	□□□□□ -0.25
CNOT2-223	ENST00000550160	TRIM22	Q8IYM9	498 aa		13.52	□□□□□ -0.25
CNOT2-223	ENST00000550160	GMCL1P1	Q8NEA9	526 aa		13.52	□□□□□ -0.25
CNOT2-223	ENST00000550160	DCAF4	Q8WV16	495 aa		13.52	□□□□□ -0.25
CNOT2-223	ENST00000550160	ZKSCAN4	Q969J2	545 aa	Predicted RBP	13.52	□□□□□ -0.25
CNOT2-223	ENST00000550160	LZTS2	Q9BRK4	669 aa		13.52	□□□□□ -0.25
CNOT2-223	ENST00000550160	ISY1	Q9ULR0	285 aa	Known RBP	13.52	□□□□□ -0.25
CNOT2-223	ENST00000550160	TMX2	Q9Y320	296 aa		13.52	□□□□□ -0.25
CNOT2-223	ENST00000550160	TRAF5	O00463	557 aa		13.51	□□□□□ -0.25
CNOT2-223	ENST00000550160	PDHB	P11177	359 aa		13.51	□□□□□ -0.25
CNOT2-223	ENST00000550160	PDIA4	P13667	645 aa	Known RBP	13.51	□□□□□ -0.25
CNOT2-223	ENST00000550160	SLC1A4	P43007	532 aa		13.51	□□□□□ -0.25
CNOT2-223	ENST00000550160	USP14	P54578	494 aa		13.51	□□□□□ -0.25
CNOT2-223	ENST00000550160	AKAP17A	Q02040	695 aa	Known RBP	13.51	□□□□□ -0.25
CNOT2-223	ENST00000550160	VGLL4	Q14135	290 aa		13.51	□□□□□ -0.25
CNOT2-223	ENST00000550160	CCDC96	Q2M329	555 aa		13.51	□□□□□ -0.25
CNOT2-223	ENST00000550160	DLK2	Q6UY11	383 aa		13.51	□□□□□ -0.25
CNOT2-223	ENST00000550160	C2orf69	Q8N8R5	385 aa		13.51	□□□□□ -0.25
CNOT2-223	ENST00000550160	FAM184A	Q8NB25	1140 aa		13.51	□□□□□ -0.25
CNOT2-223	ENST00000550160	WDR18	Q9BV38	432 aa		13.51	□□□□□ -0.25
CNOT2-223	ENST00000550160	RBM27	Q9P2N5	1060 aa	Known RBP	13.51	□□□□□ -0.25
CNOT2-223	ENST00000550160	DOCK1	Q14185	1865 aa		13.5	□□□□□ -0.25
CNOT2-223	ENST00000550160	PTPDC1	A2A3K4	754 aa		13.5	□□□□□ -0.25
CNOT2-223	ENST00000550160	USP17L10	C9JJH3	530 aa		13.5	□□□□□ -0.25
CNOT2-223	ENST00000550160	CELF2	O95319	508 aa	Known RBP	13.5	□□□□□ -0.25
CNOT2-223	ENST00000550160	IFNAR1	P17181	557 aa		13.5	□□□□□ -0.25
CNOT2-223	ENST00000550160	PDC	P20941	246 aa		13.5	□□□□□ -0.25
CNOT2-223	ENST00000550160	CDC27	P30260	824 aa		13.5	□□□□□ -0.25
CNOT2-223	ENST00000550160	ADD1	P35611	737 aa	Known RBP	13.5	□□□□□ -0.25
CNOT2-223	ENST00000550160	SSRP1	Q08945	709 aa	Known RBP	13.5	□□□□□ -0.25
CNOT2-223	ENST00000550160	ST3GAL1	Q11201	340 aa		13.5	□□□□□ -0.25
CNOT2-223	ENST00000550160	SLFN13	Q68D06	897 aa		13.5	□□□□□ -0.25
CNOT2-223	ENST00000550160	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	13.5	□□□□□ -0.25
CNOT2-223	ENST00000550160	ZNF280C	Q8ND82	737 aa		13.5	□□□□□ -0.25
CNOT2-223	ENST00000550160	SMC1B	Q8NDV3	1235 aa		13.5	□□□□□ -0.25
CNOT2-223	ENST00000550160	NSUN7	Q8NE18	718 aa	Known RBP	13.5	□□□□□ -0.25
CNOT2-223	ENST00000550160	RBM46	Q8TBY0	533 aa	Known RBP	13.5	□□□□□ -0.25
CNOT2-223	ENST00000550160	WASF1	Q92558	559 aa		13.5	□□□□□ -0.25
CNOT2-223	ENST00000550160	LPAR1	Q92633	364 aa		13.5	□□□□□ -0.25
CNOT2-223	ENST00000550160	GMCL1	Q96IK5	515 aa		13.5	□□□□□ -0.25
CNOT2-223	ENST00000550160	KIAA1683	Q9H0B3	1180 aa		13.5	□□□□□ -0.25
CNOT2-223	ENST00000550160	VCPKMT	Q9H867	229 aa		13.5	□□□□□ -0.25
CNOT2-223	ENST00000550160	GBA2	Q9HCG7	927 aa	Predicted RBP	13.5	□□□□□ -0.25
CNOT2-223	ENST00000550160	FZD1	Q9UP38	647 aa		13.5	□□□□□ -0.25
CNOT2-223	ENST00000550160	SRCAP	Q6ZRS2	3230 aa		13.5	□□□□□ -0.25
CNOT2-223	ENST00000550160	C19orf81	C9J6K1	198 aa		13.49	□□□□□ -0.25
CNOT2-223	ENST00000550160	KLRF2	D3W0D1	207 aa		13.49	□□□□□ -0.25
CNOT2-223	ENST00000550160		F5H6K3	240 aa		13.49	□□□□□ -0.25
CNOT2-223	ENST00000550160	NDUFB10	O96000	172 aa		13.49	□□□□□ -0.25
CNOT2-223	ENST00000550160	SNHG28	P0DPA3	235 aa		13.49	□□□□□ -0.25
CNOT2-223	ENST00000550160	YY1	P25490	414 aa		13.49	□□□□□ -0.25
CNOT2-223	ENST00000550160	GJB2	P29033	226 aa		13.49	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms