RNA–Protein interactions for RNA: ENST00000549328.1

CHMP1A-207, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 1,003 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-207ENST00000549328 GPR142Q7Z601 462 aa22.32■■□□□ 1.16
CHMP1A-207ENST00000549328 TRMT44Q8IYL2 757 aaKnown RBP22.32■■□□□ 1.16
CHMP1A-207ENST00000549328 USP6NLQ92738 828 aa22.32■■□□□ 1.16
CHMP1A-207ENST00000549328 FSD1Q9BTV5 496 aa22.32■■□□□ 1.16
CHMP1A-207ENST00000549328 VCPKMTQ9H867 229 aa22.32■■□□□ 1.16
CHMP1A-207ENST00000549328 PLXNB2O15031 1838 aa22.31■■□□□ 1.16
CHMP1A-207ENST00000549328 ROBO3Q96MS0 1386 aa22.31■■□□□ 1.16
CHMP1A-207ENST00000549328 PATL2C9JE40 543 aaKnown RBP22.31■■□□□ 1.16
CHMP1A-207ENST00000549328 M0R2C6 588 aa22.31■■□□□ 1.16
CHMP1A-207ENST00000549328 CYP2B6P20813 491 aa22.31■■□□□ 1.16
CHMP1A-207ENST00000549328 ZMYM1Q5SVZ6 1142 aa22.31■■□□□ 1.16
CHMP1A-207ENST00000549328 MORN1Q5T089 497 aa22.31■■□□□ 1.16
CHMP1A-207ENST00000549328 UBE2Q1Q7Z7E8 422 aa22.31■■□□□ 1.16
CHMP1A-207ENST00000549328 MINDY4BA8MYZ0 360 aa22.3■■□□□ 1.16
CHMP1A-207ENST00000549328 APPP05067 770 aa22.3■■□□□ 1.16
CHMP1A-207ENST00000549328 KIAA1755Q5JYT7 1200 aa22.3■■□□□ 1.16
CHMP1A-207ENST00000549328 CLEC10AQ8IUN9 316 aa22.3■■□□□ 1.16
CHMP1A-207ENST00000549328 DEFB118Q96PH6 123 aa22.3■■□□□ 1.16
CHMP1A-207ENST00000549328 NACAP1Q9BZK3 213 aa22.3■■□□□ 1.16
CHMP1A-207ENST00000549328 TANGO6Q9C0B7 1094 aa22.3■■□□□ 1.16
CHMP1A-207ENST00000549328 MKNK2Q9HBH9 465 aa22.3■■□□□ 1.16
CHMP1A-207ENST00000549328 ZNF287Q9HBT7 754 aa22.3■■□□□ 1.16
CHMP1A-207ENST00000549328 EPB41L4AQ9HCS5 686 aaPredicted RBP22.3■■□□□ 1.16
CHMP1A-207ENST00000549328 BTBD7Q9P203 1132 aa22.3■■□□□ 1.16
CHMP1A-207ENST00000549328 RPTORQ8N122 1335 aa22.3■■□□□ 1.16
CHMP1A-207ENST00000549328 EEF2P13639 858 aaKnown RBP22.29■■□□□ 1.16
CHMP1A-207ENST00000549328 RASA1P20936 1047 aa22.29■■□□□ 1.16
CHMP1A-207ENST00000549328 RGS2P41220 211 aa22.29■■□□□ 1.16
CHMP1A-207ENST00000549328 TDO2P48775 406 aa22.29■■□□□ 1.16
CHMP1A-207ENST00000549328 PDE1AP54750 535 aa22.29■■□□□ 1.16
CHMP1A-207ENST00000549328 IFNL3Q8IZI9 196 aa22.29■■□□□ 1.16
CHMP1A-207ENST00000549328 MB21D1Q8N884 522 aa22.29■■□□□ 1.16
CHMP1A-207ENST00000549328 TRIB2Q92519 343 aa22.29■■□□□ 1.16
CHMP1A-207ENST00000549328 EVI5LQ96CN4 794 aa22.29■■□□□ 1.16
CHMP1A-207ENST00000549328 CRISPLD2Q9H0B8 497 aa22.29■■□□□ 1.16
CHMP1A-207ENST00000549328 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.29■■□□□ 1.162e-7■■■■□ 21.5
CHMP1A-207ENST00000549328 RWDD1Q9H446 243 aaPredicted RBP22.29■■□□□ 1.16
CHMP1A-207ENST00000549328 CWC22Q9HCG8 908 aaKnown RBP22.29■■□□□ 1.16
CHMP1A-207ENST00000549328 HMX1Q9NP08 348 aaPredicted RBP22.29■■□□□ 1.16
CHMP1A-207ENST00000549328 WDR46O15213 610 aaKnown RBP22.28■■□□□ 1.16
CHMP1A-207ENST00000549328 TICAM2Q86XR7 235 aa22.28■■□□□ 1.16
CHMP1A-207ENST00000549328 SMC5Q8IY18 1101 aa22.28■■□□□ 1.16
CHMP1A-207ENST00000549328 SEC62Q99442 399 aaKnown RBP22.28■■□□□ 1.16
CHMP1A-207ENST00000549328 GNL3Q9BVP2 549 aaKnown RBP eCLIP22.28■■□□□ 1.16
CHMP1A-207ENST00000549328 SLC15A5A6NIM6 579 aa22.27■■□□□ 1.16
CHMP1A-207ENST00000549328 TFRCP02786 760 aaKnown RBP22.27■■□□□ 1.16
CHMP1A-207ENST00000549328 DSG3P32926 999 aa22.27■■□□□ 1.16
CHMP1A-207ENST00000549328 MAP2K5Q13163 448 aa22.27■■□□□ 1.16
CHMP1A-207ENST00000549328 MAP3K21Q5TCX8 1036 aa22.27■■□□□ 1.16
CHMP1A-207ENST00000549328 SPICE1Q8N0Z3 855 aa22.27■■□□□ 1.16
CHMP1A-207ENST00000549328 APBA2Q99767 749 aa22.27■■□□□ 1.16
CHMP1A-207ENST00000549328 GOPCQ9HD26 462 aa22.27■■□□□ 1.16
CHMP1A-207ENST00000549328 FLOT1O75955 427 aa22.26■■□□□ 1.15
CHMP1A-207ENST00000549328 PTPREP23469 700 aa22.26■■□□□ 1.15
CHMP1A-207ENST00000549328 ATP2B2Q01814 1243 aa22.26■■□□□ 1.15
CHMP1A-207ENST00000549328 NYAP2Q9P242 653 aa22.26■■□□□ 1.15
CHMP1A-207ENST00000549328 IVNS1ABPQ9Y6Y0 642 aa22.26■■□□□ 1.15
CHMP1A-207ENST00000549328 RLFQ13129 1914 aa22.25■■□□□ 1.15
CHMP1A-207ENST00000549328 STRNO43815 780 aa22.25■■□□□ 1.15
CHMP1A-207ENST00000549328 FARP2O94887 1054 aaPredicted RBP22.25■■□□□ 1.15
CHMP1A-207ENST00000549328 ZKSCAN1P17029 563 aaPredicted RBP22.25■■□□□ 1.15
CHMP1A-207ENST00000549328 TRIM32Q13049 653 aa22.25■■□□□ 1.15
CHMP1A-207ENST00000549328 WDR78Q5VTH9 848 aa22.25■■□□□ 1.15
CHMP1A-207ENST00000549328 ZNF444Q8N0Y2 327 aaPredicted RBP22.25■■□□□ 1.15
CHMP1A-207ENST00000549328 SHCBP1Q8NEM2 672 aa22.25■■□□□ 1.15
CHMP1A-207ENST00000549328 HTATIP2Q9BUP3 242 aa22.25■■□□□ 1.15
CHMP1A-207ENST00000549328 SPATC1LQ9H0A9 340 aa22.25■■□□□ 1.15
CHMP1A-207ENST00000549328 GREB1LQ9C091 1923 aaPredicted RBP22.24■■□□□ 1.15
CHMP1A-207ENST00000549328 HOXC6P09630 235 aa22.24■■□□□ 1.15
CHMP1A-207ENST00000549328 GRB14Q14449 540 aa22.24■■□□□ 1.15
CHMP1A-207ENST00000549328 STK11IPQ8N1F8 1099 aa22.24■■□□□ 1.15
CHMP1A-207ENST00000549328 MOV10L1Q9BXT6 1211 aaKnown RBP22.24■■□□□ 1.15
CHMP1A-207ENST00000549328 NAPBQ9H115 298 aa22.24■■□□□ 1.15
CHMP1A-207ENST00000549328 ADAMTS5Q9UNA0 930 aa22.24■■□□□ 1.15
CHMP1A-207ENST00000549328 SLC3A2P08195 630 aaKnown RBP22.23■■□□□ 1.15
CHMP1A-207ENST00000549328 PRKAR2AP13861 404 aaKnown RBP22.23■■□□□ 1.15
CHMP1A-207ENST00000549328 ANKLE1Q8NAG6 615 aa22.23■■□□□ 1.15
CHMP1A-207ENST00000549328 EXOC6Q8TAG9 804 aa22.23■■□□□ 1.15
CHMP1A-207ENST00000549328 ATG4CQ96DT6 458 aa22.23■■□□□ 1.15
CHMP1A-207ENST00000549328 LNPKQ9C0E8 428 aa22.23■■□□□ 1.15
CHMP1A-207ENST00000549328 IGKV6D-41A0A0C4DH26 115 aa22.22■■□□□ 1.15
CHMP1A-207ENST00000549328 PDE4BQ07343 736 aa22.22■■□□□ 1.15
CHMP1A-207ENST00000549328 CACNB2Q08289 660 aaPredicted RBP22.22■■□□□ 1.15
CHMP1A-207ENST00000549328 CCL14Q16627 93 aa22.22■■□□□ 1.15
CHMP1A-207ENST00000549328 MROH8Q9H579 483 aa22.22■■□□□ 1.15
CHMP1A-207ENST00000549328 HELLSQ9NRZ9 838 aa22.22■■□□□ 1.15
CHMP1A-207ENST00000549328 SYNPO2Q9UMS6 1093 aa22.22■■□□□ 1.15
CHMP1A-207ENST00000549328 A0A0G2JMZ2 1700 aa22.21■■□□□ 1.15
CHMP1A-207ENST00000549328 DPF3Q92784 378 aa22.21■■□□□ 1.15
CHMP1A-207ENST00000549328 MKL1Q969V6 931 aa22.21■■□□□ 1.15
CHMP1A-207ENST00000549328 PRDM1O75626 825 aa22.2■■□□□ 1.14
CHMP1A-207ENST00000549328 IGHDP01880 384 aa22.2■■□□□ 1.14
CHMP1A-207ENST00000549328 ERCC3P19447 782 aa22.2■■□□□ 1.14
CHMP1A-207ENST00000549328 PPARAQ07869 468 aa22.2■■□□□ 1.14
CHMP1A-207ENST00000549328 MFSD14CQ5VZR4 134 aa22.2■■□□□ 1.14
CHMP1A-207ENST00000549328 CHD1LQ86WJ1 897 aa22.2■■□□□ 1.14
CHMP1A-207ENST00000549328 ABRAQ8N0Z2 381 aa22.2■■□□□ 1.14
CHMP1A-207ENST00000549328 MTMR4Q9NYA4 1195 aa22.2■■□□□ 1.14
CHMP1A-207ENST00000549328 OGDHLQ9ULD0 1010 aa22.2■■□□□ 1.14
CHMP1A-207ENST00000549328 F5H6K3 240 aa22.19■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms