RNA–Protein interactions for RNA: ENST00000544983.1

SNHG1-221, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 870 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-221ENST00000544983 CLIP2Q9UDT6 1046 aa13.82□□□□□ -0.2
SNHG1-221ENST00000544983 STX8Q9UNK0 236 aa13.82□□□□□ -0.2
SNHG1-221ENST00000544983 SEC24BO95487 1268 aa13.81□□□□□ -0.2
SNHG1-221ENST00000544983 ATP2B2Q01814 1243 aa13.81□□□□□ -0.2
SNHG1-221ENST00000544983 GRM1Q13255 1194 aa13.81□□□□□ -0.2
SNHG1-221ENST00000544983 BLOC1S2Q6QNY1 142 aa13.81□□□□□ -0.2
SNHG1-221ENST00000544983 ANKRD23Q86SG2 305 aa13.81□□□□□ -0.2
SNHG1-221ENST00000544983 FBXL16Q8N461 479 aa13.81□□□□□ -0.2
SNHG1-221ENST00000544983 ACER1Q8TDN7 264 aa13.81□□□□□ -0.2
SNHG1-221ENST00000544983 VCPKMTQ9H867 229 aa13.81□□□□□ -0.2
SNHG1-221ENST00000544983 TAF6LQ9Y6J9 622 aa13.81□□□□□ -0.2
SNHG1-221ENST00000544983 A0A1W2PRG0 241 aa13.8□□□□□ -0.2
SNHG1-221ENST00000544983 IFIT3O14879 490 aaKnown RBP13.8□□□□□ -0.2
SNHG1-221ENST00000544983 CA12O43570 354 aa13.8□□□□□ -0.2
SNHG1-221ENST00000544983 HOXA7P31268 230 aaPredicted RBP13.8□□□□□ -0.2
SNHG1-221ENST00000544983 LIFRP42702 1097 aa13.8□□□□□ -0.2
SNHG1-221ENST00000544983 HMGCS2P54868 508 aa13.8□□□□□ -0.2
SNHG1-221ENST00000544983 RCSD1Q6JBY9 416 aa13.8□□□□□ -0.2
SNHG1-221ENST00000544983 CCDC84Q86UT8 332 aaPredicted RBP13.8□□□□□ -0.2
SNHG1-221ENST00000544983 ENAHQ8N8S7 591 aaPredicted RBP13.8□□□□□ -0.2
SNHG1-221ENST00000544983 BRI3BPQ8WY22 251 aa13.8□□□□□ -0.2
SNHG1-221ENST00000544983 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.8□□□□□ -0.2
SNHG1-221ENST00000544983 PNMA3Q9UL41 463 aa13.8□□□□□ -0.2
SNHG1-221ENST00000544983 AGTPBP1Q9UPW5 1226 aa13.8□□□□□ -0.2
SNHG1-221ENST00000544983 TNKSO95271 1327 aa13.8□□□□□ -0.2
SNHG1-221ENST00000544983 PTPRFP10586 1907 aa13.8□□□□□ -0.2
SNHG1-221ENST00000544983 THSD7BQ9C0I4 1608 aa13.79□□□□□ -0.2
SNHG1-221ENST00000544983 F5H6K3 240 aa13.79□□□□□ -0.2
SNHG1-221ENST00000544983 WDR46O15213 610 aaKnown RBP13.79□□□□□ -0.2
SNHG1-221ENST00000544983 PRC1O43663 620 aa13.79□□□□□ -0.2
SNHG1-221ENST00000544983 NMT2O60551 498 aa13.79□□□□□ -0.2
SNHG1-221ENST00000544983 AOC2O75106 756 aa13.79□□□□□ -0.2
SNHG1-221ENST00000544983 RBM25P49756 843 aaKnown RBP13.79□□□□□ -0.2
SNHG1-221ENST00000544983 EXOSC10Q01780 885 aaKnown RBP13.79□□□□□ -0.2
SNHG1-221ENST00000544983 KLRC3Q07444 240 aa13.79□□□□□ -0.2
SNHG1-221ENST00000544983 MKRN3Q13064 507 aaKnown RBP13.79□□□□□ -0.2
SNHG1-221ENST00000544983 WTAPQ15007 396 aa13.79□□□□□ -0.2
SNHG1-221ENST00000544983 ADCK5Q3MIX3 580 aa13.79□□□□□ -0.2
SNHG1-221ENST00000544983 TMEM67Q5HYA8 995 aa13.79□□□□□ -0.2
SNHG1-221ENST00000544983 IFIT1BQ5T764 474 aaKnown RBP13.79□□□□□ -0.2
SNHG1-221ENST00000544983 GADL1Q6ZQY3 521 aa13.79□□□□□ -0.2
SNHG1-221ENST00000544983 CYB5R4Q7L1T6 521 aa13.79□□□□□ -0.2
SNHG1-221ENST00000544983 IFNL1Q8IU54 200 aa13.79□□□□□ -0.2
SNHG1-221ENST00000544983 IGDCC4Q8TDY8 1250 aa13.79□□□□□ -0.2
SNHG1-221ENST00000544983 GMCL1Q96IK5 515 aa13.79□□□□□ -0.2
SNHG1-221ENST00000544983 JAKMIP1Q96N16 626 aaKnown RBP13.79□□□□□ -0.2
SNHG1-221ENST00000544983 TMEM47Q9BQJ4 181 aa13.79□□□□□ -0.2
SNHG1-221ENST00000544983 C22orf23Q9BZE7 217 aa13.79□□□□□ -0.2
SNHG1-221ENST00000544983 KAT14Q9H8E8 782 aa13.79□□□□□ -0.2
SNHG1-221ENST00000544983 ZSWIM6Q9HCJ5 1215 aa13.79□□□□□ -0.2
SNHG1-221ENST00000544983 EMILIN3Q9NT22 766 aa13.79□□□□□ -0.2
SNHG1-221ENST00000544983 CYP46A1Q9Y6A2 500 aa13.79□□□□□ -0.2
SNHG1-221ENST00000544983 USP17L15C9J2P7 530 aa13.78□□□□□ -0.2
SNHG1-221ENST00000544983 USP17L13C9JLJ4 530 aa13.78□□□□□ -0.2
SNHG1-221ENST00000544983 USP17L11C9JVI0 530 aa13.78□□□□□ -0.2
SNHG1-221ENST00000544983 USP17L18D6R9N7 530 aa13.78□□□□□ -0.2
SNHG1-221ENST00000544983 USP17L22D6RA61 530 aa13.78□□□□□ -0.2
SNHG1-221ENST00000544983 USP17L17D6RBQ6 530 aa13.78□□□□□ -0.2
SNHG1-221ENST00000544983 USP17L19D6RCP7 530 aa13.78□□□□□ -0.2
SNHG1-221ENST00000544983 USP17L20D6RJB6 530 aa13.78□□□□□ -0.2
SNHG1-221ENST00000544983 VCAM1P19320 739 aa13.78□□□□□ -0.2
SNHG1-221ENST00000544983 CASTP20810 708 aaKnown RBP13.78□□□□□ -0.2
SNHG1-221ENST00000544983 ANTXR2P58335 489 aa13.78□□□□□ -0.2
SNHG1-221ENST00000544983 USP17L24Q0WX57 530 aa13.78□□□□□ -0.2
SNHG1-221ENST00000544983 MOGSQ13724 837 aa13.78□□□□□ -0.2
SNHG1-221ENST00000544983 SEC23AQ15436 765 aa13.78□□□□□ -0.2
SNHG1-221ENST00000544983 RUFY3Q7L099 469 aa13.78□□□□□ -0.2
SNHG1-221ENST00000544983 GTF3C2Q8WUA4 911 aaPredicted RBP13.78□□□□□ -0.2
SNHG1-221ENST00000544983 DCAF4Q8WV16 495 aa13.78□□□□□ -0.2
SNHG1-221ENST00000544983 BEGAINQ9BUH8 593 aa13.78□□□□□ -0.2
SNHG1-221ENST00000544983 CFHR5Q9BXR6 569 aa13.78□□□□□ -0.2
SNHG1-221ENST00000544983 SAGE1Q9NXZ1 904 aa13.78□□□□□ -0.2
SNHG1-221ENST00000544983 MYH4Q9Y623 1939 aa13.78□□□□□ -0.2
SNHG1-221ENST00000544983 BTBD19C9JJ37 291 aa13.77□□□□□ -0.21
SNHG1-221ENST00000544983 LOC285556D6RIA3 1793 aa13.77□□□□□ -0.21
SNHG1-221ENST00000544983 OSBPP22059 807 aa13.77□□□□□ -0.21
SNHG1-221ENST00000544983 RPS6KB1P23443 525 aa13.77□□□□□ -0.21
SNHG1-221ENST00000544983 GPAT2Q6NUI2 795 aa13.77□□□□□ -0.21
SNHG1-221ENST00000544983 SGMS1Q86VZ5 419 aa13.77□□□□□ -0.21
SNHG1-221ENST00000544983 CLEC10AQ8IUN9 316 aa13.77□□□□□ -0.21
SNHG1-221ENST00000544983 PNMA1Q8ND90 353 aa13.77□□□□□ -0.21
SNHG1-221ENST00000544983 PARK7Q99497 189 aaKnown RBP13.77□□□□□ -0.21
SNHG1-221ENST00000544983 MAP3K14Q99558 947 aa13.77□□□□□ -0.21
SNHG1-221ENST00000544983 PTPN18Q99952 460 aa13.77□□□□□ -0.21
SNHG1-221ENST00000544983 ZKSCAN3Q9BRR0 538 aa13.77□□□□□ -0.21
SNHG1-221ENST00000544983 MYPNQ86TC9 1320 aa13.76□□□□□ -0.21
SNHG1-221ENST00000544983 PDHXO00330 501 aa13.76□□□□□ -0.21
SNHG1-221ENST00000544983 SH2B2O14492 632 aaPredicted RBP13.76□□□□□ -0.21
SNHG1-221ENST00000544983 PLA2G6O60733 806 aa13.76□□□□□ -0.21
SNHG1-221ENST00000544983 NDUFB10O96000 172 aa13.76□□□□□ -0.21
SNHG1-221ENST00000544983 CALM1P0DP23 149 aa13.76□□□□□ -0.21
SNHG1-221ENST00000544983 CALM2P0DP24 149 aa13.76□□□□□ -0.21
SNHG1-221ENST00000544983 CALM3P0DP25 149 aa13.76□□□□□ -0.21
SNHG1-221ENST00000544983 SLC1A4P43007 532 aa13.76□□□□□ -0.21
SNHG1-221ENST00000544983 RCAN1P53805 252 aa13.76□□□□□ -0.21
SNHG1-221ENST00000544983 IRX3P78415 501 aaPredicted RBP13.76□□□□□ -0.21
SNHG1-221ENST00000544983 FGD1P98174 961 aa13.76□□□□□ -0.21
SNHG1-221ENST00000544983 ZYXQ15942 572 aaKnown RBP13.76□□□□□ -0.21
SNHG1-221ENST00000544983 GPATCH4Q5T3I0 446 aaKnown RBP13.76□□□□□ -0.21
SNHG1-221ENST00000544983 SLFN13Q68D06 897 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms